| http://purl.uniprot.org/unirules/MF_00934#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:325029 up:source unirule:MF_00934 .
_:325030 up:source unirule:MF_00934 .
_:325031 up:source unirule:MF_00934 .
_:325032 up:source unirule:MF_00934 .
_:325033 up:source unirule:MF_00934 .
_:325034 up:source unirule:MF_00934 .
_:325035 up:source unirule:MF_00934 .
_:325036 up:source unirule:MF_00934 .
_:325037 up:source unirule:MF_00934 .
_:325038 up:source unirule:MF_00934 .
_:325039 up:source unirule:MF_00934 .
_:325040 up:source unirule:MF_00934 .
_:325041 up:source unirule:MF_00934 .
_:325042 up:source unirule:MF_00934 .
_:325043 up:source unirule:MF_00934 .
_:325044 up:source unirule:MF_00934 .
_:325045 up:source unirule:MF_00934 .
_:325046 up:source unirule:MF_00934 .
_:325047 up:source unirule:MF_00934 .
_:325048 up:source unirule:MF_00934 .
_:325049 up:source unirule:MF_00934 .
_:325050 up:source unirule:MF_00934 .
_:325051 up:source unirule:MF_00934 .
_:325052 up:source unirule:MF_00934 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0003723 ,
GO:0036307 ,
GO:0070475 ,
keyword:489 ,
keyword:694 ,
keyword:698 ,
keyword:808 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.266' ;
up:fullName 'Ribosomal RNA large subunit methyltransferase J' ;
rdf:type up:Structured_Name .
?name1 up:fullName '23S rRNA (adenine(2030)-N6)-methyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName '23S rRNA m6A2030 methyltransferase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'rlmJ' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Specifically methylates the adenine in position 2030 of 23S rRNA.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RlmJ family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:59789 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:59789 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:59789 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:59789 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:59789 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:59789 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with substrate rRNA' .
?pfsb59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
_:325053 a rdf:Statement ;
up:attribution _:325029 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:325054 a rdf:Statement ;
up:attribution _:325030 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:325055 a rdf:Statement ;
up:attribution _:325031 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:325056 a rdf:Statement ;
up:attribution _:325032 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:325057 a rdf:Statement ;
up:attribution _:325033 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:325058 a rdf:Statement ;
up:attribution _:325034 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:325059 a rdf:Statement ;
up:attribution _:325035 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:325060 a rdf:Statement ;
up:attribution _:325036 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:325061 a rdf:Statement ;
up:attribution _:325037 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:325062 a rdf:Statement ;
up:attribution _:325038 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:325063 a rdf:Statement ;
up:attribution _:325039 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:325064 a rdf:Statement ;
up:attribution _:325040 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:325065 a rdf:Statement ;
up:attribution _:325041 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:325066 a rdf:Statement ;
up:attribution _:325042 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0036307 .
_:325067 a rdf:Statement ;
up:attribution _:325043 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:325068 a rdf:Statement ;
up:attribution _:325044 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070475 .
_:325069 a rdf:Statement ;
up:source unirule:MF_00934 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:325070 a rdf:Statement ;
up:attribution _:325045 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:325071 a rdf:Statement ;
up:source unirule:MF_00934 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:325072 a rdf:Statement ;
up:attribution _:325046 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:325073 a rdf:Statement ;
up:source unirule:MF_00934 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:325074 a rdf:Statement ;
up:attribution _:325047 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:325075 a rdf:Statement ;
up:source unirule:MF_00934 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:325076 a rdf:Statement ;
up:attribution _:325048 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:325077 a rdf:Statement ;
up:source unirule:MF_00934 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:325078 a rdf:Statement ;
up:attribution _:325049 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:325079 a rdf:Statement ;
up:source unirule:MF_00934 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:325080 a rdf:Statement ;
up:attribution _:325050 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:325081 a rdf:Statement ;
up:source unirule:MF_00934 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:325082 a rdf:Statement ;
up:attribution _:325051 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:325083 a rdf:Statement ;
up:source unirule:MF_00934 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:325084 a rdf:Statement ;
up:attribution _:325052 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00934
#Rule MF_00934 Created by:? on:2013-01-17 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00934 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00934a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP3763468 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3763470 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37634MF_0093463 .
?templateMotifSequenceMatchRegionP3763468 faldo:begin ?templateMotifSequenceMatchBeginP3763469 .
?templateMotifSequenceMatchBeginP3763469 faldo:position ?templateMotifSequenceMatchBeginPositionP3763464 ;
faldo:reference isoform:P37634-1 .
?templateMotifSequenceProfileAlignmentOperationP3763470 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093474 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37634MF_0093465 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093473 .
?targetMotifMatchRegionMatchBeginMF_0093473 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093466 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093474 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37634MF_0093463, 1, (STRLEN(?templateMotifCigarP37634MF_0093463) - STRLEN(REPLACE(?templateMotifCigarP37634MF_0093463, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP3763464) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37634MF_0093465, 1, (STRLEN(?targetMotifMatchCigarP37634MF_0093465) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_0093465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37634MF_0093465, 1, (STRLEN(?targetMotifMatchCigarP37634MF_0093465) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_0093465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0093466) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37634MF_0093463, 1, (STRLEN(?templateMotifCigarP37634MF_0093463) - STRLEN(REPLACE(?templateMotifCigarP37634MF_0093463, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP3763464) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37634MF_0093465, 1, (STRLEN(?targetMotifMatchCigarP37634MF_0093465) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_0093465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37634MF_0093465, 1, (STRLEN(?targetMotifMatchCigarP37634MF_0093465) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_0093465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0093466) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('[DNE][GAS]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP3763485 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3763487 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37634MF_0093480 .
?templateMotifSequenceMatchRegionP3763485 faldo:begin ?templateMotifSequenceMatchBeginP3763486 .
?templateMotifSequenceMatchBeginP3763486 faldo:position ?templateMotifSequenceMatchBeginPositionP3763481 ;
faldo:reference isoform:P37634-1 .
?templateMotifSequenceProfileAlignmentOperationP3763487 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093491 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37634MF_0093482 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093490 .
?targetMotifMatchRegionMatchBeginMF_0093490 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093483 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093491 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37634MF_0093480, 1, (STRLEN(?templateMotifCigarP37634MF_0093480) - STRLEN(REPLACE(?templateMotifCigarP37634MF_0093480, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP3763481) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37634MF_0093482, 1, (STRLEN(?targetMotifMatchCigarP37634MF_0093482) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_0093482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37634MF_0093482, 1, (STRLEN(?targetMotifMatchCigarP37634MF_0093482) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_0093482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0093483) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP37634100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37634102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37634MF_0093495 .
?templateMotifSequenceMatchRegionP37634100 faldo:begin ?templateMotifSequenceMatchBeginP37634101 .
?templateMotifSequenceMatchBeginP37634101 faldo:position ?templateMotifSequenceMatchBeginPositionP3763496 ;
faldo:reference isoform:P37634-1 .
?templateMotifSequenceProfileAlignmentOperationP37634102 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00934106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37634MF_0093497 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00934105 .
?targetMotifMatchRegionMatchBeginMF_00934105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093498 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00934106 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37634MF_0093495, 1, (STRLEN(?templateMotifCigarP37634MF_0093495) - STRLEN(REPLACE(?templateMotifCigarP37634MF_0093495, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP3763496) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37634MF_0093497, 1, (STRLEN(?targetMotifMatchCigarP37634MF_0093497) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_0093497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37634MF_0093497, 1, (STRLEN(?targetMotifMatchCigarP37634MF_0093497) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_0093497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0093498) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP37634115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37634117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37634MF_00934110 .
?templateMotifSequenceMatchRegionP37634115 faldo:begin ?templateMotifSequenceMatchBeginP37634116 .
?templateMotifSequenceMatchBeginP37634116 faldo:position ?templateMotifSequenceMatchBeginPositionP37634111 ;
faldo:reference isoform:P37634-1 .
?templateMotifSequenceProfileAlignmentOperationP37634117 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00934121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37634MF_00934112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00934120 .
?targetMotifMatchRegionMatchBeginMF_00934120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00934113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00934121 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37634MF_00934110, 1, (STRLEN(?templateMotifCigarP37634MF_00934110) - STRLEN(REPLACE(?templateMotifCigarP37634MF_00934110, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP37634111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37634MF_00934112, 1, (STRLEN(?targetMotifMatchCigarP37634MF_00934112) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_00934112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37634MF_00934112, 1, (STRLEN(?targetMotifMatchCigarP37634MF_00934112) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_00934112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00934113) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER (REGEX('[HYFN]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionP37634130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37634132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37634MF_00934125 .
?templateMotifSequenceMatchRegionP37634130 faldo:begin ?templateMotifSequenceMatchBeginP37634131 .
?templateMotifSequenceMatchBeginP37634131 faldo:position ?templateMotifSequenceMatchBeginPositionP37634126 ;
faldo:reference isoform:P37634-1 .
?templateMotifSequenceProfileAlignmentOperationP37634132 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00934136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37634MF_00934127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00934135 .
?targetMotifMatchRegionMatchBeginMF_00934135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00934128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00934136 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37634MF_00934125, 1, (STRLEN(?templateMotifCigarP37634MF_00934125) - STRLEN(REPLACE(?templateMotifCigarP37634MF_00934125, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP37634126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37634MF_00934127, 1, (STRLEN(?targetMotifMatchCigarP37634MF_00934127) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_00934127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37634MF_00934127, 1, (STRLEN(?targetMotifMatchCigarP37634MF_00934127) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_00934127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_00934128) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP37634145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37634147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37634MF_00934140 .
?templateMotifSequenceMatchRegionP37634145 faldo:begin ?templateMotifSequenceMatchBeginP37634146 .
?templateMotifSequenceMatchBeginP37634146 faldo:position ?templateMotifSequenceMatchBeginPositionP37634141 ;
faldo:reference isoform:P37634-1 .
?templateMotifSequenceProfileAlignmentOperationP37634147 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00934151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37634MF_00934142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00934150 .
?targetMotifMatchRegionMatchBeginMF_00934150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00934143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00934151 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37634MF_00934140, 1, (STRLEN(?templateMotifCigarP37634MF_00934140) - STRLEN(REPLACE(?templateMotifCigarP37634MF_00934140, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP37634141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37634MF_00934142, 1, (STRLEN(?targetMotifMatchCigarP37634MF_00934142) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_00934142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37634MF_00934142, 1, (STRLEN(?targetMotifMatchCigarP37634MF_00934142) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_00934142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_00934143) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP37634160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37634162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37634MF_00934155 .
?templateMotifSequenceMatchRegionP37634160 faldo:begin ?templateMotifSequenceMatchBeginP37634161 .
?templateMotifSequenceMatchBeginP37634161 faldo:position ?templateMotifSequenceMatchBeginPositionP37634156 ;
faldo:reference isoform:P37634-1 .
?templateMotifSequenceProfileAlignmentOperationP37634162 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00934166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37634MF_00934157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00934165 .
?targetMotifMatchRegionMatchBeginMF_00934165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00934158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00934166 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37634MF_00934155, 1, (STRLEN(?templateMotifCigarP37634MF_00934155) - STRLEN(REPLACE(?templateMotifCigarP37634MF_00934155, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP37634156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37634MF_00934157, 1, (STRLEN(?targetMotifMatchCigarP37634MF_00934157) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_00934157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37634MF_00934157, 1, (STRLEN(?targetMotifMatchCigarP37634MF_00934157) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_00934157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_00934158) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP37634175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37634177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37634MF_00934170 .
?templateMotifSequenceMatchRegionP37634175 faldo:begin ?templateMotifSequenceMatchBeginP37634176 .
?templateMotifSequenceMatchBeginP37634176 faldo:position ?templateMotifSequenceMatchBeginPositionP37634171 ;
faldo:reference isoform:P37634-1 .
?templateMotifSequenceProfileAlignmentOperationP37634177 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00934181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37634MF_00934172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00934180 .
?targetMotifMatchRegionMatchBeginMF_00934180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00934173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00934181 edam:has_input signature:MF_00934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37634MF_00934170, 1, (STRLEN(?templateMotifCigarP37634MF_00934170) - STRLEN(REPLACE(?templateMotifCigarP37634MF_00934170, CONCAT('^(?:-*[^-]){', STR(((4 - ?templateMotifSequenceMatchBeginPositionP37634171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37634MF_00934172, 1, (STRLEN(?targetMotifMatchCigarP37634MF_00934172) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_00934172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37634MF_00934172, 1, (STRLEN(?targetMotifMatchCigarP37634MF_00934172) - STRLEN(REPLACE(?targetMotifMatchCigarP37634MF_00934172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_00934173) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00934a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
}
"xsd:string |
