| http://purl.uniprot.org/unirules/MF_00937#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:326373 up:source unirule:MF_00937 .
_:326374 up:source unirule:MF_00937 .
_:326375 up:source unirule:MF_00937 .
_:326376 up:source unirule:MF_00937 .
_:326377 up:source unirule:MF_00937 .
_:326378 up:source unirule:MF_00937 .
_:326379 up:source unirule:MF_00937 .
_:326380 up:source unirule:MF_00937 .
_:326381 up:source unirule:MF_00937 .
_:326382 up:source unirule:MF_00937 .
_:326383 up:source unirule:MF_00937 .
_:326384 up:source unirule:MF_00937 .
_:326385 up:source unirule:MF_00937 .
_:326386 up:source unirule:MF_00937 .
_:326387 up:source unirule:MF_00937 .
_:326388 up:source unirule:MF_00937 .
_:326389 up:source unirule:MF_00937 .
_:326390 up:source unirule:MF_00937 .
_:326391 up:source unirule:MF_00937 .
_:326392 up:source unirule:MF_00937 .
_:326393 up:source unirule:MF_00937 .
_:326394 up:source unirule:MF_00937 .
_:326395 up:source unirule:MF_00937 .
_:326396 up:source unirule:MF_00937 .
_:326397 up:source unirule:MF_00937 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0003677 ,
GO:0003918 ,
GO:0006265 ,
GO:0007059 ,
GO:0019897 ,
keyword:1003 ,
keyword:238 ,
keyword:413 ,
keyword:472 ,
keyword:799 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.6.2.2' ;
up:fullName 'DNA topoisomerase 4 subunit A' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Topoisomerase IV subunit A' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'parC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer composed of ParC and ParE.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 2 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment "O-(5'-phospho-DNA)-tyrosine intermediate" .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
_:326398 a rdf:Statement ;
up:attribution _:326373 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:326399 a rdf:Statement ;
up:attribution _:326374 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:326400 a rdf:Statement ;
up:attribution _:326375 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:326401 a rdf:Statement ;
up:attribution _:326376 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:326402 a rdf:Statement ;
up:attribution _:326377 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:326403 a rdf:Statement ;
up:attribution _:326378 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:326404 a rdf:Statement ;
up:attribution _:326379 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:326405 a rdf:Statement ;
up:attribution _:326380 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:326406 a rdf:Statement ;
up:attribution _:326381 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:326407 a rdf:Statement ;
up:attribution _:326382 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:326408 a rdf:Statement ;
up:attribution _:326383 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:326409 a rdf:Statement ;
up:attribution _:326384 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:326410 a rdf:Statement ;
up:attribution _:326385 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:799 .
_:326411 a rdf:Statement ;
up:attribution _:326386 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:326412 a rdf:Statement ;
up:attribution _:326387 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003918 .
_:326413 a rdf:Statement ;
up:attribution _:326388 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007059 .
_:326414 a rdf:Statement ;
up:attribution _:326389 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006265 .
_:326415 a rdf:Statement ;
up:attribution _:326390 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019897 .
_:326416 a rdf:Statement ;
up:source unirule:MF_00937 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:326417 a rdf:Statement ;
up:attribution _:326391 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:326418 a rdf:Statement ;
up:source unirule:MF_00937 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:326419 a rdf:Statement ;
up:attribution _:326392 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:326420 a rdf:Statement ;
up:source unirule:MF_00937 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:326421 a rdf:Statement ;
up:attribution _:326393 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:326422 a rdf:Statement ;
up:source unirule:MF_00937 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:326423 a rdf:Statement ;
up:attribution _:326394 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:326424 a rdf:Statement ;
up:source unirule:MF_00937 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:326425 a rdf:Statement ;
up:attribution _:326395 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:326426 a rdf:Statement ;
up:source unirule:MF_00937 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:326427 a rdf:Statement ;
up:attribution _:326396 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:326428 a rdf:Statement ;
up:source unirule:MF_00937 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:326429 a rdf:Statement ;
up:attribution _:326397 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00937
#Rule MF_00937 Created by:? on:2013-01-21 Modified by:Catherine Rivoire on:2023-10-10
VALUES ?supertaxon52 {taxon:1239 taxon:31969}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00937 .
?thisOrganism rdfs:subClassOf+ ?supertaxon52 .
BIND(URI(CONCAT(STR(?this), '#MF_00937a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionP7252558 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7252560 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72525MF_0093753 .
?templateMotifSequenceMatchRegionP7252558 faldo:begin ?templateMotifSequenceMatchBeginP7252559 .
?templateMotifSequenceMatchBeginP7252559 faldo:position ?templateMotifSequenceMatchBeginPositionP7252554 ;
faldo:reference isoform:P72525-1 .
?templateMotifSequenceProfileAlignmentOperationP7252560 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093764 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72525MF_0093755 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093763 .
?targetMotifMatchRegionMatchBeginMF_0093763 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093756 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093764 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72525MF_0093753, 1, (STRLEN(?templateMotifCigarP72525MF_0093753) - STRLEN(REPLACE(?templateMotifCigarP72525MF_0093753, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP7252554) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72525MF_0093755, 1, (STRLEN(?targetMotifMatchCigarP72525MF_0093755) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_0093755, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72525MF_0093755, 1, (STRLEN(?targetMotifMatchCigarP72525MF_0093755) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_0093755, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0093756) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP7252573 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7252575 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72525MF_0093768 .
?templateMotifSequenceMatchRegionP7252573 faldo:begin ?templateMotifSequenceMatchBeginP7252574 .
?templateMotifSequenceMatchBeginP7252574 faldo:position ?templateMotifSequenceMatchBeginPositionP7252569 ;
faldo:reference isoform:P72525-1 .
?templateMotifSequenceProfileAlignmentOperationP7252575 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093779 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72525MF_0093770 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093778 .
?targetMotifMatchRegionMatchBeginMF_0093778 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093771 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093779 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72525MF_0093768, 1, (STRLEN(?templateMotifCigarP72525MF_0093768) - STRLEN(REPLACE(?templateMotifCigarP72525MF_0093768, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP7252569) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72525MF_0093770, 1, (STRLEN(?targetMotifMatchCigarP72525MF_0093770) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_0093770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72525MF_0093770, 1, (STRLEN(?targetMotifMatchCigarP72525MF_0093770) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_0093770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0093771) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP7252588 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7252590 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72525MF_0093783 .
?templateMotifSequenceMatchRegionP7252588 faldo:begin ?templateMotifSequenceMatchBeginP7252589 .
?templateMotifSequenceMatchBeginP7252589 faldo:position ?templateMotifSequenceMatchBeginPositionP7252584 ;
faldo:reference isoform:P72525-1 .
?templateMotifSequenceProfileAlignmentOperationP7252590 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093794 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72525MF_0093785 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093793 .
?targetMotifMatchRegionMatchBeginMF_0093793 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093786 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093794 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72525MF_0093783, 1, (STRLEN(?templateMotifCigarP72525MF_0093783) - STRLEN(REPLACE(?templateMotifCigarP72525MF_0093783, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP7252584) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72525MF_0093785, 1, (STRLEN(?targetMotifMatchCigarP72525MF_0093785) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_0093785, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72525MF_0093785, 1, (STRLEN(?targetMotifMatchCigarP72525MF_0093785) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_0093785, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0093786) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP72525103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72525105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72525MF_0093798 .
?templateMotifSequenceMatchRegionP72525103 faldo:begin ?templateMotifSequenceMatchBeginP72525104 .
?templateMotifSequenceMatchBeginP72525104 faldo:position ?templateMotifSequenceMatchBeginPositionP7252599 ;
faldo:reference isoform:P72525-1 .
?templateMotifSequenceProfileAlignmentOperationP72525105 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00937109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72525MF_00937100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00937108 .
?targetMotifMatchRegionMatchBeginMF_00937108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00937101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00937109 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72525MF_0093798, 1, (STRLEN(?templateMotifCigarP72525MF_0093798) - STRLEN(REPLACE(?templateMotifCigarP72525MF_0093798, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP7252599) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72525MF_00937100, 1, (STRLEN(?targetMotifMatchCigarP72525MF_00937100) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_00937100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72525MF_00937100, 1, (STRLEN(?targetMotifMatchCigarP72525MF_00937100) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_00937100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_00937101) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP72525118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72525120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72525MF_00937113 .
?templateMotifSequenceMatchRegionP72525118 faldo:begin ?templateMotifSequenceMatchBeginP72525119 .
?templateMotifSequenceMatchBeginP72525119 faldo:position ?templateMotifSequenceMatchBeginPositionP72525114 ;
faldo:reference isoform:P72525-1 .
?templateMotifSequenceProfileAlignmentOperationP72525120 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00937124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72525MF_00937115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00937123 .
?targetMotifMatchRegionMatchBeginMF_00937123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00937116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00937124 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72525MF_00937113, 1, (STRLEN(?templateMotifCigarP72525MF_00937113) - STRLEN(REPLACE(?templateMotifCigarP72525MF_00937113, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP72525114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72525MF_00937115, 1, (STRLEN(?targetMotifMatchCigarP72525MF_00937115) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_00937115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72525MF_00937115, 1, (STRLEN(?targetMotifMatchCigarP72525MF_00937115) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_00937115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_00937116) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP72525133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72525135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72525MF_00937128 .
?templateMotifSequenceMatchRegionP72525133 faldo:begin ?templateMotifSequenceMatchBeginP72525134 .
?templateMotifSequenceMatchBeginP72525134 faldo:position ?templateMotifSequenceMatchBeginPositionP72525129 ;
faldo:reference isoform:P72525-1 .
?templateMotifSequenceProfileAlignmentOperationP72525135 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00937139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72525MF_00937130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00937138 .
?targetMotifMatchRegionMatchBeginMF_00937138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00937131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00937139 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72525MF_00937128, 1, (STRLEN(?templateMotifCigarP72525MF_00937128) - STRLEN(REPLACE(?templateMotifCigarP72525MF_00937128, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP72525129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72525MF_00937130, 1, (STRLEN(?targetMotifMatchCigarP72525MF_00937130) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_00937130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72525MF_00937130, 1, (STRLEN(?targetMotifMatchCigarP72525MF_00937130) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_00937130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00937131) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP72525148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72525150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72525MF_00937143 .
?templateMotifSequenceMatchRegionP72525148 faldo:begin ?templateMotifSequenceMatchBeginP72525149 .
?templateMotifSequenceMatchBeginP72525149 faldo:position ?templateMotifSequenceMatchBeginPositionP72525144 ;
faldo:reference isoform:P72525-1 .
?templateMotifSequenceProfileAlignmentOperationP72525150 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00937154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72525MF_00937145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00937153 .
?targetMotifMatchRegionMatchBeginMF_00937153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00937146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00937154 edam:has_input signature:MF_00937 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72525MF_00937143, 1, (STRLEN(?templateMotifCigarP72525MF_00937143) - STRLEN(REPLACE(?templateMotifCigarP72525MF_00937143, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP72525144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72525MF_00937145, 1, (STRLEN(?targetMotifMatchCigarP72525MF_00937145) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_00937145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72525MF_00937145, 1, (STRLEN(?targetMotifMatchCigarP72525MF_00937145) - STRLEN(REPLACE(?targetMotifMatchCigarP72525MF_00937145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00937146) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00937a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
}
"xsd:string |
