| http://purl.uniprot.org/unirules/MF_00938#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:326886 up:source unirule:MF_00938 .
_:326887 up:source unirule:MF_00938 .
_:326888 up:source unirule:MF_00938 .
_:326889 up:source unirule:MF_00938 .
_:326890 up:source unirule:MF_00938 .
_:326891 up:source unirule:MF_00938 .
_:326892 up:source unirule:MF_00938 .
_:326893 up:source unirule:MF_00938 .
_:326894 up:source unirule:MF_00938 .
_:326895 up:source unirule:MF_00938 .
_:326896 up:source unirule:MF_00938 .
_:326897 up:source unirule:MF_00938 .
_:326898 up:source unirule:MF_00938 .
_:326899 up:source unirule:MF_00938 .
_:326900 up:source unirule:MF_00938 .
_:326901 up:source unirule:MF_00938 .
_:326902 up:source unirule:MF_00938 .
_:326903 up:source unirule:MF_00938 .
_:326904 up:source unirule:MF_00938 .
_:326905 up:source unirule:MF_00938 .
_:326906 up:source unirule:MF_00938 .
_:326907 up:source unirule:MF_00938 .
_:326908 up:source unirule:MF_00938 .
_:326909 up:source unirule:MF_00938 .
_:326910 up:source unirule:MF_00938 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0003677 ,
GO:0003918 ,
GO:0005524 ,
GO:0006265 ,
GO:0007059 ,
keyword:238 ,
keyword:413 ,
keyword:547 ,
keyword:67 ,
keyword:799 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.6.2.2' ;
up:fullName 'DNA topoisomerase 4 subunit B' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Topoisomerase IV subunit B' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'parE' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer composed of ParC and ParE.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the type II topoisomerase family. ParE type 1 subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:30616 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:30616 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:30616 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:30616 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:30616 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
_:326911 a rdf:Statement ;
up:attribution _:326886 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:326912 a rdf:Statement ;
up:attribution _:326887 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:326913 a rdf:Statement ;
up:attribution _:326888 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:326914 a rdf:Statement ;
up:attribution _:326889 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:326915 a rdf:Statement ;
up:attribution _:326890 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:326916 a rdf:Statement ;
up:attribution _:326891 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:326917 a rdf:Statement ;
up:attribution _:326892 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:326918 a rdf:Statement ;
up:attribution _:326893 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:326919 a rdf:Statement ;
up:attribution _:326894 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:326920 a rdf:Statement ;
up:attribution _:326895 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:326921 a rdf:Statement ;
up:attribution _:326896 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:326922 a rdf:Statement ;
up:attribution _:326897 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:799 .
_:326923 a rdf:Statement ;
up:attribution _:326898 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:326924 a rdf:Statement ;
up:attribution _:326899 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:326925 a rdf:Statement ;
up:attribution _:326900 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003918 .
_:326926 a rdf:Statement ;
up:attribution _:326901 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007059 .
_:326927 a rdf:Statement ;
up:attribution _:326902 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006265 .
_:326928 a rdf:Statement ;
up:source unirule:MF_00938 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:326929 a rdf:Statement ;
up:attribution _:326903 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:326930 a rdf:Statement ;
up:source unirule:MF_00938 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:326931 a rdf:Statement ;
up:attribution _:326904 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:326932 a rdf:Statement ;
up:source unirule:MF_00938 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:326933 a rdf:Statement ;
up:attribution _:326905 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:326934 a rdf:Statement ;
up:source unirule:MF_00938 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:326935 a rdf:Statement ;
up:attribution _:326906 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:326936 a rdf:Statement ;
up:source unirule:MF_00938 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:326937 a rdf:Statement ;
up:attribution _:326907 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:326938 a rdf:Statement ;
up:source unirule:MF_00938 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:326939 a rdf:Statement ;
up:attribution _:326908 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:326940 a rdf:Statement ;
up:source unirule:MF_00938 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:326941 a rdf:Statement ;
up:attribution _:326909 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:326942 a rdf:Statement ;
up:source unirule:MF_00938 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:326943 a rdf:Statement ;
up:attribution _:326910 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00938
#Rule MF_00938 Created by:? on:2013-01-23 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00938 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00938a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP2008366 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2008368 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP20083MF_0093861 .
?templateMotifSequenceMatchRegionP2008366 faldo:begin ?templateMotifSequenceMatchBeginP2008367 .
?templateMotifSequenceMatchBeginP2008367 faldo:position ?templateMotifSequenceMatchBeginPositionP2008362 ;
faldo:reference isoform:P20083-1 .
?templateMotifSequenceProfileAlignmentOperationP2008368 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093872 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP20083MF_0093863 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093871 .
?targetMotifMatchRegionMatchBeginMF_0093871 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093864 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093872 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP20083MF_0093861, 1, (STRLEN(?templateMotifCigarP20083MF_0093861) - STRLEN(REPLACE(?templateMotifCigarP20083MF_0093861, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionP2008362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP20083MF_0093863, 1, (STRLEN(?targetMotifMatchCigarP20083MF_0093863) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_0093863, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP20083MF_0093863, 1, (STRLEN(?targetMotifMatchCigarP20083MF_0093863) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_0093863, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0093864) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP20083MF_0093861, 1, (STRLEN(?templateMotifCigarP20083MF_0093861) - STRLEN(REPLACE(?templateMotifCigarP20083MF_0093861, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP2008362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP20083MF_0093863, 1, (STRLEN(?targetMotifMatchCigarP20083MF_0093863) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_0093863, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP20083MF_0093863, 1, (STRLEN(?targetMotifMatchCigarP20083MF_0093863) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_0093863, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0093864) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('GL[HN]GVG[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionP2008383 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2008385 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP20083MF_0093878 .
?templateMotifSequenceMatchRegionP2008383 faldo:begin ?templateMotifSequenceMatchBeginP2008384 .
?templateMotifSequenceMatchBeginP2008384 faldo:position ?templateMotifSequenceMatchBeginPositionP2008379 ;
faldo:reference isoform:P20083-1 .
?templateMotifSequenceProfileAlignmentOperationP2008385 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093889 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP20083MF_0093880 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093888 .
?targetMotifMatchRegionMatchBeginMF_0093888 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093881 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093889 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP20083MF_0093878, 1, (STRLEN(?templateMotifCigarP20083MF_0093878) - STRLEN(REPLACE(?templateMotifCigarP20083MF_0093878, CONCAT('^(?:-*[^-]){', STR(((5 - ?templateMotifSequenceMatchBeginPositionP2008379) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP20083MF_0093880, 1, (STRLEN(?targetMotifMatchCigarP20083MF_0093880) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_0093880, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP20083MF_0093880, 1, (STRLEN(?targetMotifMatchCigarP20083MF_0093880) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_0093880, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0093881) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP2008398 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP20083100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP20083MF_0093893 .
?templateMotifSequenceMatchRegionP2008398 faldo:begin ?templateMotifSequenceMatchBeginP2008399 .
?templateMotifSequenceMatchBeginP2008399 faldo:position ?templateMotifSequenceMatchBeginPositionP2008394 ;
faldo:reference isoform:P20083-1 .
?templateMotifSequenceProfileAlignmentOperationP20083100 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00938104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP20083MF_0093895 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00938103 .
?targetMotifMatchRegionMatchBeginMF_00938103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093896 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00938104 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP20083MF_0093893, 1, (STRLEN(?templateMotifCigarP20083MF_0093893) - STRLEN(REPLACE(?templateMotifCigarP20083MF_0093893, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP2008394) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP20083MF_0093895, 1, (STRLEN(?targetMotifMatchCigarP20083MF_0093895) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_0093895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP20083MF_0093895, 1, (STRLEN(?targetMotifMatchCigarP20083MF_0093895) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_0093895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0093896) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP20083113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP20083115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP20083MF_00938108 .
?templateMotifSequenceMatchRegionP20083113 faldo:begin ?templateMotifSequenceMatchBeginP20083114 .
?templateMotifSequenceMatchBeginP20083114 faldo:position ?templateMotifSequenceMatchBeginPositionP20083109 ;
faldo:reference isoform:P20083-1 .
?templateMotifSequenceProfileAlignmentOperationP20083115 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00938119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP20083MF_00938110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00938118 .
?targetMotifMatchRegionMatchBeginMF_00938118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00938111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00938119 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP20083MF_00938108, 1, (STRLEN(?templateMotifCigarP20083MF_00938108) - STRLEN(REPLACE(?templateMotifCigarP20083MF_00938108, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP20083109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP20083MF_00938110, 1, (STRLEN(?targetMotifMatchCigarP20083MF_00938110) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_00938110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP20083MF_00938110, 1, (STRLEN(?targetMotifMatchCigarP20083MF_00938110) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_00938110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00938111) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP20083128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP20083130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP20083MF_00938123 .
?templateMotifSequenceMatchRegionP20083128 faldo:begin ?templateMotifSequenceMatchBeginP20083129 .
?templateMotifSequenceMatchBeginP20083129 faldo:position ?templateMotifSequenceMatchBeginPositionP20083124 ;
faldo:reference isoform:P20083-1 .
?templateMotifSequenceProfileAlignmentOperationP20083130 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00938134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP20083MF_00938125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00938133 .
?targetMotifMatchRegionMatchBeginMF_00938133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00938126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00938134 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP20083MF_00938123, 1, (STRLEN(?templateMotifCigarP20083MF_00938123) - STRLEN(REPLACE(?templateMotifCigarP20083MF_00938123, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionP20083124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP20083MF_00938125, 1, (STRLEN(?targetMotifMatchCigarP20083MF_00938125) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_00938125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP20083MF_00938125, 1, (STRLEN(?targetMotifMatchCigarP20083MF_00938125) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_00938125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00938126) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP20083143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP20083145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP20083MF_00938138 .
?templateMotifSequenceMatchRegionP20083143 faldo:begin ?templateMotifSequenceMatchBeginP20083144 .
?templateMotifSequenceMatchBeginP20083144 faldo:position ?templateMotifSequenceMatchBeginPositionP20083139 ;
faldo:reference isoform:P20083-1 .
?templateMotifSequenceProfileAlignmentOperationP20083145 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00938149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP20083MF_00938140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00938148 .
?targetMotifMatchRegionMatchBeginMF_00938148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00938141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00938149 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP20083MF_00938138, 1, (STRLEN(?templateMotifCigarP20083MF_00938138) - STRLEN(REPLACE(?templateMotifCigarP20083MF_00938138, CONCAT('^(?:-*[^-]){', STR(((446 - ?templateMotifSequenceMatchBeginPositionP20083139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP20083MF_00938140, 1, (STRLEN(?targetMotifMatchCigarP20083MF_00938140) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_00938140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP20083MF_00938140, 1, (STRLEN(?targetMotifMatchCigarP20083MF_00938140) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_00938140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00938141) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP20083158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP20083160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP20083MF_00938153 .
?templateMotifSequenceMatchRegionP20083158 faldo:begin ?templateMotifSequenceMatchBeginP20083159 .
?templateMotifSequenceMatchBeginP20083159 faldo:position ?templateMotifSequenceMatchBeginPositionP20083154 ;
faldo:reference isoform:P20083-1 .
?templateMotifSequenceProfileAlignmentOperationP20083160 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00938164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP20083MF_00938155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00938163 .
?targetMotifMatchRegionMatchBeginMF_00938163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00938156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00938164 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP20083MF_00938153, 1, (STRLEN(?templateMotifCigarP20083MF_00938153) - STRLEN(REPLACE(?templateMotifCigarP20083MF_00938153, CONCAT('^(?:-*[^-]){', STR(((497 - ?templateMotifSequenceMatchBeginPositionP20083154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP20083MF_00938155, 1, (STRLEN(?targetMotifMatchCigarP20083MF_00938155) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_00938155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP20083MF_00938155, 1, (STRLEN(?targetMotifMatchCigarP20083MF_00938155) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_00938155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00938156) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionP20083173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP20083175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP20083MF_00938168 .
?templateMotifSequenceMatchRegionP20083173 faldo:begin ?templateMotifSequenceMatchBeginP20083174 .
?templateMotifSequenceMatchBeginP20083174 faldo:position ?templateMotifSequenceMatchBeginPositionP20083169 ;
faldo:reference isoform:P20083-1 .
?templateMotifSequenceProfileAlignmentOperationP20083175 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00938179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP20083MF_00938170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00938178 .
?targetMotifMatchRegionMatchBeginMF_00938178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00938171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00938179 edam:has_input signature:MF_00938 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP20083MF_00938168, 1, (STRLEN(?templateMotifCigarP20083MF_00938168) - STRLEN(REPLACE(?templateMotifCigarP20083MF_00938168, CONCAT('^(?:-*[^-]){', STR(((615 - ?templateMotifSequenceMatchBeginPositionP20083169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP20083MF_00938170, 1, (STRLEN(?targetMotifMatchCigarP20083MF_00938170) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_00938170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP20083MF_00938170, 1, (STRLEN(?targetMotifMatchCigarP20083MF_00938170) - STRLEN(REPLACE(?targetMotifMatchCigarP20083MF_00938170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00938171) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00938a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
}
"xsd:string |
