| http://purl.uniprot.org/unirules/MF_00939#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:327400 up:source unirule:MF_00939 .
_:327401 up:source unirule:MF_00939 .
_:327402 up:source unirule:MF_00939 .
_:327403 up:source unirule:MF_00939 .
_:327404 up:source unirule:MF_00939 .
_:327405 up:source unirule:MF_00939 .
_:327406 up:source unirule:MF_00939 .
_:327407 up:source unirule:MF_00939 .
_:327408 up:source unirule:MF_00939 .
_:327409 up:source unirule:MF_00939 .
_:327410 up:source unirule:MF_00939 .
_:327411 up:source unirule:MF_00939 .
_:327412 up:source unirule:MF_00939 .
_:327413 up:source unirule:MF_00939 .
_:327414 up:source unirule:MF_00939 .
_:327415 up:source unirule:MF_00939 .
_:327416 up:source unirule:MF_00939 .
_:327417 up:source unirule:MF_00939 .
_:327418 up:source unirule:MF_00939 .
_:327419 up:source unirule:MF_00939 .
_:327420 up:source unirule:MF_00939 .
_:327421 up:source unirule:MF_00939 .
_:327422 up:source unirule:MF_00939 .
_:327423 up:source unirule:MF_00939 .
_:327424 up:source unirule:MF_00939 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0003677 ,
GO:0003918 ,
GO:0005524 ,
GO:0006265 ,
GO:0007059 ,
keyword:238 ,
keyword:413 ,
keyword:547 ,
keyword:67 ,
keyword:799 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.6.2.2' ;
up:fullName 'DNA topoisomerase 4 subunit B' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Topoisomerase IV subunit B' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'parE' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer composed of ParC and ParE.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the type II topoisomerase family. ParE type 2 subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:30616 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:30616 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:30616 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:30616 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:30616 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
_:327425 a rdf:Statement ;
up:attribution _:327400 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:327426 a rdf:Statement ;
up:attribution _:327401 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:327427 a rdf:Statement ;
up:attribution _:327402 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:327428 a rdf:Statement ;
up:attribution _:327403 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:327429 a rdf:Statement ;
up:attribution _:327404 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:327430 a rdf:Statement ;
up:attribution _:327405 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:327431 a rdf:Statement ;
up:attribution _:327406 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:327432 a rdf:Statement ;
up:attribution _:327407 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:327433 a rdf:Statement ;
up:attribution _:327408 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:327434 a rdf:Statement ;
up:attribution _:327409 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:327435 a rdf:Statement ;
up:attribution _:327410 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:327436 a rdf:Statement ;
up:attribution _:327411 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:799 .
_:327437 a rdf:Statement ;
up:attribution _:327412 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:327438 a rdf:Statement ;
up:attribution _:327413 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:327439 a rdf:Statement ;
up:attribution _:327414 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003918 .
_:327440 a rdf:Statement ;
up:attribution _:327415 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007059 .
_:327441 a rdf:Statement ;
up:attribution _:327416 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006265 .
_:327442 a rdf:Statement ;
up:source unirule:MF_00939 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:327443 a rdf:Statement ;
up:attribution _:327417 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:327444 a rdf:Statement ;
up:source unirule:MF_00939 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:327445 a rdf:Statement ;
up:attribution _:327418 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:327446 a rdf:Statement ;
up:source unirule:MF_00939 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:327447 a rdf:Statement ;
up:attribution _:327419 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:327448 a rdf:Statement ;
up:source unirule:MF_00939 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:327449 a rdf:Statement ;
up:attribution _:327420 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:327450 a rdf:Statement ;
up:source unirule:MF_00939 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:327451 a rdf:Statement ;
up:attribution _:327421 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:327452 a rdf:Statement ;
up:source unirule:MF_00939 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:327453 a rdf:Statement ;
up:attribution _:327422 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:327454 a rdf:Statement ;
up:source unirule:MF_00939 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:327455 a rdf:Statement ;
up:attribution _:327423 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:327456 a rdf:Statement ;
up:source unirule:MF_00939 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:327457 a rdf:Statement ;
up:attribution _:327424 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00939
#Rule MF_00939 Created by:? on:2013-01-23 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon61 {taxon:1239 taxon:31969}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00939 .
?thisOrganism rdfs:subClassOf+ ?supertaxon61 .
BIND(URI(CONCAT(STR(?this), '#MF_00939a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionQ5996167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5996169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59961MF_0093962 .
?templateMotifSequenceMatchRegionQ5996167 faldo:begin ?templateMotifSequenceMatchBeginQ5996168 .
?templateMotifSequenceMatchBeginQ5996168 faldo:position ?templateMotifSequenceMatchBeginPositionQ5996163 ;
faldo:reference isoform:Q59961-1 .
?templateMotifSequenceProfileAlignmentOperationQ5996169 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093973 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59961MF_0093964 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093972 .
?targetMotifMatchRegionMatchBeginMF_0093972 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093965 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093973 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59961MF_0093962, 1, (STRLEN(?templateMotifCigarQ59961MF_0093962) - STRLEN(REPLACE(?templateMotifCigarQ59961MF_0093962, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionQ5996163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59961MF_0093964, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_0093964) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_0093964, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59961MF_0093964, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_0093964) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_0093964, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0093965) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59961MF_0093962, 1, (STRLEN(?templateMotifCigarQ59961MF_0093962) - STRLEN(REPLACE(?templateMotifCigarQ59961MF_0093962, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionQ5996163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59961MF_0093964, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_0093964) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_0093964, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59961MF_0093964, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_0093964) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_0093964, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0093965) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('GLHGVG[AS]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionQ5996184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5996186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59961MF_0093979 .
?templateMotifSequenceMatchRegionQ5996184 faldo:begin ?templateMotifSequenceMatchBeginQ5996185 .
?templateMotifSequenceMatchBeginQ5996185 faldo:position ?templateMotifSequenceMatchBeginPositionQ5996180 ;
faldo:reference isoform:Q59961-1 .
?templateMotifSequenceProfileAlignmentOperationQ5996186 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093990 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59961MF_0093981 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093989 .
?targetMotifMatchRegionMatchBeginMF_0093989 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093982 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093990 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59961MF_0093979, 1, (STRLEN(?templateMotifCigarQ59961MF_0093979) - STRLEN(REPLACE(?templateMotifCigarQ59961MF_0093979, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionQ5996180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59961MF_0093981, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_0093981) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_0093981, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59961MF_0093981, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_0093981) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_0093981, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0093982) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionQ5996199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59961101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59961MF_0093994 .
?templateMotifSequenceMatchRegionQ5996199 faldo:begin ?templateMotifSequenceMatchBeginQ59961100 .
?templateMotifSequenceMatchBeginQ59961100 faldo:position ?templateMotifSequenceMatchBeginPositionQ5996195 ;
faldo:reference isoform:Q59961-1 .
?templateMotifSequenceProfileAlignmentOperationQ59961101 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00939105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59961MF_0093996 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00939104 .
?targetMotifMatchRegionMatchBeginMF_00939104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093997 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00939105 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59961MF_0093994, 1, (STRLEN(?templateMotifCigarQ59961MF_0093994) - STRLEN(REPLACE(?templateMotifCigarQ59961MF_0093994, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionQ5996195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59961MF_0093996, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_0093996) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_0093996, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59961MF_0093996, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_0093996) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_0093996, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0093997) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionQ59961114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59961116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59961MF_00939109 .
?templateMotifSequenceMatchRegionQ59961114 faldo:begin ?templateMotifSequenceMatchBeginQ59961115 .
?templateMotifSequenceMatchBeginQ59961115 faldo:position ?templateMotifSequenceMatchBeginPositionQ59961110 ;
faldo:reference isoform:Q59961-1 .
?templateMotifSequenceProfileAlignmentOperationQ59961116 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00939120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59961MF_00939111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00939119 .
?targetMotifMatchRegionMatchBeginMF_00939119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00939112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00939120 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59961MF_00939109, 1, (STRLEN(?templateMotifCigarQ59961MF_00939109) - STRLEN(REPLACE(?templateMotifCigarQ59961MF_00939109, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionQ59961110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59961MF_00939111, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_00939111) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_00939111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59961MF_00939111, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_00939111) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_00939111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00939112) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionQ59961129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59961131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59961MF_00939124 .
?templateMotifSequenceMatchRegionQ59961129 faldo:begin ?templateMotifSequenceMatchBeginQ59961130 .
?templateMotifSequenceMatchBeginQ59961130 faldo:position ?templateMotifSequenceMatchBeginPositionQ59961125 ;
faldo:reference isoform:Q59961-1 .
?templateMotifSequenceProfileAlignmentOperationQ59961131 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00939135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59961MF_00939126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00939134 .
?targetMotifMatchRegionMatchBeginMF_00939134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00939127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00939135 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59961MF_00939124, 1, (STRLEN(?templateMotifCigarQ59961MF_00939124) - STRLEN(REPLACE(?templateMotifCigarQ59961MF_00939124, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionQ59961125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59961MF_00939126, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_00939126) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_00939126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59961MF_00939126, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_00939126) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_00939126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00939127) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionQ59961144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59961146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59961MF_00939139 .
?templateMotifSequenceMatchRegionQ59961144 faldo:begin ?templateMotifSequenceMatchBeginQ59961145 .
?templateMotifSequenceMatchBeginQ59961145 faldo:position ?templateMotifSequenceMatchBeginPositionQ59961140 ;
faldo:reference isoform:Q59961-1 .
?templateMotifSequenceProfileAlignmentOperationQ59961146 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00939150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59961MF_00939141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00939149 .
?targetMotifMatchRegionMatchBeginMF_00939149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00939142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00939150 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59961MF_00939139, 1, (STRLEN(?templateMotifCigarQ59961MF_00939139) - STRLEN(REPLACE(?templateMotifCigarQ59961MF_00939139, CONCAT('^(?:-*[^-]){', STR(((461 - ?templateMotifSequenceMatchBeginPositionQ59961140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59961MF_00939141, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_00939141) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_00939141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59961MF_00939141, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_00939141) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_00939141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00939142) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionQ59961159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59961161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59961MF_00939154 .
?templateMotifSequenceMatchRegionQ59961159 faldo:begin ?templateMotifSequenceMatchBeginQ59961160 .
?templateMotifSequenceMatchBeginQ59961160 faldo:position ?templateMotifSequenceMatchBeginPositionQ59961155 ;
faldo:reference isoform:Q59961-1 .
?templateMotifSequenceProfileAlignmentOperationQ59961161 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00939165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59961MF_00939156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00939164 .
?targetMotifMatchRegionMatchBeginMF_00939164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00939157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00939165 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59961MF_00939154, 1, (STRLEN(?templateMotifCigarQ59961MF_00939154) - STRLEN(REPLACE(?templateMotifCigarQ59961MF_00939154, CONCAT('^(?:-*[^-]){', STR(((513 - ?templateMotifSequenceMatchBeginPositionQ59961155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59961MF_00939156, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_00939156) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_00939156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59961MF_00939156, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_00939156) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_00939156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00939157) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionQ59961174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59961176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59961MF_00939169 .
?templateMotifSequenceMatchRegionQ59961174 faldo:begin ?templateMotifSequenceMatchBeginQ59961175 .
?templateMotifSequenceMatchBeginQ59961175 faldo:position ?templateMotifSequenceMatchBeginPositionQ59961170 ;
faldo:reference isoform:Q59961-1 .
?templateMotifSequenceProfileAlignmentOperationQ59961176 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00939180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59961MF_00939171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00939179 .
?targetMotifMatchRegionMatchBeginMF_00939179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00939172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00939180 edam:has_input signature:MF_00939 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59961MF_00939169, 1, (STRLEN(?templateMotifCigarQ59961MF_00939169) - STRLEN(REPLACE(?templateMotifCigarQ59961MF_00939169, CONCAT('^(?:-*[^-]){', STR(((629 - ?templateMotifSequenceMatchBeginPositionQ59961170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59961MF_00939171, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_00939171) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_00939171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59961MF_00939171, 1, (STRLEN(?targetMotifMatchCigarQ59961MF_00939171) - STRLEN(REPLACE(?targetMotifMatchCigarQ59961MF_00939171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00939172) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00939a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
}
"xsd:string |
