| http://purl.uniprot.org/unirules/MF_01021#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:357365 up:source unirule:MF_01021 .
_:357366 up:source unirule:MF_01021 .
_:357367 up:source unirule:MF_01021 .
_:357368 up:source unirule:MF_01021 .
_:357369 up:source unirule:MF_01021 .
_:357370 up:source unirule:MF_01021 .
_:357371 up:source unirule:MF_01021 .
_:357372 up:source unirule:MF_01021 .
_:357373 up:source unirule:MF_01021 .
_:357374 up:source unirule:MF_01021 .
_:357375 up:source unirule:MF_01021 .
_:357376 up:source unirule:MF_01021 .
_:357377 up:source unirule:MF_01021 .
_:357378 up:source unirule:MF_01021 .
_:357379 up:source unirule:MF_01021 .
_:357380 up:source unirule:MF_01021 .
_:357381 up:source unirule:MF_01021 .
_:357382 up:source unirule:MF_01021 .
_:357383 up:source unirule:MF_01021 .
_:357384 up:source unirule:MF_01021 .
_:357385 up:source unirule:MF_01021 .
_:357386 up:source unirule:MF_01021 .
_:357387 up:source unirule:MF_01021 .
_:357388 up:source unirule:MF_01021 .
_:357389 up:source unirule:MF_01021 .
_:357390 up:source unirule:MF_01021 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0000105 ,
GO:0004635 ,
GO:0005737 ,
keyword:28 ,
keyword:368 ,
keyword:378 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.4.19' ;
up:fullName 'Phosphoribosyl-AMP cyclohydrolase' ;
up:shortName 'PRA-CH' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'hisI' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 3/9.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PRA-CH family.' .
?case10 up:classifiedWith GO:0008270 ,
keyword:862 .
?case11 up:classifiedWith GO:0000287 ,
keyword:460 .
?case12 up:classifiedWith keyword:479 .
?pfs13 up:annotation ?annotation14 ,
?annotation20 ,
?annotation26 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:29105 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:29105 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:29105 .
?pfs32 up:annotation ?annotation33 ,
?annotation39 ,
?annotation45 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:18420 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:18420 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:18420 .
_:357391 a rdf:Statement ;
up:attribution _:357365 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:357392 a rdf:Statement ;
up:attribution _:357366 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:357393 a rdf:Statement ;
up:attribution _:357367 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:357394 a rdf:Statement ;
up:attribution _:357368 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:357395 a rdf:Statement ;
up:attribution _:357369 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:357396 a rdf:Statement ;
up:attribution _:357370 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:357397 a rdf:Statement ;
up:attribution _:357371 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:357398 a rdf:Statement ;
up:attribution _:357372 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:357399 a rdf:Statement ;
up:attribution _:357373 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:357400 a rdf:Statement ;
up:attribution _:357374 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:357401 a rdf:Statement ;
up:attribution _:357375 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:368 .
_:357402 a rdf:Statement ;
up:attribution _:357376 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:357403 a rdf:Statement ;
up:attribution _:357377 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004635 .
_:357404 a rdf:Statement ;
up:attribution _:357378 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000105 .
_:357405 a rdf:Statement ;
up:attribution _:357379 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:357406 a rdf:Statement ;
up:attribution _:357380 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:357407 a rdf:Statement ;
up:attribution _:357381 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:357408 a rdf:Statement ;
up:attribution _:357382 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:357409 a rdf:Statement ;
up:attribution _:357383 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:357410 a rdf:Statement ;
up:attribution _:357384 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:357411 a rdf:Statement ;
up:source unirule:MF_01021 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:357412 a rdf:Statement ;
up:attribution _:357385 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:357413 a rdf:Statement ;
up:source unirule:MF_01021 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:357414 a rdf:Statement ;
up:attribution _:357386 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:357415 a rdf:Statement ;
up:source unirule:MF_01021 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:357416 a rdf:Statement ;
up:attribution _:357387 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:357417 a rdf:Statement ;
up:source unirule:MF_01021 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:357418 a rdf:Statement ;
up:attribution _:357388 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:357419 a rdf:Statement ;
up:source unirule:MF_01021 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:357420 a rdf:Statement ;
up:attribution _:357389 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:357421 a rdf:Statement ;
up:source unirule:MF_01021 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:357422 a rdf:Statement ;
up:attribution _:357390 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01021
#Rule MF_01021 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-06-28
VALUES ?supertaxon51 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01021 .
?thisOrganism rdfs:subClassOf+ ?supertaxon51 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01019 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_01021a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01021a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01021a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01021a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01021a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01021a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01021a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionO2634757 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2634759 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26347MF_0102152 .
?templateMotifSequenceMatchRegionO2634757 faldo:begin ?templateMotifSequenceMatchBeginO2634758 .
?templateMotifSequenceMatchBeginO2634758 faldo:position ?templateMotifSequenceMatchBeginPositionO2634753 ;
faldo:reference isoform:O26347-1 .
?templateMotifSequenceProfileAlignmentOperationO2634759 edam:has_input signature:MF_01021 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0102163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26347MF_0102154 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0102162 .
?targetMotifMatchRegionMatchBeginMF_0102162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0102155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0102163 edam:has_input signature:MF_01021 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26347MF_0102152, 1, (STRLEN(?templateMotifCigarO26347MF_0102152) - STRLEN(REPLACE(?templateMotifCigarO26347MF_0102152, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionO2634753) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26347MF_0102154, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102154) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26347MF_0102154, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102154) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0102155) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26347MF_0102152, 1, (STRLEN(?templateMotifCigarO26347MF_0102152) - STRLEN(REPLACE(?templateMotifCigarO26347MF_0102152, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionO2634753) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26347MF_0102154, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102154) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26347MF_0102154, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102154) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0102155) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26347MF_0102152, 1, (STRLEN(?templateMotifCigarO26347MF_0102152) - STRLEN(REPLACE(?templateMotifCigarO26347MF_0102152, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionO2634753) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26347MF_0102154, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102154) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26347MF_0102154, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102154) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0102155) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'C')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionO2634778 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2634780 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26347MF_0102173 .
?templateMotifSequenceMatchRegionO2634778 faldo:begin ?templateMotifSequenceMatchBeginO2634779 .
?templateMotifSequenceMatchBeginO2634779 faldo:position ?templateMotifSequenceMatchBeginPositionO2634774 ;
faldo:reference isoform:O26347-1 .
?templateMotifSequenceProfileAlignmentOperationO2634780 edam:has_input signature:MF_01021 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0102184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26347MF_0102175 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0102183 .
?targetMotifMatchRegionMatchBeginMF_0102183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0102176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0102184 edam:has_input signature:MF_01021 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26347MF_0102173, 1, (STRLEN(?templateMotifCigarO26347MF_0102173) - STRLEN(REPLACE(?templateMotifCigarO26347MF_0102173, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionO2634774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26347MF_0102175, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102175) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26347MF_0102175, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102175) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0102176) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26347MF_0102173, 1, (STRLEN(?templateMotifCigarO26347MF_0102173) - STRLEN(REPLACE(?templateMotifCigarO26347MF_0102173, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionO2634774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26347MF_0102175, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102175) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26347MF_0102175, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102175) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0102176) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs2t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26347MF_0102173, 1, (STRLEN(?templateMotifCigarO26347MF_0102173) - STRLEN(REPLACE(?templateMotifCigarO26347MF_0102173, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionO2634774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26347MF_0102175, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102175) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26347MF_0102175, 1, (STRLEN(?targetMotifMatchCigarO26347MF_0102175) - STRLEN(REPLACE(?targetMotifMatchCigarO26347MF_0102175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0102176) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'D')) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag94) .
}
BIND(IF(BOUND(?tagFTGRP_2), ?caseWithTag94, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag95) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag95, ?UNBOUND_VARIABLE) AS ?case11) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag96) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag96, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
