| http://purl.uniprot.org/unirules/MF_01057#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:370509 up:source unirule:MF_01057 .
_:370510 up:source unirule:MF_01057 .
_:370511 up:source unirule:MF_01057 .
_:370512 up:source unirule:MF_01057 .
_:370513 up:source unirule:MF_01057 .
_:370514 up:source unirule:MF_01057 .
_:370515 up:source unirule:MF_01057 .
_:370516 up:source unirule:MF_01057 .
_:370517 up:source unirule:MF_01057 .
_:370518 up:source unirule:MF_01057 .
_:370519 up:source unirule:MF_01057 .
_:370520 up:source unirule:MF_01057 .
_:370521 up:source unirule:MF_01057 .
_:370522 up:source unirule:MF_01057 .
_:370523 up:source unirule:MF_01057 .
_:370524 up:source unirule:MF_01057 .
_:370525 up:source unirule:MF_01057 .
_:370526 up:source unirule:MF_01057 .
_:370527 up:source unirule:MF_01057 .
_:370528 up:source unirule:MF_01057 .
_:370529 up:source unirule:MF_01057 .
_:370530 up:source unirule:MF_01057 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0006400 ,
GO:0008176 ,
keyword:489 ,
keyword:808 ,
keyword:819 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.33' ;
up:fullName 'tRNA (guanine-N(7)-)-methyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'tRNA (guanine(46)-N(7))-methyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA(m7G46)-methyltransferase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'trmB' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'tRNA modification; N(7)-methylguanine-tRNA biosynthesis.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with RNA' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf ?molecule21 .
?molecule21 rdfs:label 'substrate' .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:59789 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:59789 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:59789 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:59789 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf ?molecule57 .
?molecule57 rdfs:label 'substrate' .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf ?molecule65 .
?molecule65 rdfs:label 'substrate' .
_:370531 a rdf:Statement ;
up:attribution _:370509 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:370532 a rdf:Statement ;
up:attribution _:370510 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:370533 a rdf:Statement ;
up:attribution _:370511 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:370534 a rdf:Statement ;
up:attribution _:370512 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:370535 a rdf:Statement ;
up:attribution _:370513 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:370536 a rdf:Statement ;
up:attribution _:370514 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:370537 a rdf:Statement ;
up:attribution _:370515 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:370538 a rdf:Statement ;
up:attribution _:370516 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:370539 a rdf:Statement ;
up:attribution _:370517 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:370540 a rdf:Statement ;
up:attribution _:370518 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:370541 a rdf:Statement ;
up:attribution _:370519 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:370542 a rdf:Statement ;
up:attribution _:370520 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:370543 a rdf:Statement ;
up:attribution _:370521 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008176 .
_:370544 a rdf:Statement ;
up:attribution _:370522 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006400 .
_:370545 a rdf:Statement ;
up:source unirule:MF_01057 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:370546 a rdf:Statement ;
up:attribution _:370523 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:370547 a rdf:Statement ;
up:source unirule:MF_01057 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:370548 a rdf:Statement ;
up:attribution _:370524 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:370549 a rdf:Statement ;
up:source unirule:MF_01057 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:370550 a rdf:Statement ;
up:attribution _:370525 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:370551 a rdf:Statement ;
up:source unirule:MF_01057 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:370552 a rdf:Statement ;
up:attribution _:370526 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:370553 a rdf:Statement ;
up:source unirule:MF_01057 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:370554 a rdf:Statement ;
up:attribution _:370527 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:370555 a rdf:Statement ;
up:source unirule:MF_01057 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:370556 a rdf:Statement ;
up:attribution _:370528 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:370557 a rdf:Statement ;
up:source unirule:MF_01057 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:370558 a rdf:Statement ;
up:attribution _:370529 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:370559 a rdf:Statement ;
up:source unirule:MF_01057 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:370560 a rdf:Statement ;
up:attribution _:370530 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01057
#Rule MF_01057 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2023-10-13
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01057 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01057a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP0A8I573 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8I575 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8I5MF_0105768 .
?templateMotifSequenceMatchRegionP0A8I573 faldo:begin ?templateMotifSequenceMatchBeginP0A8I574 .
?templateMotifSequenceMatchBeginP0A8I574 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8I569 ;
faldo:reference isoform:P0A8I5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8I575 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0105779 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8I5MF_0105770 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0105778 .
?targetMotifMatchRegionMatchBeginMF_0105778 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0105771 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0105779 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8I5MF_0105768, 1, (STRLEN(?templateMotifCigarP0A8I5MF_0105768) - STRLEN(REPLACE(?templateMotifCigarP0A8I5MF_0105768, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP0A8I569) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8I5MF_0105770, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_0105770) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_0105770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8I5MF_0105770, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_0105770) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_0105770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0105771) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8I5MF_0105768, 1, (STRLEN(?templateMotifCigarP0A8I5MF_0105768) - STRLEN(REPLACE(?templateMotifCigarP0A8I5MF_0105768, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP0A8I569) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8I5MF_0105770, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_0105770) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_0105770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8I5MF_0105770, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_0105770) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_0105770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0105771) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER (REGEX('[KR][KH][EN]KRR', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP0A8I590 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8I592 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8I5MF_0105785 .
?templateMotifSequenceMatchRegionP0A8I590 faldo:begin ?templateMotifSequenceMatchBeginP0A8I591 .
?templateMotifSequenceMatchBeginP0A8I591 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8I586 ;
faldo:reference isoform:P0A8I5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8I592 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0105796 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8I5MF_0105787 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0105795 .
?targetMotifMatchRegionMatchBeginMF_0105795 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0105788 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0105796 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8I5MF_0105785, 1, (STRLEN(?templateMotifCigarP0A8I5MF_0105785) - STRLEN(REPLACE(?templateMotifCigarP0A8I5MF_0105785, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP0A8I586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8I5MF_0105787, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_0105787) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_0105787, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8I5MF_0105787, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_0105787) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_0105787, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0105788) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8I5MF_0105785, 1, (STRLEN(?templateMotifCigarP0A8I5MF_0105785) - STRLEN(REPLACE(?templateMotifCigarP0A8I5MF_0105785, CONCAT('^(?:-*[^-]){', STR(((220 - ?templateMotifSequenceMatchBeginPositionP0A8I586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8I5MF_0105787, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_0105787) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_0105787, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8I5MF_0105787, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_0105787) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_0105787, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0105788) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX][YF]E', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP0A8I5107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8I5109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8I5MF_01057102 .
?templateMotifSequenceMatchRegionP0A8I5107 faldo:begin ?templateMotifSequenceMatchBeginP0A8I5108 .
?templateMotifSequenceMatchBeginP0A8I5108 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8I5103 ;
faldo:reference isoform:P0A8I5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8I5109 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01057113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8I5MF_01057104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01057112 .
?targetMotifMatchRegionMatchBeginMF_01057112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01057105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01057113 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8I5MF_01057102, 1, (STRLEN(?templateMotifCigarP0A8I5MF_01057102) - STRLEN(REPLACE(?templateMotifCigarP0A8I5MF_01057102, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP0A8I5103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057104, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057104, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01057105) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP0A8I5122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8I5124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8I5MF_01057117 .
?templateMotifSequenceMatchRegionP0A8I5122 faldo:begin ?templateMotifSequenceMatchBeginP0A8I5123 .
?templateMotifSequenceMatchBeginP0A8I5123 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8I5118 ;
faldo:reference isoform:P0A8I5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8I5124 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01057128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8I5MF_01057119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01057127 .
?targetMotifMatchRegionMatchBeginMF_01057127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01057120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01057128 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8I5MF_01057117, 1, (STRLEN(?templateMotifCigarP0A8I5MF_01057117) - STRLEN(REPLACE(?templateMotifCigarP0A8I5MF_01057117, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP0A8I5118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057119, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057119, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01057120) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP0A8I5137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8I5139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8I5MF_01057132 .
?templateMotifSequenceMatchRegionP0A8I5137 faldo:begin ?templateMotifSequenceMatchBeginP0A8I5138 .
?templateMotifSequenceMatchBeginP0A8I5138 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8I5133 ;
faldo:reference isoform:P0A8I5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8I5139 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01057143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8I5MF_01057134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01057142 .
?targetMotifMatchRegionMatchBeginMF_01057142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01057135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01057143 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8I5MF_01057132, 1, (STRLEN(?templateMotifCigarP0A8I5MF_01057132) - STRLEN(REPLACE(?templateMotifCigarP0A8I5MF_01057132, CONCAT('^(?:-*[^-]){', STR(((121 - ?templateMotifSequenceMatchBeginPositionP0A8I5133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057134, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057134, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01057135) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER (REGEX('[DEN]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP0A8I5152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8I5154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8I5MF_01057147 .
?templateMotifSequenceMatchRegionP0A8I5152 faldo:begin ?templateMotifSequenceMatchBeginP0A8I5153 .
?templateMotifSequenceMatchBeginP0A8I5153 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8I5148 ;
faldo:reference isoform:P0A8I5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8I5154 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01057158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8I5MF_01057149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01057157 .
?targetMotifMatchRegionMatchBeginMF_01057157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01057150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01057158 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8I5MF_01057147, 1, (STRLEN(?templateMotifCigarP0A8I5MF_01057147) - STRLEN(REPLACE(?templateMotifCigarP0A8I5MF_01057147, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP0A8I5148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057149, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057149, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_01057150) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionP0A8I5167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8I5169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8I5MF_01057162 .
?templateMotifSequenceMatchRegionP0A8I5167 faldo:begin ?templateMotifSequenceMatchBeginP0A8I5168 .
?templateMotifSequenceMatchBeginP0A8I5168 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8I5163 ;
faldo:reference isoform:P0A8I5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8I5169 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01057173 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8I5MF_01057164 .
?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01057172 .
?targetMotifMatchRegionMatchBeginMF_01057172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01057165 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01057173 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8I5MF_01057162, 1, (STRLEN(?templateMotifCigarP0A8I5MF_01057162) - STRLEN(REPLACE(?templateMotifCigarP0A8I5MF_01057162, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP0A8I5163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057164, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057164) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057164, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057164) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01057165) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionP0A8I5182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8I5184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8I5MF_01057177 .
?templateMotifSequenceMatchRegionP0A8I5182 faldo:begin ?templateMotifSequenceMatchBeginP0A8I5183 .
?templateMotifSequenceMatchBeginP0A8I5183 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8I5178 ;
faldo:reference isoform:P0A8I5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8I5184 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01057188 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8I5MF_01057179 .
?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01057187 .
?targetMotifMatchRegionMatchBeginMF_01057187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01057180 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01057188 edam:has_input signature:MF_01057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8I5MF_01057177, 1, (STRLEN(?templateMotifCigarP0A8I5MF_01057177) - STRLEN(REPLACE(?templateMotifCigarP0A8I5MF_01057177, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP0A8I5178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057179, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057179) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8I5MF_01057179, 1, (STRLEN(?targetMotifMatchCigarP0A8I5MF_01057179) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8I5MF_01057179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01057180) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01057a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case9) .
}
}
"xsd:string |
