| http://purl.uniprot.org/unirules/MF_01084#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:377568 up:source unirule:MF_01084 .
_:377569 up:source unirule:MF_01084 .
_:377570 up:source unirule:MF_01084 .
_:377571 up:source unirule:MF_01084 .
_:377572 up:source unirule:MF_01084 .
_:377573 up:source unirule:MF_01084 .
_:377574 up:source unirule:MF_01084 .
_:377575 up:source unirule:MF_01084 .
_:377576 up:source unirule:MF_01084 .
_:377577 up:source unirule:MF_01084 .
_:377578 up:source unirule:MF_01084 .
_:377579 up:source unirule:MF_01084 .
_:377580 up:source unirule:MF_01084 .
_:377581 up:source unirule:MF_01084 .
_:377582 up:source unirule:MF_01084 .
_:377583 up:source unirule:MF_01084 .
_:377584 up:source unirule:MF_01084 .
_:377585 up:source unirule:MF_01084 .
_:377586 up:source unirule:MF_01084 .
_:377587 up:source unirule:MF_01084 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004164 ,
GO:0017183 ,
keyword:489 ,
keyword:808 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.98' ;
up:fullName 'Diphthine synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Diphthamide biosynthesis methyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'dphB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Protein modification; peptidyl-diphthamide biosynthesis.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the diphthine synthase family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:59789 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:59789 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:59789 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:59789 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:59789 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:59789 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:59789 .
_:377588 a rdf:Statement ;
up:attribution _:377568 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:377589 a rdf:Statement ;
up:attribution _:377569 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:377590 a rdf:Statement ;
up:attribution _:377570 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:377591 a rdf:Statement ;
up:attribution _:377571 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:377592 a rdf:Statement ;
up:attribution _:377572 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:377593 a rdf:Statement ;
up:attribution _:377573 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:377594 a rdf:Statement ;
up:attribution _:377574 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:377595 a rdf:Statement ;
up:attribution _:377575 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:377596 a rdf:Statement ;
up:attribution _:377576 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:377597 a rdf:Statement ;
up:attribution _:377577 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:377598 a rdf:Statement ;
up:attribution _:377578 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:377599 a rdf:Statement ;
up:attribution _:377579 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004164 .
_:377600 a rdf:Statement ;
up:attribution _:377580 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0017183 .
_:377601 a rdf:Statement ;
up:source unirule:MF_01084 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:377602 a rdf:Statement ;
up:attribution _:377581 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:377603 a rdf:Statement ;
up:source unirule:MF_01084 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:377604 a rdf:Statement ;
up:attribution _:377582 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:377605 a rdf:Statement ;
up:source unirule:MF_01084 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:377606 a rdf:Statement ;
up:attribution _:377583 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:377607 a rdf:Statement ;
up:source unirule:MF_01084 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:377608 a rdf:Statement ;
up:attribution _:377584 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:377609 a rdf:Statement ;
up:source unirule:MF_01084 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:377610 a rdf:Statement ;
up:attribution _:377585 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:377611 a rdf:Statement ;
up:source unirule:MF_01084 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:377612 a rdf:Statement ;
up:attribution _:377586 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:377613 a rdf:Statement ;
up:source unirule:MF_01084 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:377614 a rdf:Statement ;
up:attribution _:377587 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01084
#Rule MF_01084 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01084 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01084a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionO5845663 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5845665 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58456MF_0108458 .
?templateMotifSequenceMatchRegionO5845663 faldo:begin ?templateMotifSequenceMatchBeginO5845664 .
?templateMotifSequenceMatchBeginO5845664 faldo:position ?templateMotifSequenceMatchBeginPositionO5845659 ;
faldo:reference isoform:O58456-1 .
?templateMotifSequenceProfileAlignmentOperationO5845665 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0108469 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58456MF_0108460 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0108468 .
?targetMotifMatchRegionMatchBeginMF_0108468 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108461 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0108469 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_0108458, 1, (STRLEN(?templateMotifCigarO58456MF_0108458) - STRLEN(REPLACE(?templateMotifCigarO58456MF_0108458, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionO5845659) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_0108460, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108460) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_0108460, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108460) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0108461) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_0108458, 1, (STRLEN(?templateMotifCigarO58456MF_0108458) - STRLEN(REPLACE(?templateMotifCigarO58456MF_0108458, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionO5845659) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_0108460, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108460) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_0108460, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108460) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0108461) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('[STN][IGVA]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionO5845680 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5845682 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58456MF_0108475 .
?templateMotifSequenceMatchRegionO5845680 faldo:begin ?templateMotifSequenceMatchBeginO5845681 .
?templateMotifSequenceMatchBeginO5845681 faldo:position ?templateMotifSequenceMatchBeginPositionO5845676 ;
faldo:reference isoform:O58456-1 .
?templateMotifSequenceProfileAlignmentOperationO5845682 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0108486 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58456MF_0108477 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0108485 .
?targetMotifMatchRegionMatchBeginMF_0108485 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108478 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0108486 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_0108475, 1, (STRLEN(?templateMotifCigarO58456MF_0108475) - STRLEN(REPLACE(?templateMotifCigarO58456MF_0108475, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionO5845676) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_0108477, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108477) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_0108477, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108477) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0108478) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('[LI]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionO5845695 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5845697 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58456MF_0108490 .
?templateMotifSequenceMatchRegionO5845695 faldo:begin ?templateMotifSequenceMatchBeginO5845696 .
?templateMotifSequenceMatchBeginO5845696 faldo:position ?templateMotifSequenceMatchBeginPositionO5845691 ;
faldo:reference isoform:O58456-1 .
?templateMotifSequenceProfileAlignmentOperationO5845697 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01084101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58456MF_0108492 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01084100 .
?targetMotifMatchRegionMatchBeginMF_01084100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108493 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01084101 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_0108490, 1, (STRLEN(?templateMotifCigarO58456MF_0108490) - STRLEN(REPLACE(?templateMotifCigarO58456MF_0108490, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionO5845691) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_0108492, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108492) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_0108492, 1, (STRLEN(?targetMotifMatchCigarO58456MF_0108492) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_0108492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0108493) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionO58456110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58456112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58456MF_01084105 .
?templateMotifSequenceMatchRegionO58456110 faldo:begin ?templateMotifSequenceMatchBeginO58456111 .
?templateMotifSequenceMatchBeginO58456111 faldo:position ?templateMotifSequenceMatchBeginPositionO58456106 ;
faldo:reference isoform:O58456-1 .
?templateMotifSequenceProfileAlignmentOperationO58456112 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01084116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58456MF_01084107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01084115 .
?targetMotifMatchRegionMatchBeginMF_01084115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01084108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01084116 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_01084105, 1, (STRLEN(?templateMotifCigarO58456MF_01084105) - STRLEN(REPLACE(?templateMotifCigarO58456MF_01084105, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionO58456106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_01084107, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084107) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_01084107, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084107) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01084108) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER (REGEX('[VALMTIG]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionO58456125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58456127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58456MF_01084120 .
?templateMotifSequenceMatchRegionO58456125 faldo:begin ?templateMotifSequenceMatchBeginO58456126 .
?templateMotifSequenceMatchBeginO58456126 faldo:position ?templateMotifSequenceMatchBeginPositionO58456121 ;
faldo:reference isoform:O58456-1 .
?templateMotifSequenceProfileAlignmentOperationO58456127 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01084131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58456MF_01084122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01084130 .
?targetMotifMatchRegionMatchBeginMF_01084130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01084123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01084131 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_01084120, 1, (STRLEN(?templateMotifCigarO58456MF_01084120) - STRLEN(REPLACE(?templateMotifCigarO58456MF_01084120, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionO58456121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_01084122, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084122) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_01084122, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084122) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01084123) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER (REGEX('[LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionO58456140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58456142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58456MF_01084135 .
?templateMotifSequenceMatchRegionO58456140 faldo:begin ?templateMotifSequenceMatchBeginO58456141 .
?templateMotifSequenceMatchBeginO58456141 faldo:position ?templateMotifSequenceMatchBeginPositionO58456136 ;
faldo:reference isoform:O58456-1 .
?templateMotifSequenceProfileAlignmentOperationO58456142 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01084146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58456MF_01084137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01084145 .
?targetMotifMatchRegionMatchBeginMF_01084145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01084138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01084146 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_01084135, 1, (STRLEN(?templateMotifCigarO58456MF_01084135) - STRLEN(REPLACE(?templateMotifCigarO58456MF_01084135, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionO58456136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_01084137, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084137) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_01084137, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084137) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01084138) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER (REGEX('[ALVM]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionO58456155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58456157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58456MF_01084150 .
?templateMotifSequenceMatchRegionO58456155 faldo:begin ?templateMotifSequenceMatchBeginO58456156 .
?templateMotifSequenceMatchBeginO58456156 faldo:position ?templateMotifSequenceMatchBeginPositionO58456151 ;
faldo:reference isoform:O58456-1 .
?templateMotifSequenceProfileAlignmentOperationO58456157 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01084161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58456MF_01084152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01084160 .
?targetMotifMatchRegionMatchBeginMF_01084160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01084153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01084161 edam:has_input signature:MF_01084 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58456MF_01084150, 1, (STRLEN(?templateMotifCigarO58456MF_01084150) - STRLEN(REPLACE(?templateMotifCigarO58456MF_01084150, CONCAT('^(?:-*[^-]){', STR(((234 - ?templateMotifSequenceMatchBeginPositionO58456151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58456MF_01084152, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084152) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58456MF_01084152, 1, (STRLEN(?targetMotifMatchCigarO58456MF_01084152) - STRLEN(REPLACE(?targetMotifMatchCigarO58456MF_01084152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01084153) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER (REGEX('[HYQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01084a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
}
"xsd:string |
