| http://purl.uniprot.org/unirules/MF_01146#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:400659 up:source unirule:MF_01146 .
_:400660 up:source unirule:MF_01146 .
_:400661 up:source unirule:MF_01146 .
_:400662 up:source unirule:MF_01146 .
_:400663 up:source unirule:MF_01146 .
_:400664 up:source unirule:MF_01146 .
_:400665 up:source unirule:MF_01146 .
_:400666 up:source unirule:MF_01146 .
_:400667 up:source unirule:MF_01146 .
_:400668 up:source unirule:MF_01146 .
_:400669 up:source unirule:MF_01146 .
_:400670 up:source unirule:MF_01146 .
_:400671 up:source unirule:MF_01146 .
_:400672 up:source unirule:MF_01146 .
_:400673 up:source unirule:MF_01146 .
_:400674 up:source unirule:MF_01146 .
_:400675 up:source unirule:MF_01146 .
_:400676 up:source unirule:MF_01146 .
_:400677 up:source unirule:MF_01146 .
_:400678 up:source unirule:MF_01146 .
_:400679 up:source unirule:MF_01146 .
_:400680 up:source unirule:MF_01146 .
_:400681 up:source unirule:MF_01146 .
_:400682 up:source unirule:MF_01146 .
_:400683 up:source unirule:MF_01146 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0005886 ,
GO:0015250 ,
keyword:1003 ,
keyword:1133 ,
keyword:472 ,
keyword:812 ,
keyword:813 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Aquaporin Z' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'aqpZ' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MIP/aquaporin (TC 1.A.8) family.' .
?case7 up:classifiedWith keyword:677 .
?case8 up:classifiedWith keyword:997 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'NPA 2' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'NPA 1' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Involved in tetramerization or stability of the tetramer' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Selectivity filter' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Selectivity filter' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Selectivity filter' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Selectivity filter' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?sam52 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane53 faldo:begin ?transmembraneb54 ;
faldo:end ?transmembranee55 .
?transmembraneb54 faldo:position ?transmembranebp56 .
?transmembranee55 faldo:position ?transmembraneep57 .
?keyword58 up:range ?transmembrane53 .
?keyword59 up:range ?transmembrane53 .
?keyword60 up:range ?transmembrane53 .
_:400684 a rdf:Statement ;
up:attribution _:400659 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:400685 a rdf:Statement ;
up:attribution _:400660 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:400686 a rdf:Statement ;
up:attribution _:400661 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:400687 a rdf:Statement ;
up:attribution _:400662 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:400688 a rdf:Statement ;
up:attribution _:400663 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:400689 a rdf:Statement ;
up:attribution _:400664 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:400690 a rdf:Statement ;
up:attribution _:400665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:400691 a rdf:Statement ;
up:attribution _:400666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:400692 a rdf:Statement ;
up:attribution _:400667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:400693 a rdf:Statement ;
up:attribution _:400668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:400694 a rdf:Statement ;
up:attribution _:400669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:400695 a rdf:Statement ;
up:attribution _:400670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015250 .
_:400696 a rdf:Statement ;
up:attribution _:400671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:400697 a rdf:Statement ;
up:attribution _:400672 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:400698 a rdf:Statement ;
up:attribution _:400673 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:400699 a rdf:Statement ;
up:source unirule:MF_01146 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:400700 a rdf:Statement ;
up:attribution _:400674 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:400701 a rdf:Statement ;
up:source unirule:MF_01146 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:400702 a rdf:Statement ;
up:attribution _:400675 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:400703 a rdf:Statement ;
up:source unirule:MF_01146 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:400704 a rdf:Statement ;
up:attribution _:400676 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:400705 a rdf:Statement ;
up:source unirule:MF_01146 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:400706 a rdf:Statement ;
up:attribution _:400677 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:400707 a rdf:Statement ;
up:source unirule:MF_01146 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:400708 a rdf:Statement ;
up:attribution _:400678 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:400709 a rdf:Statement ;
up:source unirule:MF_01146 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:400710 a rdf:Statement ;
up:attribution _:400679 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:400711 a rdf:Statement ;
up:source unirule:MF_01146 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:400712 a rdf:Statement ;
up:attribution _:400680 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:400713 a rdf:Statement ;
up:attribution _:400681 ;
rdf:subject ?sam52 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:400714 a rdf:Statement ;
up:attribution _:400682 ;
rdf:subject ?sam52 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:400715 a rdf:Statement ;
up:attribution _:400683 ;
rdf:subject ?sam52 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01146
#Rule MF_01146 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01146 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01146a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP6084466 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6084468 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60844MF_0114661 .
?templateMotifSequenceMatchRegionP6084466 faldo:begin ?templateMotifSequenceMatchBeginP6084467 .
?templateMotifSequenceMatchBeginP6084467 faldo:position ?templateMotifSequenceMatchBeginPositionP6084462 ;
faldo:reference isoform:P60844-1 .
?templateMotifSequenceProfileAlignmentOperationP6084468 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0114672 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60844MF_0114663 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0114671 .
?targetMotifMatchRegionMatchBeginMF_0114671 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0114664 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0114672 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60844MF_0114661, 1, (STRLEN(?templateMotifCigarP60844MF_0114661) - STRLEN(REPLACE(?templateMotifCigarP60844MF_0114661, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionP6084462) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60844MF_0114663, 1, (STRLEN(?targetMotifMatchCigarP60844MF_0114663) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_0114663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60844MF_0114663, 1, (STRLEN(?targetMotifMatchCigarP60844MF_0114663) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_0114663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0114664) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60844MF_0114661, 1, (STRLEN(?templateMotifCigarP60844MF_0114661) - STRLEN(REPLACE(?templateMotifCigarP60844MF_0114661, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionP6084462) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60844MF_0114663, 1, (STRLEN(?targetMotifMatchCigarP60844MF_0114663) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_0114663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60844MF_0114663, 1, (STRLEN(?targetMotifMatchCigarP60844MF_0114663) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_0114663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0114664) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'NPA')) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionP6084483 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6084485 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60844MF_0114678 .
?templateMotifSequenceMatchRegionP6084483 faldo:begin ?templateMotifSequenceMatchBeginP6084484 .
?templateMotifSequenceMatchBeginP6084484 faldo:position ?templateMotifSequenceMatchBeginPositionP6084479 ;
faldo:reference isoform:P60844-1 .
?templateMotifSequenceProfileAlignmentOperationP6084485 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0114689 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60844MF_0114680 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0114688 .
?targetMotifMatchRegionMatchBeginMF_0114688 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0114681 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0114689 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60844MF_0114678, 1, (STRLEN(?templateMotifCigarP60844MF_0114678) - STRLEN(REPLACE(?templateMotifCigarP60844MF_0114678, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionP6084479) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60844MF_0114680, 1, (STRLEN(?targetMotifMatchCigarP60844MF_0114680) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_0114680, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60844MF_0114680, 1, (STRLEN(?targetMotifMatchCigarP60844MF_0114680) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_0114680, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0114681) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60844MF_0114678, 1, (STRLEN(?templateMotifCigarP60844MF_0114678) - STRLEN(REPLACE(?templateMotifCigarP60844MF_0114678, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP6084479) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60844MF_0114680, 1, (STRLEN(?targetMotifMatchCigarP60844MF_0114680) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_0114680, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60844MF_0114680, 1, (STRLEN(?targetMotifMatchCigarP60844MF_0114680) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_0114680, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0114681) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs2t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)) = 'NPA')) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP60844100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP60844102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60844MF_0114695 .
?templateMotifSequenceMatchRegionP60844100 faldo:begin ?templateMotifSequenceMatchBeginP60844101 .
?templateMotifSequenceMatchBeginP60844101 faldo:position ?templateMotifSequenceMatchBeginPositionP6084496 ;
faldo:reference isoform:P60844-1 .
?templateMotifSequenceProfileAlignmentOperationP60844102 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01146106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60844MF_0114697 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01146105 .
?targetMotifMatchRegionMatchBeginMF_01146105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0114698 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01146106 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60844MF_0114695, 1, (STRLEN(?templateMotifCigarP60844MF_0114695) - STRLEN(REPLACE(?templateMotifCigarP60844MF_0114695, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionP6084496) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60844MF_0114697, 1, (STRLEN(?targetMotifMatchCigarP60844MF_0114697) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_0114697, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60844MF_0114697, 1, (STRLEN(?targetMotifMatchCigarP60844MF_0114697) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_0114697, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0114698) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs3t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP60844115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP60844117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60844MF_01146110 .
?templateMotifSequenceMatchRegionP60844115 faldo:begin ?templateMotifSequenceMatchBeginP60844116 .
?templateMotifSequenceMatchBeginP60844116 faldo:position ?templateMotifSequenceMatchBeginPositionP60844111 ;
faldo:reference isoform:P60844-1 .
?templateMotifSequenceProfileAlignmentOperationP60844117 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01146121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60844MF_01146112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01146120 .
?targetMotifMatchRegionMatchBeginMF_01146120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01146113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01146121 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60844MF_01146110, 1, (STRLEN(?templateMotifCigarP60844MF_01146110) - STRLEN(REPLACE(?templateMotifCigarP60844MF_01146110, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP60844111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60844MF_01146112, 1, (STRLEN(?targetMotifMatchCigarP60844MF_01146112) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_01146112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60844MF_01146112, 1, (STRLEN(?targetMotifMatchCigarP60844MF_01146112) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_01146112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_01146113) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs3t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionP60844130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP60844132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60844MF_01146125 .
?templateMotifSequenceMatchRegionP60844130 faldo:begin ?templateMotifSequenceMatchBeginP60844131 .
?templateMotifSequenceMatchBeginP60844131 faldo:position ?templateMotifSequenceMatchBeginPositionP60844126 ;
faldo:reference isoform:P60844-1 .
?templateMotifSequenceProfileAlignmentOperationP60844132 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01146136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60844MF_01146127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01146135 .
?targetMotifMatchRegionMatchBeginMF_01146135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01146128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01146136 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60844MF_01146125, 1, (STRLEN(?templateMotifCigarP60844MF_01146125) - STRLEN(REPLACE(?templateMotifCigarP60844MF_01146125, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP60844126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60844MF_01146127, 1, (STRLEN(?targetMotifMatchCigarP60844MF_01146127) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_01146127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60844MF_01146127, 1, (STRLEN(?targetMotifMatchCigarP60844MF_01146127) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_01146127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_01146128) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs3t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP60844145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP60844147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60844MF_01146140 .
?templateMotifSequenceMatchRegionP60844145 faldo:begin ?templateMotifSequenceMatchBeginP60844146 .
?templateMotifSequenceMatchBeginP60844146 faldo:position ?templateMotifSequenceMatchBeginPositionP60844141 ;
faldo:reference isoform:P60844-1 .
?templateMotifSequenceProfileAlignmentOperationP60844147 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01146151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60844MF_01146142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01146150 .
?targetMotifMatchRegionMatchBeginMF_01146150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01146143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01146151 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60844MF_01146140, 1, (STRLEN(?templateMotifCigarP60844MF_01146140) - STRLEN(REPLACE(?templateMotifCigarP60844MF_01146140, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionP60844141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60844MF_01146142, 1, (STRLEN(?targetMotifMatchCigarP60844MF_01146142) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_01146142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60844MF_01146142, 1, (STRLEN(?targetMotifMatchCigarP60844MF_01146142) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_01146142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_01146143) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs3t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP60844160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP60844162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60844MF_01146155 .
?templateMotifSequenceMatchRegionP60844160 faldo:begin ?templateMotifSequenceMatchBeginP60844161 .
?templateMotifSequenceMatchBeginP60844161 faldo:position ?templateMotifSequenceMatchBeginPositionP60844156 ;
faldo:reference isoform:P60844-1 .
?templateMotifSequenceProfileAlignmentOperationP60844162 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01146166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60844MF_01146157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01146165 .
?targetMotifMatchRegionMatchBeginMF_01146165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01146158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01146166 edam:has_input signature:MF_01146 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60844MF_01146155, 1, (STRLEN(?templateMotifCigarP60844MF_01146155) - STRLEN(REPLACE(?templateMotifCigarP60844MF_01146155, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP60844156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60844MF_01146157, 1, (STRLEN(?targetMotifMatchCigarP60844MF_01146157) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_01146157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60844MF_01146157, 1, (STRLEN(?targetMotifMatchCigarP60844MF_01146157) - STRLEN(REPLACE(?targetMotifMatchCigarP60844MF_01146157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_01146158) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs3t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag170) .
}
BIND(IF((BOUND(?tagFT_1) || BOUND(?tagFT_2)), ?caseWithTag170, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p171 .
?p171 skos:narrower .
}
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p172 .
?p172 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p173 .
?p173 skos:narrower .
}
}
BIND(?this AS ?case9) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane174 ;
up:sequence ?thisSequence .
?samtransmembrane174 up:range ?samtransmembraner175 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner175 faldo:begin ?samtransmembraneb176 ;
faldo:end ?samtransmembranee177 .
?samtransmembraneb176 faldo:position ?samtransmembranebp178 ;
faldo:reference ?thisSequence .
?samtransmembranee177 faldo:position ?samtransmembraneep179 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam52) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01146a58')) AS ?keyword58) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a59')) AS ?keyword59) .
BIND(URI(CONCAT(STR(?this), '#MF_01146a60')) AS ?keyword60) .
}
"xsd:string |
