| http://purl.uniprot.org/unirules/MF_01172#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:410165 up:source unirule:MF_01172 .
_:410166 up:source unirule:MF_01172 .
_:410167 up:source unirule:MF_01172 .
_:410168 up:source unirule:MF_01172 .
_:410169 up:source unirule:MF_01172 .
_:410170 up:source unirule:MF_01172 .
_:410171 up:source unirule:MF_01172 .
_:410172 up:source unirule:MF_01172 .
_:410173 up:source unirule:MF_01172 .
_:410174 up:source unirule:MF_01172 .
_:410175 up:source unirule:MF_01172 .
_:410176 up:source unirule:MF_01172 .
_:410177 up:source unirule:MF_01172 .
_:410178 up:source unirule:MF_01172 .
_:410179 up:source unirule:MF_01172 .
_:410180 up:source unirule:MF_01172 .
_:410181 up:source unirule:MF_01172 .
_:410182 up:source unirule:MF_01172 .
_:410183 up:source unirule:MF_01172 .
_:410184 up:source unirule:MF_01172 .
_:410185 up:source unirule:MF_01172 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0009015 ,
GO:0019544 ,
GO:0019545 ,
keyword:378 ,
keyword:56 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.3.23' ;
up:fullName 'N-succinylarginine dihydrolase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'astB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)-succinylornithine, ammonia and CO(2).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-arginine degradation via AST pathway; L-glutamate and succinate from L-arginine: step 2/5.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the succinylarginine dihydrolase family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf ?molecule13 .
?molecule13 rdfs:label 'substrate' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf ?molecule21 .
?molecule21 rdfs:label 'substrate' .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf ?molecule47 .
?molecule47 rdfs:label 'substrate' .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf ?molecule55 .
?molecule55 rdfs:label 'substrate' .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf ?molecule63 .
?molecule63 rdfs:label 'substrate' .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf ?molecule71 .
?molecule71 rdfs:label 'substrate' .
_:410186 a rdf:Statement ;
up:attribution _:410165 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:410187 a rdf:Statement ;
up:attribution _:410166 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:410188 a rdf:Statement ;
up:attribution _:410167 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:410189 a rdf:Statement ;
up:attribution _:410168 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:410190 a rdf:Statement ;
up:attribution _:410169 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:410191 a rdf:Statement ;
up:attribution _:410170 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:410192 a rdf:Statement ;
up:attribution _:410171 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:410193 a rdf:Statement ;
up:attribution _:410172 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:56 .
_:410194 a rdf:Statement ;
up:attribution _:410173 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:410195 a rdf:Statement ;
up:attribution _:410174 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009015 .
_:410196 a rdf:Statement ;
up:attribution _:410175 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019544 .
_:410197 a rdf:Statement ;
up:attribution _:410176 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019545 .
_:410198 a rdf:Statement ;
up:source unirule:MF_01172 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:410199 a rdf:Statement ;
up:attribution _:410177 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:410200 a rdf:Statement ;
up:source unirule:MF_01172 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:410201 a rdf:Statement ;
up:attribution _:410178 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:410202 a rdf:Statement ;
up:source unirule:MF_01172 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:410203 a rdf:Statement ;
up:attribution _:410179 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:410204 a rdf:Statement ;
up:source unirule:MF_01172 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:410205 a rdf:Statement ;
up:attribution _:410180 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:410206 a rdf:Statement ;
up:source unirule:MF_01172 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:410207 a rdf:Statement ;
up:attribution _:410181 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:410208 a rdf:Statement ;
up:source unirule:MF_01172 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:410209 a rdf:Statement ;
up:attribution _:410182 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:410210 a rdf:Statement ;
up:source unirule:MF_01172 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:410211 a rdf:Statement ;
up:attribution _:410183 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:410212 a rdf:Statement ;
up:source unirule:MF_01172 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:410213 a rdf:Statement ;
up:attribution _:410184 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:410214 a rdf:Statement ;
up:source unirule:MF_01172 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:410215 a rdf:Statement ;
up:attribution _:410185 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01172
#Rule MF_01172 Created by:? on:2006-11-03 Modified by:Catherine Rivoire on:2025-09-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01172 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01172a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionP7621679 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7621681 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76216MF_0117274 .
?templateMotifSequenceMatchRegionP7621679 faldo:begin ?templateMotifSequenceMatchBeginP7621680 .
?templateMotifSequenceMatchBeginP7621680 faldo:position ?templateMotifSequenceMatchBeginPositionP7621675 ;
faldo:reference isoform:P76216-1 .
?templateMotifSequenceProfileAlignmentOperationP7621681 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0117285 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76216MF_0117276 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0117284 .
?targetMotifMatchRegionMatchBeginMF_0117284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117277 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0117285 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_0117274, 1, (STRLEN(?templateMotifCigarP76216MF_0117274) - STRLEN(REPLACE(?templateMotifCigarP76216MF_0117274, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP7621675) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_0117276, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117276) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_0117276, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117276) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0117277) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_0117274, 1, (STRLEN(?templateMotifCigarP76216MF_0117274) - STRLEN(REPLACE(?templateMotifCigarP76216MF_0117274, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP7621675) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_0117276, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117276) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_0117276, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117276) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0117277) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionP7621696 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7621698 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76216MF_0117291 .
?templateMotifSequenceMatchRegionP7621696 faldo:begin ?templateMotifSequenceMatchBeginP7621697 .
?templateMotifSequenceMatchBeginP7621697 faldo:position ?templateMotifSequenceMatchBeginPositionP7621692 ;
faldo:reference isoform:P76216-1 .
?templateMotifSequenceProfileAlignmentOperationP7621698 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76216MF_0117293 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172101 .
?targetMotifMatchRegionMatchBeginMF_01172101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117294 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01172102 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_0117291, 1, (STRLEN(?templateMotifCigarP76216MF_0117291) - STRLEN(REPLACE(?templateMotifCigarP76216MF_0117291, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP7621692) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_0117293, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117293) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_0117293, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117293) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0117294) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_0117291, 1, (STRLEN(?templateMotifCigarP76216MF_0117291) - STRLEN(REPLACE(?templateMotifCigarP76216MF_0117291, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP7621692) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_0117293, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117293) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_0117293, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117293) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0117294) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP76216113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76216MF_01172108 .
?templateMotifSequenceMatchRegionP76216113 faldo:begin ?templateMotifSequenceMatchBeginP76216114 .
?templateMotifSequenceMatchBeginP76216114 faldo:position ?templateMotifSequenceMatchBeginPositionP76216109 ;
faldo:reference isoform:P76216-1 .
?templateMotifSequenceProfileAlignmentOperationP76216115 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76216MF_01172110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172118 .
?targetMotifMatchRegionMatchBeginMF_01172118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01172119 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172108, 1, (STRLEN(?templateMotifCigarP76216MF_01172108) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172108, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP76216109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172110, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172110) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172110, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172110) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01172111) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP76216128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76216MF_01172123 .
?templateMotifSequenceMatchRegionP76216128 faldo:begin ?templateMotifSequenceMatchBeginP76216129 .
?templateMotifSequenceMatchBeginP76216129 faldo:position ?templateMotifSequenceMatchBeginPositionP76216124 ;
faldo:reference isoform:P76216-1 .
?templateMotifSequenceProfileAlignmentOperationP76216130 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76216MF_01172125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172133 .
?targetMotifMatchRegionMatchBeginMF_01172133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01172134 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172123, 1, (STRLEN(?templateMotifCigarP76216MF_01172123) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172123, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP76216124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172125, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172125) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172125, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172125) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_01172126) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP76216143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76216MF_01172138 .
?templateMotifSequenceMatchRegionP76216143 faldo:begin ?templateMotifSequenceMatchBeginP76216144 .
?templateMotifSequenceMatchBeginP76216144 faldo:position ?templateMotifSequenceMatchBeginPositionP76216139 ;
faldo:reference isoform:P76216-1 .
?templateMotifSequenceProfileAlignmentOperationP76216145 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76216MF_01172140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172148 .
?targetMotifMatchRegionMatchBeginMF_01172148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01172149 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172138, 1, (STRLEN(?templateMotifCigarP76216MF_01172138) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172138, CONCAT('^(?:-*[^-]){', STR(((365 - ?templateMotifSequenceMatchBeginPositionP76216139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172140, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172140) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172140, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172140) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01172141) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP76216158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76216MF_01172153 .
?templateMotifSequenceMatchRegionP76216158 faldo:begin ?templateMotifSequenceMatchBeginP76216159 .
?templateMotifSequenceMatchBeginP76216159 faldo:position ?templateMotifSequenceMatchBeginPositionP76216154 ;
faldo:reference isoform:P76216-1 .
?templateMotifSequenceProfileAlignmentOperationP76216160 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76216MF_01172155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172163 .
?targetMotifMatchRegionMatchBeginMF_01172163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01172164 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172153, 1, (STRLEN(?templateMotifCigarP76216MF_01172153) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172153, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionP76216154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172155, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172155) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172155, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172155) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01172156) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionP76216173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76216MF_01172168 .
?templateMotifSequenceMatchRegionP76216173 faldo:begin ?templateMotifSequenceMatchBeginP76216174 .
?templateMotifSequenceMatchBeginP76216174 faldo:position ?templateMotifSequenceMatchBeginPositionP76216169 ;
faldo:reference isoform:P76216-1 .
?templateMotifSequenceProfileAlignmentOperationP76216175 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76216MF_01172170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172178 .
?targetMotifMatchRegionMatchBeginMF_01172178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01172179 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172168, 1, (STRLEN(?templateMotifCigarP76216MF_01172168) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172168, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP76216169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172170, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172170) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172170, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172170) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01172171) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP76216188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76216MF_01172183 .
?templateMotifSequenceMatchRegionP76216188 faldo:begin ?templateMotifSequenceMatchBeginP76216189 .
?templateMotifSequenceMatchBeginP76216189 faldo:position ?templateMotifSequenceMatchBeginPositionP76216184 ;
faldo:reference isoform:P76216-1 .
?templateMotifSequenceProfileAlignmentOperationP76216190 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76216MF_01172185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172193 .
?targetMotifMatchRegionMatchBeginMF_01172193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01172194 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172183, 1, (STRLEN(?templateMotifCigarP76216MF_01172183) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172183, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP76216184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172185, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172185) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172185, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172185) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_01172186) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP76216203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76216MF_01172198 .
?templateMotifSequenceMatchRegionP76216203 faldo:begin ?templateMotifSequenceMatchBeginP76216204 .
?templateMotifSequenceMatchBeginP76216204 faldo:position ?templateMotifSequenceMatchBeginPositionP76216199 ;
faldo:reference isoform:P76216-1 .
?templateMotifSequenceProfileAlignmentOperationP76216205 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76216MF_01172200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172208 .
?targetMotifMatchRegionMatchBeginMF_01172208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01172209 edam:has_input signature:MF_01172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172198, 1, (STRLEN(?templateMotifCigarP76216MF_01172198) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172198, CONCAT('^(?:-*[^-]){', STR(((359 - ?templateMotifSequenceMatchBeginPositionP76216199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172200, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172200) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172200, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172200) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_01172201) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01172a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
}
"xsd:string |
