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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-138 |
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-115 |
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-139 |
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-116 |
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-117 |
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-118 |
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-119 |
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-76 |
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-77 |
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-78 |
| http://purl.uniprot.org/unirules/MF_01192#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01192#construct-template-79 |
| http://purl.uniprot.org/unirules/MF_01192#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01192#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01192#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01192#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01192#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01192#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:417339 up:source unirule:MF_01192 . _:417340 up:source unirule:MF_01192 . _:417341 up:source unirule:MF_01192 . _:417342 up:source unirule:MF_01192 . _:417343 up:source unirule:MF_01192 . _:417344 up:source unirule:MF_01192 . _:417345 up:source unirule:MF_01192 . _:417346 up:source unirule:MF_01192 . _:417347 up:source unirule:MF_01192 . _:417348 up:source unirule:MF_01192 . _:417349 up:source unirule:MF_01192 . _:417350 up:source unirule:MF_01192 . _:417351 up:source unirule:MF_01192 . _:417352 up:source unirule:MF_01192 . _:417353 up:source unirule:MF_01192 . _:417354 up:source unirule:MF_01192 . _:417355 up:source unirule:MF_01192 . _:417356 up:source unirule:MF_01192 . _:417357 up:source unirule:MF_01192 . _:417358 up:source unirule:MF_01192 . _:417359 up:source unirule:MF_01192 . _:417360 up:source unirule:MF_01192 . _:417361 up:source unirule:MF_01192 . _:417362 up:source unirule:MF_01192 . _:417363 up:source unirule:MF_01192 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0000287 , GO:0003677 , GO:0017108 , GO:0030955 , GO:0033567 , keyword:238 , keyword:255 , keyword:378 , keyword:460 , keyword:479 , keyword:540 , keyword:630 ; up:recommendedName ?name0 . ?name0 up:ecName '3.1.-.-' ; up:fullName 'Flap endonuclease Xni' ; up:shortName 'FEN' ; rdf:type up:Structured_Name . ?gene1 skos:altLabel 'ygdG' ; skos:prefLabel 'xni' . ?annotation2 a up:Function_Annotation ; rdfs:comment "Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment." . ?annotation3 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 Mg(2+) per subunit. Only one magnesium ion has a direct interaction with the protein, the other interactions are indirect.' . ?annotation4 up:cofactor chebi:29103 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 K(+) per subunit. The potassium ion strongly increases the affinity for DNA.' . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Xni family.' . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with DNA' . ?pfsb8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; up:ligand ?ligand16 ; rdf:type up:Binding_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand16 rdfs:subClassOf chebi:18420 . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:29103 . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:29103 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:29103 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:29103 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:29103 . _:417364 a rdf:Statement ; up:attribution _:417339 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:417365 a rdf:Statement ; up:attribution _:417340 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:417366 a rdf:Statement ; up:attribution _:417341 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:417367 a rdf:Statement ; up:attribution _:417342 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:417368 a rdf:Statement ; up:attribution _:417343 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:417369 a rdf:Statement ; up:attribution _:417344 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:417370 a rdf:Statement ; up:attribution _:417345 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:417371 a rdf:Statement ; up:attribution _:417346 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:255 . _:417372 a rdf:Statement ; up:attribution _:417347 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:417373 a rdf:Statement ; up:attribution _:417348 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:417374 a rdf:Statement ; up:attribution _:417349 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:417375 a rdf:Statement ; up:attribution _:417350 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:417376 a rdf:Statement ; up:attribution _:417351 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:630 . _:417377 a rdf:Statement ; up:attribution _:417352 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:417378 a rdf:Statement ; up:attribution _:417353 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003677 . _:417379 a rdf:Statement ; up:attribution _:417354 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0017108 . _:417380 a rdf:Statement ; up:attribution _:417355 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030955 . _:417381 a rdf:Statement ; up:attribution _:417356 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0033567 . _:417382 a rdf:Statement ; up:source unirule:MF_01192 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:417383 a rdf:Statement ; up:attribution _:417357 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:417384 a rdf:Statement ; up:source unirule:MF_01192 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:417385 a rdf:Statement ; up:attribution _:417358 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:417386 a rdf:Statement ; up:source unirule:MF_01192 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:417387 a rdf:Statement ; up:attribution _:417359 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:417388 a rdf:Statement ; up:source unirule:MF_01192 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:417389 a rdf:Statement ; up:attribution _:417360 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:417390 a rdf:Statement ; up:source unirule:MF_01192 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:417391 a rdf:Statement ; up:attribution _:417361 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:417392 a rdf:Statement ; up:source unirule:MF_01192 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:417393 a rdf:Statement ; up:attribution _:417362 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:417394 a rdf:Statement ; up:source unirule:MF_01192 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:417395 a rdf:Statement ; up:attribution _:417363 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01192 #Rule MF_01192 Created by:? on:2007-07-12 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01192 . ?thisOrganism rdfs:subClassOf+ taxon:1236 . BIND(URI(CONCAT(STR(?this), '#MF_01192a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01192a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01192a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01192a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01192a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionP3850659 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3850661 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP38506MF_0119254 . ?templateMotifSequenceMatchRegionP3850659 faldo:begin ?templateMotifSequenceMatchBeginP3850660 . ?templateMotifSequenceMatchBeginP3850660 faldo:position ?templateMotifSequenceMatchBeginPositionP3850655 ; faldo:reference isoform:P38506-1 . ?templateMotifSequenceProfileAlignmentOperationP3850661 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . ?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0119265 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP38506MF_0119256 . ?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0119264 . ?targetMotifMatchRegionMatchBeginMF_0119264 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0119257 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0119265 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38506MF_0119254, 1, (STRLEN(?templateMotifCigarP38506MF_0119254) - STRLEN(REPLACE(?templateMotifCigarP38506MF_0119254, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionP3850655) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38506MF_0119256, 1, (STRLEN(?targetMotifMatchCigarP38506MF_0119256) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_0119256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38506MF_0119256, 1, (STRLEN(?targetMotifMatchCigarP38506MF_0119256) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_0119256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) . BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0119257) - 1) AS ?thisPositionOn10) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38506MF_0119254, 1, (STRLEN(?templateMotifCigarP38506MF_0119254) - STRLEN(REPLACE(?templateMotifCigarP38506MF_0119254, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP3850655) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38506MF_0119256, 1, (STRLEN(?targetMotifMatchCigarP38506MF_0119256) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_0119256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38506MF_0119256, 1, (STRLEN(?targetMotifMatchCigarP38506MF_0119256) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_0119256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) . BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0119257) - 1) AS ?thisPositionOn11) . BIND(?this AS ?pfs1t70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) . FILTER ((BOUND(?thisPositionOn10) && BOUND(?thisPositionOn11))) . BIND(URI(CONCAT(STR(?this), '#MF_01192a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionP3850676 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3850678 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP38506MF_0119271 . ?templateMotifSequenceMatchRegionP3850676 faldo:begin ?templateMotifSequenceMatchBeginP3850677 . ?templateMotifSequenceMatchBeginP3850677 faldo:position ?templateMotifSequenceMatchBeginPositionP3850672 ; faldo:reference isoform:P38506-1 . ?templateMotifSequenceProfileAlignmentOperationP3850678 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . ?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0119282 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP38506MF_0119273 . ?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0119281 . ?targetMotifMatchRegionMatchBeginMF_0119281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0119274 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0119282 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38506MF_0119271, 1, (STRLEN(?templateMotifCigarP38506MF_0119271) - STRLEN(REPLACE(?templateMotifCigarP38506MF_0119271, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP3850672) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38506MF_0119273, 1, (STRLEN(?targetMotifMatchCigarP38506MF_0119273) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_0119273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38506MF_0119273, 1, (STRLEN(?targetMotifMatchCigarP38506MF_0119273) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_0119273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) . BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0119274) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t85) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01192a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP3850691 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3850693 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP38506MF_0119286 . ?templateMotifSequenceMatchRegionP3850691 faldo:begin ?templateMotifSequenceMatchBeginP3850692 . ?templateMotifSequenceMatchBeginP3850692 faldo:position ?templateMotifSequenceMatchBeginPositionP3850687 ; faldo:reference isoform:P38506-1 . ?templateMotifSequenceProfileAlignmentOperationP3850693 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . ?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0119297 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP38506MF_0119288 . ?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0119296 . ?targetMotifMatchRegionMatchBeginMF_0119296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0119289 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0119297 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38506MF_0119286, 1, (STRLEN(?templateMotifCigarP38506MF_0119286) - STRLEN(REPLACE(?templateMotifCigarP38506MF_0119286, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionP3850687) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38506MF_0119288, 1, (STRLEN(?targetMotifMatchCigarP38506MF_0119288) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_0119288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38506MF_0119288, 1, (STRLEN(?targetMotifMatchCigarP38506MF_0119288) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_0119288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) . BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0119289) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER (REGEX('[LIMF]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01192a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP38506106 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38506108 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP38506MF_01192101 . ?templateMotifSequenceMatchRegionP38506106 faldo:begin ?templateMotifSequenceMatchBeginP38506107 . ?templateMotifSequenceMatchBeginP38506107 faldo:position ?templateMotifSequenceMatchBeginPositionP38506102 ; faldo:reference isoform:P38506-1 . ?templateMotifSequenceProfileAlignmentOperationP38506108 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . ?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01192112 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP38506MF_01192103 . ?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01192111 . ?targetMotifMatchRegionMatchBeginMF_01192111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01192104 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01192112 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38506MF_01192101, 1, (STRLEN(?templateMotifCigarP38506MF_01192101) - STRLEN(REPLACE(?templateMotifCigarP38506MF_01192101, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionP38506102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38506MF_01192103, 1, (STRLEN(?targetMotifMatchCigarP38506MF_01192103) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_01192103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38506MF_01192103, 1, (STRLEN(?targetMotifMatchCigarP38506MF_01192103) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_01192103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01192104) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t115) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'A')) . BIND(URI(CONCAT(STR(?this), '#MF_01192a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP38506121 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38506123 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP38506MF_01192116 . ?templateMotifSequenceMatchRegionP38506121 faldo:begin ?templateMotifSequenceMatchBeginP38506122 . ?templateMotifSequenceMatchBeginP38506122 faldo:position ?templateMotifSequenceMatchBeginPositionP38506117 ; faldo:reference isoform:P38506-1 . ?templateMotifSequenceProfileAlignmentOperationP38506123 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . ?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01192127 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP38506MF_01192118 . ?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01192126 . ?targetMotifMatchRegionMatchBeginMF_01192126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01192119 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01192127 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38506MF_01192116, 1, (STRLEN(?templateMotifCigarP38506MF_01192116) - STRLEN(REPLACE(?templateMotifCigarP38506MF_01192116, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP38506117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38506MF_01192118, 1, (STRLEN(?targetMotifMatchCigarP38506MF_01192118) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_01192118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38506MF_01192118, 1, (STRLEN(?targetMotifMatchCigarP38506MF_01192118) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_01192118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) . BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01192119) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t130) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'P')) . BIND(URI(CONCAT(STR(?this), '#MF_01192a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP38506136 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38506138 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP38506MF_01192131 . ?templateMotifSequenceMatchRegionP38506136 faldo:begin ?templateMotifSequenceMatchBeginP38506137 . ?templateMotifSequenceMatchBeginP38506137 faldo:position ?templateMotifSequenceMatchBeginPositionP38506132 ; faldo:reference isoform:P38506-1 . ?templateMotifSequenceProfileAlignmentOperationP38506138 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . ?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01192142 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP38506MF_01192133 . ?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01192141 . ?targetMotifMatchRegionMatchBeginMF_01192141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01192134 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01192142 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38506MF_01192131, 1, (STRLEN(?templateMotifCigarP38506MF_01192131) - STRLEN(REPLACE(?templateMotifCigarP38506MF_01192131, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionP38506132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38506MF_01192133, 1, (STRLEN(?targetMotifMatchCigarP38506MF_01192133) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_01192133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38506MF_01192133, 1, (STRLEN(?targetMotifMatchCigarP38506MF_01192133) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_01192133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) . BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01192134) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t145) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER (REGEX('[VI]', SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01192a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP38506151 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38506153 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP38506MF_01192146 . ?templateMotifSequenceMatchRegionP38506151 faldo:begin ?templateMotifSequenceMatchBeginP38506152 . ?templateMotifSequenceMatchBeginP38506152 faldo:position ?templateMotifSequenceMatchBeginPositionP38506147 ; faldo:reference isoform:P38506-1 . ?templateMotifSequenceProfileAlignmentOperationP38506153 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . ?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01192157 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP38506MF_01192148 . ?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01192156 . ?targetMotifMatchRegionMatchBeginMF_01192156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01192149 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01192157 edam:has_input signature:MF_01192 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38506MF_01192146, 1, (STRLEN(?templateMotifCigarP38506MF_01192146) - STRLEN(REPLACE(?templateMotifCigarP38506MF_01192146, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP38506147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38506MF_01192148, 1, (STRLEN(?targetMotifMatchCigarP38506MF_01192148) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_01192148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38506MF_01192148, 1, (STRLEN(?targetMotifMatchCigarP38506MF_01192148) - STRLEN(REPLACE(?targetMotifMatchCigarP38506MF_01192148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) . BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_01192149) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t160) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01192a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_01192 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01192#construct |