| http://purl.uniprot.org/unirules/MF_01206#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:421975 up:source unirule:MF_01206 .
_:421976 up:source unirule:MF_01206 .
_:421977 up:source unirule:MF_01206 .
_:421978 up:source unirule:MF_01206 .
_:421979 up:source unirule:MF_01206 .
_:421980 up:source unirule:MF_01206 .
_:421981 up:source unirule:MF_01206 .
_:421982 up:source unirule:MF_01206 .
_:421983 up:source unirule:MF_01206 .
_:421984 up:source unirule:MF_01206 .
_:421985 up:source unirule:MF_01206 .
_:421986 up:source unirule:MF_01206 .
_:421987 up:source unirule:MF_01206 .
_:421988 up:source unirule:MF_01206 .
_:421989 up:source unirule:MF_01206 .
_:421990 up:source unirule:MF_01206 .
_:421991 up:source unirule:MF_01206 .
_:421992 up:source unirule:MF_01206 .
_:421993 up:source unirule:MF_01206 .
_:421994 up:source unirule:MF_01206 .
_:421995 up:source unirule:MF_01206 .
_:421996 up:source unirule:MF_01206 .
_:421997 up:source unirule:MF_01206 .
_:421998 up:source unirule:MF_01206 .
_:421999 up:source unirule:MF_01206 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0016672 ,
GO:0030091 ,
GO:0043546 ,
keyword:479 ,
keyword:500 ,
keyword:560 ,
keyword:732 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:ecName '1.8.5.-' ;
up:fullName 'Protein-methionine-sulfoxide reductase catalytic subunit MsrP' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'msrP' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity .
?annotation6 up:cofactor chebi:71302 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mo-molybdopterin (Mo-MPT) cofactor per subunit.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Heterodimer of a catalytic subunit (MsrP) and a heme-binding subunit (MsrQ).' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MsrP family.' .
?case10 up:classifiedWith GO:0042597 ,
keyword:574 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:71302 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:71302 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 up:ligandPart ?ligand33 ;
rdfs:subClassOf chebi:28685 ,
chebi:71302 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:71302 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:71302 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:71302 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:71302 .
?sam64 up:classifiedWith keyword:732 .
?signal65 faldo:begin ?signalb66 ;
faldo:end ?signale67 .
?signalb66 faldo:position ?signalbp68 .
?signale67 faldo:position ?signalep69 .
?keyword70 up:range ?signal65 .
_:422000 a rdf:Statement ;
up:attribution _:421975 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:422001 a rdf:Statement ;
up:attribution _:421976 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:422002 a rdf:Statement ;
up:attribution _:421977 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:422003 a rdf:Statement ;
up:attribution _:421978 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:422004 a rdf:Statement ;
up:attribution _:421979 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:422005 a rdf:Statement ;
up:attribution _:421980 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:422006 a rdf:Statement ;
up:attribution _:421981 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:422007 a rdf:Statement ;
up:attribution _:421982 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:422008 a rdf:Statement ;
up:attribution _:421983 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:422009 a rdf:Statement ;
up:attribution _:421984 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:500 .
_:422010 a rdf:Statement ;
up:attribution _:421985 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:422011 a rdf:Statement ;
up:attribution _:421986 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:422012 a rdf:Statement ;
up:attribution _:421987 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016672 .
_:422013 a rdf:Statement ;
up:attribution _:421988 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043546 .
_:422014 a rdf:Statement ;
up:attribution _:421989 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030091 .
_:422015 a rdf:Statement ;
up:attribution _:421990 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:574 .
_:422016 a rdf:Statement ;
up:attribution _:421991 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042597 .
_:422017 a rdf:Statement ;
up:source unirule:MF_01206 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:422018 a rdf:Statement ;
up:attribution _:421992 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:422019 a rdf:Statement ;
up:source unirule:MF_01206 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:422020 a rdf:Statement ;
up:attribution _:421993 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:422021 a rdf:Statement ;
up:source unirule:MF_01206 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:422022 a rdf:Statement ;
up:attribution _:421994 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:422023 a rdf:Statement ;
up:source unirule:MF_01206 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:422024 a rdf:Statement ;
up:attribution _:421995 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:422025 a rdf:Statement ;
up:source unirule:MF_01206 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:422026 a rdf:Statement ;
up:attribution _:421996 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:422027 a rdf:Statement ;
up:source unirule:MF_01206 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:422028 a rdf:Statement ;
up:attribution _:421997 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:422029 a rdf:Statement ;
up:source unirule:MF_01206 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:422030 a rdf:Statement ;
up:attribution _:421998 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:422031 a rdf:Statement ;
up:attribution _:421999 ;
rdf:subject ?sam64 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01206
#Rule MF_01206 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01206 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01206a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionP7634276 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7634278 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76342MF_0120671 .
?templateMotifSequenceMatchRegionP7634276 faldo:begin ?templateMotifSequenceMatchBeginP7634277 .
?templateMotifSequenceMatchBeginP7634277 faldo:position ?templateMotifSequenceMatchBeginPositionP7634272 ;
faldo:reference isoform:P76342-1 .
?templateMotifSequenceProfileAlignmentOperationP7634278 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0120682 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76342MF_0120673 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0120681 .
?targetMotifMatchRegionMatchBeginMF_0120681 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0120674 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0120682 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76342MF_0120671, 1, (STRLEN(?templateMotifCigarP76342MF_0120671) - STRLEN(REPLACE(?templateMotifCigarP76342MF_0120671, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP7634272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76342MF_0120673, 1, (STRLEN(?targetMotifMatchCigarP76342MF_0120673) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_0120673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76342MF_0120673, 1, (STRLEN(?targetMotifMatchCigarP76342MF_0120673) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_0120673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0120674) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76342MF_0120671, 1, (STRLEN(?templateMotifCigarP76342MF_0120671) - STRLEN(REPLACE(?templateMotifCigarP76342MF_0120671, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP7634272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76342MF_0120673, 1, (STRLEN(?targetMotifMatchCigarP76342MF_0120673) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_0120673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76342MF_0120673, 1, (STRLEN(?targetMotifMatchCigarP76342MF_0120673) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_0120673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0120674) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)) = 'YE')) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP7634293 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7634295 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76342MF_0120688 .
?templateMotifSequenceMatchRegionP7634293 faldo:begin ?templateMotifSequenceMatchBeginP7634294 .
?templateMotifSequenceMatchBeginP7634294 faldo:position ?templateMotifSequenceMatchBeginPositionP7634289 ;
faldo:reference isoform:P76342-1 .
?templateMotifSequenceProfileAlignmentOperationP7634295 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0120699 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76342MF_0120690 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0120698 .
?targetMotifMatchRegionMatchBeginMF_0120698 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0120691 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0120699 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76342MF_0120688, 1, (STRLEN(?templateMotifCigarP76342MF_0120688) - STRLEN(REPLACE(?templateMotifCigarP76342MF_0120688, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP7634289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76342MF_0120690, 1, (STRLEN(?targetMotifMatchCigarP76342MF_0120690) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_0120690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76342MF_0120690, 1, (STRLEN(?targetMotifMatchCigarP76342MF_0120690) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_0120690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0120691) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76342MF_0120688, 1, (STRLEN(?templateMotifCigarP76342MF_0120688) - STRLEN(REPLACE(?templateMotifCigarP76342MF_0120688, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP7634289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76342MF_0120690, 1, (STRLEN(?targetMotifMatchCigarP76342MF_0120690) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_0120690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76342MF_0120690, 1, (STRLEN(?targetMotifMatchCigarP76342MF_0120690) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_0120690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0120691) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]K', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP76342110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76342112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76342MF_01206105 .
?templateMotifSequenceMatchRegionP76342110 faldo:begin ?templateMotifSequenceMatchBeginP76342111 .
?templateMotifSequenceMatchBeginP76342111 faldo:position ?templateMotifSequenceMatchBeginPositionP76342106 ;
faldo:reference isoform:P76342-1 .
?templateMotifSequenceProfileAlignmentOperationP76342112 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01206116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76342MF_01206107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01206115 .
?targetMotifMatchRegionMatchBeginMF_01206115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01206108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01206116 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76342MF_01206105, 1, (STRLEN(?templateMotifCigarP76342MF_01206105) - STRLEN(REPLACE(?templateMotifCigarP76342MF_01206105, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionP76342106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76342MF_01206107, 1, (STRLEN(?targetMotifMatchCigarP76342MF_01206107) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_01206107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76342MF_01206107, 1, (STRLEN(?targetMotifMatchCigarP76342MF_01206107) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_01206107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01206108) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP76342125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76342127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76342MF_01206120 .
?templateMotifSequenceMatchRegionP76342125 faldo:begin ?templateMotifSequenceMatchBeginP76342126 .
?templateMotifSequenceMatchBeginP76342126 faldo:position ?templateMotifSequenceMatchBeginPositionP76342121 ;
faldo:reference isoform:P76342-1 .
?templateMotifSequenceProfileAlignmentOperationP76342127 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01206131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76342MF_01206122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01206130 .
?targetMotifMatchRegionMatchBeginMF_01206130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01206123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01206131 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76342MF_01206120, 1, (STRLEN(?templateMotifCigarP76342MF_01206120) - STRLEN(REPLACE(?templateMotifCigarP76342MF_01206120, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP76342121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76342MF_01206122, 1, (STRLEN(?targetMotifMatchCigarP76342MF_01206122) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_01206122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76342MF_01206122, 1, (STRLEN(?targetMotifMatchCigarP76342MF_01206122) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_01206122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01206123) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP76342140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76342142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76342MF_01206135 .
?templateMotifSequenceMatchRegionP76342140 faldo:begin ?templateMotifSequenceMatchBeginP76342141 .
?templateMotifSequenceMatchBeginP76342141 faldo:position ?templateMotifSequenceMatchBeginPositionP76342136 ;
faldo:reference isoform:P76342-1 .
?templateMotifSequenceProfileAlignmentOperationP76342142 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01206146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76342MF_01206137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01206145 .
?targetMotifMatchRegionMatchBeginMF_01206145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01206138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01206146 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76342MF_01206135, 1, (STRLEN(?templateMotifCigarP76342MF_01206135) - STRLEN(REPLACE(?templateMotifCigarP76342MF_01206135, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP76342136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76342MF_01206137, 1, (STRLEN(?targetMotifMatchCigarP76342MF_01206137) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_01206137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76342MF_01206137, 1, (STRLEN(?targetMotifMatchCigarP76342MF_01206137) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_01206137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01206138) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP76342155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76342157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76342MF_01206150 .
?templateMotifSequenceMatchRegionP76342155 faldo:begin ?templateMotifSequenceMatchBeginP76342156 .
?templateMotifSequenceMatchBeginP76342156 faldo:position ?templateMotifSequenceMatchBeginPositionP76342151 ;
faldo:reference isoform:P76342-1 .
?templateMotifSequenceProfileAlignmentOperationP76342157 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01206161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76342MF_01206152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01206160 .
?targetMotifMatchRegionMatchBeginMF_01206160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01206153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01206161 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76342MF_01206150, 1, (STRLEN(?templateMotifCigarP76342MF_01206150) - STRLEN(REPLACE(?templateMotifCigarP76342MF_01206150, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP76342151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76342MF_01206152, 1, (STRLEN(?targetMotifMatchCigarP76342MF_01206152) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_01206152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76342MF_01206152, 1, (STRLEN(?targetMotifMatchCigarP76342MF_01206152) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_01206152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01206153) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP76342170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76342172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76342MF_01206165 .
?templateMotifSequenceMatchRegionP76342170 faldo:begin ?templateMotifSequenceMatchBeginP76342171 .
?templateMotifSequenceMatchBeginP76342171 faldo:position ?templateMotifSequenceMatchBeginPositionP76342166 ;
faldo:reference isoform:P76342-1 .
?templateMotifSequenceProfileAlignmentOperationP76342172 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01206176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76342MF_01206167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01206175 .
?targetMotifMatchRegionMatchBeginMF_01206175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01206168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01206176 edam:has_input signature:MF_01206 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76342MF_01206165, 1, (STRLEN(?templateMotifCigarP76342MF_01206165) - STRLEN(REPLACE(?templateMotifCigarP76342MF_01206165, CONCAT('^(?:-*[^-]){', STR(((238 - ?templateMotifSequenceMatchBeginPositionP76342166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76342MF_01206167, 1, (STRLEN(?targetMotifMatchCigarP76342MF_01206167) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_01206167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76342MF_01206167, 1, (STRLEN(?targetMotifMatchCigarP76342MF_01206167) - STRLEN(REPLACE(?targetMotifMatchCigarP76342MF_01206167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01206168) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01206a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1224 .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p180 .
?p180 skos:narrower .
}
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso .
{
?this up:proteome .
} UNION {
?this up:proteome ?p181 .
?p181 skos:narrower .
}
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso .
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p182 .
?p182 skos:narrower .
}
})) .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon183 {taxon:561 taxon:620 taxon:590}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon183 .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
FILTER (! (EXISTS {
VALUES ?supertaxon184 {taxon:561 taxon:620 taxon:590}
?thisOrganism rdfs:subClassOf+ ?supertaxon184 .
})) .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this up:annotation ?samsignal185 ;
up:sequence ?thisSequence .
?samsignal185 up:range ?samsignalr186 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr186 faldo:begin ?samsignalb187 ;
faldo:end ?samsignale188 .
?samsignalb187 faldo:position ?samsignalbp189 ;
faldo:reference ?thisSequence .
?samsignale188 faldo:position ?samsignalep190 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam64) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01206a70')) AS ?keyword70) .
}
"xsd:string |
