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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-156 |
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-83 |
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-135 |
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-150 |
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-111 |
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-130 |
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-154 |
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-81 |
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-157 |
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-132 |
| http://purl.uniprot.org/unirules/MF_01211#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01211#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_01211#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01211#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01211#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01211#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01211#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01211#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:427051 up:source unirule:MF_01211 . _:427052 up:source unirule:MF_01211 . _:427053 up:source unirule:MF_01211 . _:427054 up:source unirule:MF_01211 . _:427055 up:source unirule:MF_01211 . _:427056 up:source unirule:MF_01211 . _:427057 up:source unirule:MF_01211 . _:427058 up:source unirule:MF_01211 . _:427059 up:source unirule:MF_01211 . _:427060 up:source unirule:MF_01211 . _:427061 up:source unirule:MF_01211 . _:427062 up:source unirule:MF_01211 . _:427063 up:source unirule:MF_01211 . _:427064 up:source unirule:MF_01211 . _:427065 up:source unirule:MF_01211 . _:427066 up:source unirule:MF_01211 . _:427067 up:source unirule:MF_01211 . _:427068 up:source unirule:MF_01211 . _:427069 up:source unirule:MF_01211 . _:427070 up:source unirule:MF_01211 . _:427071 up:source unirule:MF_01211 . _:427072 up:source unirule:MF_01211 . _:427073 up:source unirule:MF_01211 . _:427074 up:source unirule:MF_01211 . _:427075 up:source unirule:MF_01211 . ?this up:annotation ?annotation1 , ?annotation2 , ?annotation3 , ?annotation4 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0009055 , GO:0044205 , keyword:1 , keyword:249 , keyword:274 , keyword:285 , keyword:408 , keyword:411 , keyword:479 , keyword:665 , keyword:813 . ?gene0 skos:prefLabel 'pyrK' . ?annotation1 a up:Function_Annotation ; rdfs:comment 'Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).' . ?annotation2 up:cofactor chebi:190135 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 [2Fe-2S] cluster per subunit.' . ?annotation3 up:cofactor chebi:57692 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 FAD per subunit.' . ?annotation4 a up:Pathway_Annotation ; rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; orotate from (S)-dihydroorotate (NAD(+) route): step 1/1.' . ?annotation5 a up:Subunit_Annotation ; rdfs:comment 'Heterotetramer of 2 PyrK and 2 PyrD type B subunits.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the PyrK family.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:190135 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:190135 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:190135 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:190135 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:57692 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:57692 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:57692 . _:427076 a rdf:Statement ; up:attribution _:427051 ; rdf:subject ?gene0 ; rdf:predicate up:encodedBy ; rdf:object ?gene0 . _:427077 a rdf:Statement ; up:attribution _:427052 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:427078 a rdf:Statement ; up:attribution _:427053 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:427079 a rdf:Statement ; up:attribution _:427054 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:427080 a rdf:Statement ; up:attribution _:427055 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:427081 a rdf:Statement ; up:attribution _:427056 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:427082 a rdf:Statement ; up:attribution _:427057 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:427083 a rdf:Statement ; up:attribution _:427058 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:665 . _:427084 a rdf:Statement ; up:attribution _:427059 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:427085 a rdf:Statement ; up:attribution _:427060 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:249 . _:427086 a rdf:Statement ; up:attribution _:427061 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:427087 a rdf:Statement ; up:attribution _:427062 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:427088 a rdf:Statement ; up:attribution _:427063 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:427089 a rdf:Statement ; up:attribution _:427064 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1 . _:427090 a rdf:Statement ; up:attribution _:427065 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:285 . _:427091 a rdf:Statement ; up:attribution _:427066 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:274 . _:427092 a rdf:Statement ; up:attribution _:427067 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009055 . _:427093 a rdf:Statement ; up:attribution _:427068 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0044205 . _:427094 a rdf:Statement ; up:source unirule:MF_01211 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:427095 a rdf:Statement ; up:attribution _:427069 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:427096 a rdf:Statement ; up:source unirule:MF_01211 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:427097 a rdf:Statement ; up:attribution _:427070 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:427098 a rdf:Statement ; up:source unirule:MF_01211 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:427099 a rdf:Statement ; up:attribution _:427071 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:427100 a rdf:Statement ; up:source unirule:MF_01211 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:427101 a rdf:Statement ; up:attribution _:427072 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:427102 a rdf:Statement ; up:source unirule:MF_01211 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:427103 a rdf:Statement ; up:attribution _:427073 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:427104 a rdf:Statement ; up:source unirule:MF_01211 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:427105 a rdf:Statement ; up:attribution _:427074 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:427106 a rdf:Statement ; up:source unirule:MF_01211 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:427107 a rdf:Statement ; up:attribution _:427075 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01211 #Rule MF_01211 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-05-14 VALUES ?supertaxon58 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01211 . ?thisOrganism rdfs:subClassOf+ ?supertaxon58 . BIND(URI(CONCAT(STR(?this), '#MF_01211a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_01211a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01211a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01211a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01211a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01211a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionP5696864 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5696866 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56968MF_0121159 . ?templateMotifSequenceMatchRegionP5696864 faldo:begin ?templateMotifSequenceMatchBeginP5696865 . ?templateMotifSequenceMatchBeginP5696865 faldo:position ?templateMotifSequenceMatchBeginPositionP5696860 ; faldo:reference isoform:P56968-1 . ?templateMotifSequenceProfileAlignmentOperationP5696866 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . ?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0121170 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56968MF_0121161 . ?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0121169 . ?targetMotifMatchRegionMatchBeginMF_0121169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0121162 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0121170 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56968MF_0121159, 1, (STRLEN(?templateMotifCigarP56968MF_0121159) - STRLEN(REPLACE(?templateMotifCigarP56968MF_0121159, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionP5696860) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56968MF_0121161, 1, (STRLEN(?targetMotifMatchCigarP56968MF_0121161) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_0121161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56968MF_0121161, 1, (STRLEN(?targetMotifMatchCigarP56968MF_0121161) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_0121161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) . BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0121162) - 1) AS ?thisPositionOn14) . BIND(?thisPositionOn14 AS ?thisPositionOn15) . BIND(?this AS ?pfs1t73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01211a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionP5696879 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5696881 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56968MF_0121174 . ?templateMotifSequenceMatchRegionP5696879 faldo:begin ?templateMotifSequenceMatchBeginP5696880 . ?templateMotifSequenceMatchBeginP5696880 faldo:position ?templateMotifSequenceMatchBeginPositionP5696875 ; faldo:reference isoform:P56968-1 . ?templateMotifSequenceProfileAlignmentOperationP5696881 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . ?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0121185 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56968MF_0121176 . ?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0121184 . ?targetMotifMatchRegionMatchBeginMF_0121184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0121177 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0121185 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56968MF_0121174, 1, (STRLEN(?templateMotifCigarP56968MF_0121174) - STRLEN(REPLACE(?templateMotifCigarP56968MF_0121174, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP5696875) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56968MF_0121176, 1, (STRLEN(?targetMotifMatchCigarP56968MF_0121176) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_0121176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56968MF_0121176, 1, (STRLEN(?targetMotifMatchCigarP56968MF_0121176) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_0121176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) . BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0121177) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01211a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionP5696894 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5696896 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56968MF_0121189 . ?templateMotifSequenceMatchRegionP5696894 faldo:begin ?templateMotifSequenceMatchBeginP5696895 . ?templateMotifSequenceMatchBeginP5696895 faldo:position ?templateMotifSequenceMatchBeginPositionP5696890 ; faldo:reference isoform:P56968-1 . ?templateMotifSequenceProfileAlignmentOperationP5696896 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . ?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01211100 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56968MF_0121191 . ?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0121199 . ?targetMotifMatchRegionMatchBeginMF_0121199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0121192 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01211100 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56968MF_0121189, 1, (STRLEN(?templateMotifCigarP56968MF_0121189) - STRLEN(REPLACE(?templateMotifCigarP56968MF_0121189, CONCAT('^(?:-*[^-]){', STR(((234 - ?templateMotifSequenceMatchBeginPositionP5696890) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56968MF_0121191, 1, (STRLEN(?targetMotifMatchCigarP56968MF_0121191) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_0121191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56968MF_0121191, 1, (STRLEN(?targetMotifMatchCigarP56968MF_0121191) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_0121191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) . BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0121192) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01211a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionP56968109 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56968111 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56968MF_01211104 . ?templateMotifSequenceMatchRegionP56968109 faldo:begin ?templateMotifSequenceMatchBeginP56968110 . ?templateMotifSequenceMatchBeginP56968110 faldo:position ?templateMotifSequenceMatchBeginPositionP56968105 ; faldo:reference isoform:P56968-1 . ?templateMotifSequenceProfileAlignmentOperationP56968111 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . ?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01211115 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56968MF_01211106 . ?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01211114 . ?targetMotifMatchRegionMatchBeginMF_01211114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01211107 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01211115 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56968MF_01211104, 1, (STRLEN(?templateMotifCigarP56968MF_01211104) - STRLEN(REPLACE(?templateMotifCigarP56968MF_01211104, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP56968105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56968MF_01211106, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211106) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56968MF_01211106, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211106) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01211107) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01211a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionP56968124 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56968126 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56968MF_01211119 . ?templateMotifSequenceMatchRegionP56968124 faldo:begin ?templateMotifSequenceMatchBeginP56968125 . ?templateMotifSequenceMatchBeginP56968125 faldo:position ?templateMotifSequenceMatchBeginPositionP56968120 ; faldo:reference isoform:P56968-1 . ?templateMotifSequenceProfileAlignmentOperationP56968126 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . ?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01211130 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56968MF_01211121 . ?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01211129 . ?targetMotifMatchRegionMatchBeginMF_01211129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01211122 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01211130 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56968MF_01211119, 1, (STRLEN(?templateMotifCigarP56968MF_01211119) - STRLEN(REPLACE(?templateMotifCigarP56968MF_01211119, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP56968120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56968MF_01211121, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211121) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56968MF_01211121, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211121) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01211122) - 1) AS ?thisPositionOn42) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56968MF_01211119, 1, (STRLEN(?templateMotifCigarP56968MF_01211119) - STRLEN(REPLACE(?templateMotifCigarP56968MF_01211119, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionP56968120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56968MF_01211121, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211121) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56968MF_01211121, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211121) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) . BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_01211122) - 1) AS ?thisPositionOn43) . BIND(?this AS ?pfs2t135) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER (REGEX('RP[ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn42, (?thisPositionOn43 - ?thisPositionOn42)))) . BIND(URI(CONCAT(STR(?this), '#MF_01211a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionP56968141 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56968143 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56968MF_01211136 . ?templateMotifSequenceMatchRegionP56968141 faldo:begin ?templateMotifSequenceMatchBeginP56968142 . ?templateMotifSequenceMatchBeginP56968142 faldo:position ?templateMotifSequenceMatchBeginPositionP56968137 ; faldo:reference isoform:P56968-1 . ?templateMotifSequenceProfileAlignmentOperationP56968143 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . ?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01211147 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56968MF_01211138 . ?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01211146 . ?targetMotifMatchRegionMatchBeginMF_01211146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01211139 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01211147 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56968MF_01211136, 1, (STRLEN(?templateMotifCigarP56968MF_01211136) - STRLEN(REPLACE(?templateMotifCigarP56968MF_01211136, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP56968137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56968MF_01211138, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211138) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56968MF_01211138, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211138) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) . BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_01211139) - 1) AS ?thisPositionOn49) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56968MF_01211136, 1, (STRLEN(?templateMotifCigarP56968MF_01211136) - STRLEN(REPLACE(?templateMotifCigarP56968MF_01211136, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP56968137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56968MF_01211138, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211138) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56968MF_01211138, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211138) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) . BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01211139) - 1) AS ?thisPositionOn50) . BIND(?this AS ?pfs2t152) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER (REGEX('[LIV][ARNDCQEGHILKMFPSTWYVBZJUOX][RQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, (?thisPositionOn50 - ?thisPositionOn49)))) . BIND(URI(CONCAT(STR(?this), '#MF_01211a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP56968158 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56968160 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56968MF_01211153 . ?templateMotifSequenceMatchRegionP56968158 faldo:begin ?templateMotifSequenceMatchBeginP56968159 . ?templateMotifSequenceMatchBeginP56968159 faldo:position ?templateMotifSequenceMatchBeginPositionP56968154 ; faldo:reference isoform:P56968-1 . ?templateMotifSequenceProfileAlignmentOperationP56968160 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . ?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01211164 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56968MF_01211155 . ?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01211163 . ?targetMotifMatchRegionMatchBeginMF_01211163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01211156 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01211164 edam:has_input signature:MF_01211 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56968MF_01211153, 1, (STRLEN(?templateMotifCigarP56968MF_01211153) - STRLEN(REPLACE(?templateMotifCigarP56968MF_01211153, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionP56968154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56968MF_01211155, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211155) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56968MF_01211155, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211155) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) . BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01211156) - 1) AS ?thisPositionOn56) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56968MF_01211153, 1, (STRLEN(?templateMotifCigarP56968MF_01211153) - STRLEN(REPLACE(?templateMotifCigarP56968MF_01211153, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP56968154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56968MF_01211155, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211155) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56968MF_01211155, 1, (STRLEN(?targetMotifMatchCigarP56968MF_01211155) - STRLEN(REPLACE(?targetMotifMatchCigarP56968MF_01211155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) . BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_01211156) - 1) AS ?thisPositionOn57) . BIND(?this AS ?pfs2t169) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, (?thisPositionOn57 - ?thisPositionOn56)) = 'GT')) . BIND(URI(CONCAT(STR(?this), '#MF_01211a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case8) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_01211 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01211#construct |