| http://purl.uniprot.org/unirules/MF_01234#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:435350 up:source unirule:MF_01234 .
_:435351 up:source unirule:MF_01234 .
_:435352 up:source unirule:MF_01234 .
_:435353 up:source unirule:MF_01234 .
_:435354 up:source unirule:MF_01234 .
_:435355 up:source unirule:MF_01234 .
_:435356 up:source unirule:MF_01234 .
_:435357 up:source unirule:MF_01234 .
_:435358 up:source unirule:MF_01234 .
_:435359 up:source unirule:MF_01234 .
_:435360 up:source unirule:MF_01234 .
_:435361 up:source unirule:MF_01234 .
_:435362 up:source unirule:MF_01234 .
_:435363 up:source unirule:MF_01234 .
_:435364 up:source unirule:MF_01234 .
_:435365 up:source unirule:MF_01234 .
_:435366 up:source unirule:MF_01234 .
_:435367 up:source unirule:MF_01234 .
_:435368 up:source unirule:MF_01234 .
_:435369 up:source unirule:MF_01234 .
_:435370 up:source unirule:MF_01234 .
_:435371 up:source unirule:MF_01234 .
_:435372 up:source unirule:MF_01234 .
_:435373 up:source unirule:MF_01234 .
_:435374 up:source unirule:MF_01234 .
_:435375 up:source unirule:MF_01234 .
_:435376 up:source unirule:MF_01234 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0005524 ,
GO:0005975 ,
GO:0009384 ,
GO:0019262 ,
keyword:119 ,
keyword:418 ,
keyword:547 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.60' ;
up:fullName 'N-acetylmannosamine kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ManNAc kinase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'N-acetyl-D-mannosamine kinase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'nanK' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the phosphorylation of N-acetylmannosamine (ManNAc) to ManNAc-6-P.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amino-sugar metabolism; N-acetylneuraminate degradation; D-fructose 6-phosphate from N-acetylneuraminate: step 2/5.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ROK (NagC/XylR) family. NanK subfamily.' .
?case10 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29105 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:30616 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:30616 .
_:435377 a rdf:Statement ;
up:attribution _:435350 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:435378 a rdf:Statement ;
up:attribution _:435351 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:435379 a rdf:Statement ;
up:attribution _:435352 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:435380 a rdf:Statement ;
up:attribution _:435353 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:435381 a rdf:Statement ;
up:attribution _:435354 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:435382 a rdf:Statement ;
up:attribution _:435355 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:435383 a rdf:Statement ;
up:attribution _:435356 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:435384 a rdf:Statement ;
up:attribution _:435357 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:435385 a rdf:Statement ;
up:attribution _:435358 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:435386 a rdf:Statement ;
up:attribution _:435359 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:435387 a rdf:Statement ;
up:attribution _:435360 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:435388 a rdf:Statement ;
up:attribution _:435361 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:435389 a rdf:Statement ;
up:attribution _:435362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:435390 a rdf:Statement ;
up:attribution _:435363 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:435391 a rdf:Statement ;
up:attribution _:435364 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:435392 a rdf:Statement ;
up:attribution _:435365 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009384 .
_:435393 a rdf:Statement ;
up:attribution _:435366 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005975 .
_:435394 a rdf:Statement ;
up:attribution _:435367 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019262 .
_:435395 a rdf:Statement ;
up:attribution _:435368 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:435396 a rdf:Statement ;
up:attribution _:435369 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:435397 a rdf:Statement ;
up:attribution _:435370 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:435398 a rdf:Statement ;
up:source unirule:MF_01234 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:435399 a rdf:Statement ;
up:attribution _:435371 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:435400 a rdf:Statement ;
up:source unirule:MF_01234 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:435401 a rdf:Statement ;
up:attribution _:435372 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:435402 a rdf:Statement ;
up:source unirule:MF_01234 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:435403 a rdf:Statement ;
up:attribution _:435373 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:435404 a rdf:Statement ;
up:source unirule:MF_01234 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:435405 a rdf:Statement ;
up:attribution _:435374 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:435406 a rdf:Statement ;
up:source unirule:MF_01234 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:435407 a rdf:Statement ;
up:attribution _:435375 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:435408 a rdf:Statement ;
up:source unirule:MF_01234 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:435409 a rdf:Statement ;
up:attribution _:435376 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01234
#Rule MF_01234 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01234 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01234a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01234a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01234a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01234a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01234a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01234a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01234a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01234a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionP4542555 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4542557 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45425MF_0123450 .
?templateMotifSequenceMatchRegionP4542555 faldo:begin ?templateMotifSequenceMatchBeginP4542556 .
?templateMotifSequenceMatchBeginP4542556 faldo:position ?templateMotifSequenceMatchBeginPositionP4542551 ;
faldo:reference isoform:P45425-1 .
?templateMotifSequenceProfileAlignmentOperationP4542557 edam:has_input signature:MF_01234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0123461 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45425MF_0123452 .
?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0123460 .
?targetMotifMatchRegionMatchBeginMF_0123460 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0123453 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0123461 edam:has_input signature:MF_01234 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45425MF_0123450, 1, (STRLEN(?templateMotifCigarP45425MF_0123450) - STRLEN(REPLACE(?templateMotifCigarP45425MF_0123450, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP4542551) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45425MF_0123452, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123452) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45425MF_0123452, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123452) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0123453) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45425MF_0123450, 1, (STRLEN(?templateMotifCigarP45425MF_0123450) - STRLEN(REPLACE(?templateMotifCigarP45425MF_0123450, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP4542551) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45425MF_0123452, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123452) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45425MF_0123452, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123452) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0123453) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45425MF_0123450, 1, (STRLEN(?templateMotifCigarP45425MF_0123450) - STRLEN(REPLACE(?templateMotifCigarP45425MF_0123450, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionP4542551) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45425MF_0123452, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123452) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45425MF_0123452, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123452) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0123453) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45425MF_0123450, 1, (STRLEN(?templateMotifCigarP45425MF_0123450) - STRLEN(REPLACE(?templateMotifCigarP45425MF_0123450, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP4542551) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45425MF_0123452, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123452) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45425MF_0123452, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123452) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0123453) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'C')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionP4542579 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4542581 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45425MF_0123474 .
?templateMotifSequenceMatchRegionP4542579 faldo:begin ?templateMotifSequenceMatchBeginP4542580 .
?templateMotifSequenceMatchBeginP4542580 faldo:position ?templateMotifSequenceMatchBeginPositionP4542575 ;
faldo:reference isoform:P45425-1 .
?templateMotifSequenceProfileAlignmentOperationP4542581 edam:has_input signature:MF_01234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0123485 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45425MF_0123476 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0123484 .
?targetMotifMatchRegionMatchBeginMF_0123484 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0123477 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0123485 edam:has_input signature:MF_01234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45425MF_0123474, 1, (STRLEN(?templateMotifCigarP45425MF_0123474) - STRLEN(REPLACE(?templateMotifCigarP45425MF_0123474, CONCAT('^(?:-*[^-]){', STR(((5 - ?templateMotifSequenceMatchBeginPositionP4542575) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45425MF_0123476, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123476) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45425MF_0123476, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123476) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0123477) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45425MF_0123474, 1, (STRLEN(?templateMotifCigarP45425MF_0123474) - STRLEN(REPLACE(?templateMotifCigarP45425MF_0123474, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP4542575) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45425MF_0123476, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123476) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45425MF_0123476, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123476) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0123477) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((BOUND(?thisPositionOn41) && BOUND(?thisPositionOn42))) .
BIND(URI(CONCAT(STR(?this), '#MF_01234a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionP4542596 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4542598 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45425MF_0123491 .
?templateMotifSequenceMatchRegionP4542596 faldo:begin ?templateMotifSequenceMatchBeginP4542597 .
?templateMotifSequenceMatchBeginP4542597 faldo:position ?templateMotifSequenceMatchBeginPositionP4542592 ;
faldo:reference isoform:P45425-1 .
?templateMotifSequenceProfileAlignmentOperationP4542598 edam:has_input signature:MF_01234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01234102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45425MF_0123493 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01234101 .
?targetMotifMatchRegionMatchBeginMF_01234101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0123494 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01234102 edam:has_input signature:MF_01234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45425MF_0123491, 1, (STRLEN(?templateMotifCigarP45425MF_0123491) - STRLEN(REPLACE(?templateMotifCigarP45425MF_0123491, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP4542592) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45425MF_0123493, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123493) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123493, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45425MF_0123493, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123493) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123493, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0123494) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45425MF_0123491, 1, (STRLEN(?templateMotifCigarP45425MF_0123491) - STRLEN(REPLACE(?templateMotifCigarP45425MF_0123491, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP4542592) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45425MF_0123493, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123493) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123493, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45425MF_0123493, 1, (STRLEN(?targetMotifMatchCigarP45425MF_0123493) - STRLEN(REPLACE(?targetMotifMatchCigarP45425MF_0123493, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0123494) - 1) AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((BOUND(?thisPositionOn48) && BOUND(?thisPositionOn49))) .
BIND(URI(CONCAT(STR(?this), '#MF_01234a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag108) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag108, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
