| http://purl.uniprot.org/unirules/MF_01260#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:444886 up:source unirule:MF_01260 .
_:444887 up:source unirule:MF_01260 .
_:444888 up:source unirule:MF_01260 .
_:444889 up:source unirule:MF_01260 .
_:444890 up:source unirule:MF_01260 .
_:444891 up:source unirule:MF_01260 .
_:444892 up:source unirule:MF_01260 .
_:444893 up:source unirule:MF_01260 .
_:444894 up:source unirule:MF_01260 .
_:444895 up:source unirule:MF_01260 .
_:444896 up:source unirule:MF_01260 .
_:444897 up:source unirule:MF_01260 .
_:444898 up:source unirule:MF_01260 .
_:444899 up:source unirule:MF_01260 .
_:444900 up:source unirule:MF_01260 .
_:444901 up:source unirule:MF_01260 .
_:444902 up:source unirule:MF_01260 .
_:444903 up:source unirule:MF_01260 .
_:444904 up:source unirule:MF_01260 .
_:444905 up:source unirule:MF_01260 .
_:444906 up:source unirule:MF_01260 .
_:444907 up:source unirule:MF_01260 .
_:444908 up:source unirule:MF_01260 .
_:444909 up:source unirule:MF_01260 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0005737 ,
GO:0009102 ,
GO:0052689 ,
keyword:378 ,
keyword:719 ,
keyword:93 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.1.85' ;
up:fullName 'Pimeloyl-[acyl-carrier protein] methyl ester esterase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Biotin synthesis protein BioH' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Carboxylesterase BioH' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'bioH' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; biotin biosynthesis.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the AB hydrolase superfamily. Carboxylesterase BioH family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf ?molecule17 .
?molecule17 rdfs:label 'substrate' .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf ?molecule25 .
?molecule25 rdfs:label 'substrate' .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Active_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Active_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf ?molecule51 .
?molecule51 rdfs:label 'substrate' .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf ?molecule59 .
?molecule59 rdfs:label 'substrate' .
_:444910 a rdf:Statement ;
up:attribution _:444886 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:444911 a rdf:Statement ;
up:attribution _:444887 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:444912 a rdf:Statement ;
up:attribution _:444888 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:444913 a rdf:Statement ;
up:attribution _:444889 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:444914 a rdf:Statement ;
up:attribution _:444890 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:444915 a rdf:Statement ;
up:attribution _:444891 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:444916 a rdf:Statement ;
up:attribution _:444892 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:444917 a rdf:Statement ;
up:attribution _:444893 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:444918 a rdf:Statement ;
up:attribution _:444894 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:444919 a rdf:Statement ;
up:attribution _:444895 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:444920 a rdf:Statement ;
up:attribution _:444896 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:444921 a rdf:Statement ;
up:attribution _:444897 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:93 .
_:444922 a rdf:Statement ;
up:attribution _:444898 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:444923 a rdf:Statement ;
up:attribution _:444899 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:719 .
_:444924 a rdf:Statement ;
up:attribution _:444900 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052689 .
_:444925 a rdf:Statement ;
up:attribution _:444901 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009102 .
_:444926 a rdf:Statement ;
up:attribution _:444902 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:444927 a rdf:Statement ;
up:source unirule:MF_01260 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:444928 a rdf:Statement ;
up:attribution _:444903 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:444929 a rdf:Statement ;
up:source unirule:MF_01260 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:444930 a rdf:Statement ;
up:attribution _:444904 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:444931 a rdf:Statement ;
up:source unirule:MF_01260 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:444932 a rdf:Statement ;
up:attribution _:444905 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:444933 a rdf:Statement ;
up:source unirule:MF_01260 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:444934 a rdf:Statement ;
up:attribution _:444906 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:444935 a rdf:Statement ;
up:source unirule:MF_01260 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:444936 a rdf:Statement ;
up:attribution _:444907 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:444937 a rdf:Statement ;
up:source unirule:MF_01260 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:444938 a rdf:Statement ;
up:attribution _:444908 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:444939 a rdf:Statement ;
up:source unirule:MF_01260 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:444940 a rdf:Statement ;
up:attribution _:444909 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01260
#Rule MF_01260 Created by:? on:2005-07-26 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01260 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01260a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP1300167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1300169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13001MF_0126062 .
?templateMotifSequenceMatchRegionP1300167 faldo:begin ?templateMotifSequenceMatchBeginP1300168 .
?templateMotifSequenceMatchBeginP1300168 faldo:position ?templateMotifSequenceMatchBeginPositionP1300163 ;
faldo:reference isoform:P13001-1 .
?templateMotifSequenceProfileAlignmentOperationP1300169 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0126073 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13001MF_0126064 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0126072 .
?targetMotifMatchRegionMatchBeginMF_0126072 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0126065 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0126073 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13001MF_0126062, 1, (STRLEN(?templateMotifCigarP13001MF_0126062) - STRLEN(REPLACE(?templateMotifCigarP13001MF_0126062, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP1300163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13001MF_0126064, 1, (STRLEN(?targetMotifMatchCigarP13001MF_0126064) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_0126064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13001MF_0126064, 1, (STRLEN(?targetMotifMatchCigarP13001MF_0126064) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_0126064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0126065) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13001MF_0126062, 1, (STRLEN(?templateMotifCigarP13001MF_0126062) - STRLEN(REPLACE(?templateMotifCigarP13001MF_0126062, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP1300163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13001MF_0126064, 1, (STRLEN(?targetMotifMatchCigarP13001MF_0126064) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_0126064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13001MF_0126064, 1, (STRLEN(?targetMotifMatchCigarP13001MF_0126064) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_0126064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0126065) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse15) .
FILTER (REGEX('S[LM]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP1300184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1300186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13001MF_0126079 .
?templateMotifSequenceMatchRegionP1300184 faldo:begin ?templateMotifSequenceMatchBeginP1300185 .
?templateMotifSequenceMatchBeginP1300185 faldo:position ?templateMotifSequenceMatchBeginPositionP1300180 ;
faldo:reference isoform:P13001-1 .
?templateMotifSequenceProfileAlignmentOperationP1300186 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0126090 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13001MF_0126081 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0126089 .
?targetMotifMatchRegionMatchBeginMF_0126089 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0126082 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0126090 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13001MF_0126079, 1, (STRLEN(?templateMotifCigarP13001MF_0126079) - STRLEN(REPLACE(?templateMotifCigarP13001MF_0126079, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP1300180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13001MF_0126081, 1, (STRLEN(?targetMotifMatchCigarP13001MF_0126081) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_0126081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13001MF_0126081, 1, (STRLEN(?targetMotifMatchCigarP13001MF_0126081) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_0126081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0126082) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13001MF_0126079, 1, (STRLEN(?templateMotifCigarP13001MF_0126079) - STRLEN(REPLACE(?templateMotifCigarP13001MF_0126079, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP1300180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13001MF_0126081, 1, (STRLEN(?targetMotifMatchCigarP13001MF_0126081) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_0126081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13001MF_0126081, 1, (STRLEN(?targetMotifMatchCigarP13001MF_0126081) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_0126081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0126082) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse23) .
FILTER (REGEX('F[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][QD]', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP13001101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13001103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13001MF_0126096 .
?templateMotifSequenceMatchRegionP13001101 faldo:begin ?templateMotifSequenceMatchBeginP13001102 .
?templateMotifSequenceMatchBeginP13001102 faldo:position ?templateMotifSequenceMatchBeginPositionP1300197 ;
faldo:reference isoform:P13001-1 .
?templateMotifSequenceProfileAlignmentOperationP13001103 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01260107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13001MF_0126098 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01260106 .
?targetMotifMatchRegionMatchBeginMF_01260106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0126099 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01260107 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13001MF_0126096, 1, (STRLEN(?templateMotifCigarP13001MF_0126096) - STRLEN(REPLACE(?templateMotifCigarP13001MF_0126096, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP1300197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13001MF_0126098, 1, (STRLEN(?targetMotifMatchCigarP13001MF_0126098) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_0126098, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13001MF_0126098, 1, (STRLEN(?targetMotifMatchCigarP13001MF_0126098) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_0126098, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0126099) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP13001116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13001118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13001MF_01260111 .
?templateMotifSequenceMatchRegionP13001116 faldo:begin ?templateMotifSequenceMatchBeginP13001117 .
?templateMotifSequenceMatchBeginP13001117 faldo:position ?templateMotifSequenceMatchBeginPositionP13001112 ;
faldo:reference isoform:P13001-1 .
?templateMotifSequenceProfileAlignmentOperationP13001118 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01260122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13001MF_01260113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01260121 .
?targetMotifMatchRegionMatchBeginMF_01260121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01260114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01260122 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13001MF_01260111, 1, (STRLEN(?templateMotifCigarP13001MF_01260111) - STRLEN(REPLACE(?templateMotifCigarP13001MF_01260111, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionP13001112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13001MF_01260113, 1, (STRLEN(?targetMotifMatchCigarP13001MF_01260113) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_01260113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13001MF_01260113, 1, (STRLEN(?targetMotifMatchCigarP13001MF_01260113) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_01260113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_01260114) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP13001131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13001133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13001MF_01260126 .
?templateMotifSequenceMatchRegionP13001131 faldo:begin ?templateMotifSequenceMatchBeginP13001132 .
?templateMotifSequenceMatchBeginP13001132 faldo:position ?templateMotifSequenceMatchBeginPositionP13001127 ;
faldo:reference isoform:P13001-1 .
?templateMotifSequenceProfileAlignmentOperationP13001133 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01260137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13001MF_01260128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01260136 .
?targetMotifMatchRegionMatchBeginMF_01260136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01260129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01260137 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13001MF_01260126, 1, (STRLEN(?templateMotifCigarP13001MF_01260126) - STRLEN(REPLACE(?templateMotifCigarP13001MF_01260126, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionP13001127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13001MF_01260128, 1, (STRLEN(?targetMotifMatchCigarP13001MF_01260128) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_01260128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13001MF_01260128, 1, (STRLEN(?targetMotifMatchCigarP13001MF_01260128) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_01260128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_01260129) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP13001146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13001148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13001MF_01260141 .
?templateMotifSequenceMatchRegionP13001146 faldo:begin ?templateMotifSequenceMatchBeginP13001147 .
?templateMotifSequenceMatchBeginP13001147 faldo:position ?templateMotifSequenceMatchBeginPositionP13001142 ;
faldo:reference isoform:P13001-1 .
?templateMotifSequenceProfileAlignmentOperationP13001148 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01260152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13001MF_01260143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01260151 .
?targetMotifMatchRegionMatchBeginMF_01260151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01260144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01260152 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13001MF_01260141, 1, (STRLEN(?templateMotifCigarP13001MF_01260141) - STRLEN(REPLACE(?templateMotifCigarP13001MF_01260141, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP13001142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13001MF_01260143, 1, (STRLEN(?targetMotifMatchCigarP13001MF_01260143) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_01260143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13001MF_01260143, 1, (STRLEN(?targetMotifMatchCigarP13001MF_01260143) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_01260143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01260144) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP13001161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13001163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13001MF_01260156 .
?templateMotifSequenceMatchRegionP13001161 faldo:begin ?templateMotifSequenceMatchBeginP13001162 .
?templateMotifSequenceMatchBeginP13001162 faldo:position ?templateMotifSequenceMatchBeginPositionP13001157 ;
faldo:reference isoform:P13001-1 .
?templateMotifSequenceProfileAlignmentOperationP13001163 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01260167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13001MF_01260158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01260166 .
?targetMotifMatchRegionMatchBeginMF_01260166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01260159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01260167 edam:has_input signature:MF_01260 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13001MF_01260156, 1, (STRLEN(?templateMotifCigarP13001MF_01260156) - STRLEN(REPLACE(?templateMotifCigarP13001MF_01260156, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionP13001157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13001MF_01260158, 1, (STRLEN(?targetMotifMatchCigarP13001MF_01260158) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_01260158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13001MF_01260158, 1, (STRLEN(?targetMotifMatchCigarP13001MF_01260158) - STRLEN(REPLACE(?targetMotifMatchCigarP13001MF_01260158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01260159) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01260a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
}
"xsd:string |
