| http://purl.uniprot.org/unirules/MF_01267#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:449670 up:source unirule:MF_01267 .
_:449671 up:source unirule:MF_01267 .
_:449672 up:source unirule:MF_01267 .
_:449673 up:source unirule:MF_01267 .
_:449674 up:source unirule:MF_01267 .
_:449675 up:source unirule:MF_01267 .
_:449676 up:source unirule:MF_01267 .
_:449677 up:source unirule:MF_01267 .
_:449678 up:source unirule:MF_01267 .
_:449679 up:source unirule:MF_01267 .
_:449680 up:source unirule:MF_01267 .
_:449681 up:source unirule:MF_01267 .
_:449682 up:source unirule:MF_01267 .
_:449683 up:source unirule:MF_01267 .
_:449684 up:source unirule:MF_01267 .
_:449685 up:source unirule:MF_01267 .
_:449686 up:source unirule:MF_01267 .
_:449687 up:source unirule:MF_01267 .
_:449688 up:source unirule:MF_01267 .
_:449689 up:source unirule:MF_01267 .
_:449690 up:source unirule:MF_01267 .
_:449691 up:source unirule:MF_01267 .
_:449692 up:source unirule:MF_01267 .
_:449693 up:source unirule:MF_01267 .
_:449694 up:source unirule:MF_01267 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0016831 ,
GO:0019854 ,
keyword:119 ,
keyword:210 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.85' ;
up:fullName '3-keto-L-gulonate-6-phosphate decarboxylase UlaD' ;
rdf:type up:Structured_Name .
?name1 up:fullName '3-dehydro-L-gulonate-6-phosphate decarboxylase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'KGPDC' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'L-ascorbate utilization protein D' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'ulaD' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the decarboxylation of 3-keto-L-gulonate-6-P into L-xylulose-5-P. Is involved in the anaerobic L-ascorbate utilization.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor degradation; L-ascorbate degradation; D-xylulose 5-phosphate from L-ascorbate: step 2/4.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Induction_Annotation ;
rdfs:comment 'Induced by L-ascorbate. Repressed by UlaR.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the HPS/KGPDC family. KGPDC subfamily.' .
?case12 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs13 up:annotation ?annotation14 ,
?annotation20 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:18420 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:18420 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf ?molecule43 .
?molecule43 rdfs:label 'substrate' .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf ?molecule51 .
?molecule51 rdfs:label 'substrate' .
_:449695 a rdf:Statement ;
up:attribution _:449670 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:449696 a rdf:Statement ;
up:attribution _:449671 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:449697 a rdf:Statement ;
up:attribution _:449672 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:449698 a rdf:Statement ;
up:attribution _:449673 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:449699 a rdf:Statement ;
up:attribution _:449674 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:449700 a rdf:Statement ;
up:attribution _:449675 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:449701 a rdf:Statement ;
up:attribution _:449676 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:449702 a rdf:Statement ;
up:attribution _:449677 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:449703 a rdf:Statement ;
up:attribution _:449678 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:449704 a rdf:Statement ;
up:attribution _:449679 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:449705 a rdf:Statement ;
up:attribution _:449680 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:449706 a rdf:Statement ;
up:attribution _:449681 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:449707 a rdf:Statement ;
up:attribution _:449682 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:210 .
_:449708 a rdf:Statement ;
up:attribution _:449683 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:449709 a rdf:Statement ;
up:attribution _:449684 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016831 .
_:449710 a rdf:Statement ;
up:attribution _:449685 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019854 .
_:449711 a rdf:Statement ;
up:attribution _:449686 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:449712 a rdf:Statement ;
up:attribution _:449687 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:449713 a rdf:Statement ;
up:attribution _:449688 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:449714 a rdf:Statement ;
up:source unirule:MF_01267 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:449715 a rdf:Statement ;
up:attribution _:449689 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:449716 a rdf:Statement ;
up:source unirule:MF_01267 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:449717 a rdf:Statement ;
up:attribution _:449690 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:449718 a rdf:Statement ;
up:source unirule:MF_01267 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:449719 a rdf:Statement ;
up:attribution _:449691 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:449720 a rdf:Statement ;
up:source unirule:MF_01267 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:449721 a rdf:Statement ;
up:attribution _:449692 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:449722 a rdf:Statement ;
up:source unirule:MF_01267 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:449723 a rdf:Statement ;
up:attribution _:449693 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:449724 a rdf:Statement ;
up:source unirule:MF_01267 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:449725 a rdf:Statement ;
up:attribution _:449694 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01267
#Rule MF_01267 Created by:? on:2006-05-02 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01267 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01267a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionP3930459 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3930461 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39304MF_0126754 .
?templateMotifSequenceMatchRegionP3930459 faldo:begin ?templateMotifSequenceMatchBeginP3930460 .
?templateMotifSequenceMatchBeginP3930460 faldo:position ?templateMotifSequenceMatchBeginPositionP3930455 ;
faldo:reference isoform:P39304-1 .
?templateMotifSequenceProfileAlignmentOperationP3930461 edam:has_input signature:MF_01267 ;
rdf:type edam:operation_0300 .
?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0126765 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39304MF_0126756 .
?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0126764 .
?targetMotifMatchRegionMatchBeginMF_0126764 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0126757 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0126765 edam:has_input signature:MF_01267 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39304MF_0126754, 1, (STRLEN(?templateMotifCigarP39304MF_0126754) - STRLEN(REPLACE(?templateMotifCigarP39304MF_0126754, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP3930455) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39304MF_0126756, 1, (STRLEN(?targetMotifMatchCigarP39304MF_0126756) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_0126756, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39304MF_0126756, 1, (STRLEN(?targetMotifMatchCigarP39304MF_0126756) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_0126756, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0126757) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39304MF_0126754, 1, (STRLEN(?templateMotifCigarP39304MF_0126754) - STRLEN(REPLACE(?templateMotifCigarP39304MF_0126754, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionP3930455) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39304MF_0126756, 1, (STRLEN(?targetMotifMatchCigarP39304MF_0126756) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_0126756, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39304MF_0126756, 1, (STRLEN(?targetMotifMatchCigarP39304MF_0126756) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_0126756, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0126757) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionP3930477 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3930479 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39304MF_0126772 .
?templateMotifSequenceMatchRegionP3930477 faldo:begin ?templateMotifSequenceMatchBeginP3930478 .
?templateMotifSequenceMatchBeginP3930478 faldo:position ?templateMotifSequenceMatchBeginPositionP3930473 ;
faldo:reference isoform:P39304-1 .
?templateMotifSequenceProfileAlignmentOperationP3930479 edam:has_input signature:MF_01267 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0126783 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39304MF_0126774 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0126782 .
?targetMotifMatchRegionMatchBeginMF_0126782 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0126775 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0126783 edam:has_input signature:MF_01267 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39304MF_0126772, 1, (STRLEN(?templateMotifCigarP39304MF_0126772) - STRLEN(REPLACE(?templateMotifCigarP39304MF_0126772, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP3930473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39304MF_0126774, 1, (STRLEN(?targetMotifMatchCigarP39304MF_0126774) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_0126774, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39304MF_0126774, 1, (STRLEN(?targetMotifMatchCigarP39304MF_0126774) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_0126774, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0126775) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs2t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER (BOUND(?thisPositionOn30)) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionP3930492 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3930494 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39304MF_0126787 .
?templateMotifSequenceMatchRegionP3930492 faldo:begin ?templateMotifSequenceMatchBeginP3930493 .
?templateMotifSequenceMatchBeginP3930493 faldo:position ?templateMotifSequenceMatchBeginPositionP3930488 ;
faldo:reference isoform:P39304-1 .
?templateMotifSequenceProfileAlignmentOperationP3930494 edam:has_input signature:MF_01267 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0126798 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39304MF_0126789 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0126797 .
?targetMotifMatchRegionMatchBeginMF_0126797 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0126790 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0126798 edam:has_input signature:MF_01267 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39304MF_0126787, 1, (STRLEN(?templateMotifCigarP39304MF_0126787) - STRLEN(REPLACE(?templateMotifCigarP39304MF_0126787, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP3930488) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39304MF_0126789, 1, (STRLEN(?targetMotifMatchCigarP39304MF_0126789) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_0126789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39304MF_0126789, 1, (STRLEN(?targetMotifMatchCigarP39304MF_0126789) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_0126789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0126790) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER (BOUND(?thisPositionOn36)) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP39304107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39304109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39304MF_01267102 .
?templateMotifSequenceMatchRegionP39304107 faldo:begin ?templateMotifSequenceMatchBeginP39304108 .
?templateMotifSequenceMatchBeginP39304108 faldo:position ?templateMotifSequenceMatchBeginPositionP39304103 ;
faldo:reference isoform:P39304-1 .
?templateMotifSequenceProfileAlignmentOperationP39304109 edam:has_input signature:MF_01267 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01267113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39304MF_01267104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01267112 .
?targetMotifMatchRegionMatchBeginMF_01267112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01267105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01267113 edam:has_input signature:MF_01267 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39304MF_01267102, 1, (STRLEN(?templateMotifCigarP39304MF_01267102) - STRLEN(REPLACE(?templateMotifCigarP39304MF_01267102, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP39304103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39304MF_01267104, 1, (STRLEN(?targetMotifMatchCigarP39304MF_01267104) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_01267104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39304MF_01267104, 1, (STRLEN(?targetMotifMatchCigarP39304MF_01267104) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_01267104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01267105) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP39304122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39304124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39304MF_01267117 .
?templateMotifSequenceMatchRegionP39304122 faldo:begin ?templateMotifSequenceMatchBeginP39304123 .
?templateMotifSequenceMatchBeginP39304123 faldo:position ?templateMotifSequenceMatchBeginPositionP39304118 ;
faldo:reference isoform:P39304-1 .
?templateMotifSequenceProfileAlignmentOperationP39304124 edam:has_input signature:MF_01267 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01267128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39304MF_01267119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01267127 .
?targetMotifMatchRegionMatchBeginMF_01267127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01267120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01267128 edam:has_input signature:MF_01267 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39304MF_01267117, 1, (STRLEN(?templateMotifCigarP39304MF_01267117) - STRLEN(REPLACE(?templateMotifCigarP39304MF_01267117, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP39304118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39304MF_01267119, 1, (STRLEN(?targetMotifMatchCigarP39304MF_01267119) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_01267119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39304MF_01267119, 1, (STRLEN(?targetMotifMatchCigarP39304MF_01267119) - STRLEN(REPLACE(?targetMotifMatchCigarP39304MF_01267119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01267120) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs2t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01267a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag132) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag132, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
