| http://purl.uniprot.org/unirules/MF_01272#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:452296 up:source unirule:MF_01272 .
_:452297 up:source unirule:MF_01272 .
_:452298 up:source unirule:MF_01272 .
_:452299 up:source unirule:MF_01272 .
_:452300 up:source unirule:MF_01272 .
_:452301 up:source unirule:MF_01272 .
_:452302 up:source unirule:MF_01272 .
_:452303 up:source unirule:MF_01272 .
_:452304 up:source unirule:MF_01272 .
_:452305 up:source unirule:MF_01272 .
_:452306 up:source unirule:MF_01272 .
_:452307 up:source unirule:MF_01272 .
_:452308 up:source unirule:MF_01272 .
_:452309 up:source unirule:MF_01272 .
_:452310 up:source unirule:MF_01272 .
_:452311 up:source unirule:MF_01272 .
_:452312 up:source unirule:MF_01272 .
_:452313 up:source unirule:MF_01272 .
_:452314 up:source unirule:MF_01272 .
_:452315 up:source unirule:MF_01272 .
_:452316 up:source unirule:MF_01272 .
_:452317 up:source unirule:MF_01272 .
_:452318 up:source unirule:MF_01272 .
_:452319 up:source unirule:MF_01272 .
_:452320 up:source unirule:MF_01272 .
_:452321 up:source unirule:MF_01272 .
_:452322 up:source unirule:MF_01272 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0004392 ,
GO:0005506 ,
GO:0005737 ,
GO:0016705 ,
GO:0020037 ,
GO:0042167 ,
keyword:349 ,
keyword:408 ,
keyword:479 ,
keyword:503 ,
keyword:560 ,
keyword:963 .
?annotation0 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation1 a up:Subcellular_Location_Annotation .
?annotation1li2 up:cellularComponent .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the antibiotic biosynthesis monooxygenase family. Heme-degrading monooxygenase IsdG subfamily.' .
?case4 up:alternativeName ?name6 ,
?name7 ,
?name8 ;
up:recommendedName ?name5 .
?name5 up:ecName '1.14.99.48' ;
up:fullName 'Heme oxygenase (staphylobilin-producing)' ;
rdf:type up:Structured_Name .
?name6 up:fullName 'Heme-degrading monooxygenase' ;
rdf:type up:Structured_Name .
?name7 up:fullName 'Iron-regulated surface determinant' ;
rdf:type up:Structured_Name .
?name8 up:fullName 'Iron-responsive surface determinant' ;
rdf:type up:Structured_Name .
?case9 up:alternativeName ?name11 ,
?name12 ,
?name13 ;
up:recommendedName ?name10 .
?name10 up:ecName '1.14.14.18' ;
up:fullName 'Heme-degrading monooxygenase' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'Heme oxygenase' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'Iron-regulated surface determinant' ;
rdf:type up:Structured_Name .
?name13 up:fullName 'Iron-responsive surface determinant' ;
rdf:type up:Structured_Name .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:30413 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:24875 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 up:ligandPart ?ligand38 ;
rdfs:subClassOf chebi:18248 ,
chebi:30413 .
_:452323 a rdf:Statement ;
up:attribution _:452296 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:452324 a rdf:Statement ;
up:attribution _:452297 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:452325 a rdf:Statement ;
up:attribution _:452298 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:452326 a rdf:Statement ;
up:attribution _:452299 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:452327 a rdf:Statement ;
up:attribution _:452300 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:349 .
_:452328 a rdf:Statement ;
up:attribution _:452301 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:452329 a rdf:Statement ;
up:attribution _:452302 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:452330 a rdf:Statement ;
up:attribution _:452303 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:503 .
_:452331 a rdf:Statement ;
up:attribution _:452304 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:452332 a rdf:Statement ;
up:attribution _:452305 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:452333 a rdf:Statement ;
up:attribution _:452306 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004392 .
_:452334 a rdf:Statement ;
up:attribution _:452307 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016705 .
_:452335 a rdf:Statement ;
up:attribution _:452308 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0020037 .
_:452336 a rdf:Statement ;
up:attribution _:452309 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:452337 a rdf:Statement ;
up:attribution _:452310 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042167 .
_:452338 a rdf:Statement ;
up:attribution _:452311 ;
rdf:subject ?case4 ;
rdf:predicate up:recommendedName ;
rdf:object ?name5 .
_:452339 a rdf:Statement ;
up:attribution _:452312 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name6 .
_:452340 a rdf:Statement ;
up:attribution _:452313 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name7 .
_:452341 a rdf:Statement ;
up:attribution _:452314 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:452342 a rdf:Statement ;
up:attribution _:452315 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:452343 a rdf:Statement ;
up:attribution _:452316 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:452344 a rdf:Statement ;
up:attribution _:452317 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:452345 a rdf:Statement ;
up:attribution _:452318 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name13 .
_:452346 a rdf:Statement ;
up:source unirule:MF_01272 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:452347 a rdf:Statement ;
up:attribution _:452319 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:452348 a rdf:Statement ;
up:source unirule:MF_01272 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:452349 a rdf:Statement ;
up:attribution _:452320 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:452350 a rdf:Statement ;
up:source unirule:MF_01272 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:452351 a rdf:Statement ;
up:attribution _:452321 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:452352 a rdf:Statement ;
up:source unirule:MF_01272 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:452353 a rdf:Statement ;
up:attribution _:452322 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01272
#Rule MF_01272 Created by:? on:2006-11-06 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01272 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_01272a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionQ7A82746 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A82748 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A827MF_0127241 .
?templateMotifSequenceMatchRegionQ7A82746 faldo:begin ?templateMotifSequenceMatchBeginQ7A82747 .
?templateMotifSequenceMatchBeginQ7A82747 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A82742 ;
faldo:reference isoform:Q7A827-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A82748 edam:has_input signature:MF_01272 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127252 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A827MF_0127243 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127251 .
?targetMotifMatchRegionMatchBeginMF_0127251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127244 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127252 edam:has_input signature:MF_01272 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A827MF_0127241, 1, (STRLEN(?templateMotifCigarQ7A827MF_0127241) - STRLEN(REPLACE(?templateMotifCigarQ7A827MF_0127241, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionQ7A82742) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A827MF_0127243, 1, (STRLEN(?targetMotifMatchCigarQ7A827MF_0127243) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A827MF_0127243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A827MF_0127243, 1, (STRLEN(?targetMotifMatchCigarQ7A827MF_0127243) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A827MF_0127243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0127244) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER (BOUND(?thisPositionOn18)) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionQ7A82761 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A82763 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A827MF_0127256 .
?templateMotifSequenceMatchRegionQ7A82761 faldo:begin ?templateMotifSequenceMatchBeginQ7A82762 .
?templateMotifSequenceMatchBeginQ7A82762 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A82757 ;
faldo:reference isoform:Q7A827-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A82763 edam:has_input signature:MF_01272 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A827MF_0127258 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127266 .
?targetMotifMatchRegionMatchBeginMF_0127266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127267 edam:has_input signature:MF_01272 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A827MF_0127256, 1, (STRLEN(?templateMotifCigarQ7A827MF_0127256) - STRLEN(REPLACE(?templateMotifCigarQ7A827MF_0127256, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionQ7A82757) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A827MF_0127258, 1, (STRLEN(?targetMotifMatchCigarQ7A827MF_0127258) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A827MF_0127258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A827MF_0127258, 1, (STRLEN(?targetMotifMatchCigarQ7A827MF_0127258) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A827MF_0127258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0127259) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A827MF_0127256, 1, (STRLEN(?templateMotifCigarQ7A827MF_0127256) - STRLEN(REPLACE(?templateMotifCigarQ7A827MF_0127256, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionQ7A82757) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A827MF_0127258, 1, (STRLEN(?targetMotifMatchCigarQ7A827MF_0127258) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A827MF_0127258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A827MF_0127258, 1, (STRLEN(?targetMotifMatchCigarQ7A827MF_0127258) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A827MF_0127258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0127259) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER (REGEX('RFY[ARNDCQEGHILKMFPSTWYVBZJUOX]R[ARNDCQEGHILKMFPSTWYVBZJUOX]GI', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionQ7A82778 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A82780 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A827MF_0127273 .
?templateMotifSequenceMatchRegionQ7A82778 faldo:begin ?templateMotifSequenceMatchBeginQ7A82779 .
?templateMotifSequenceMatchBeginQ7A82779 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A82774 ;
faldo:reference isoform:Q7A827-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A82780 edam:has_input signature:MF_01272 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A827MF_0127275 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127283 .
?targetMotifMatchRegionMatchBeginMF_0127283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127284 edam:has_input signature:MF_01272 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A827MF_0127273, 1, (STRLEN(?templateMotifCigarQ7A827MF_0127273) - STRLEN(REPLACE(?templateMotifCigarQ7A827MF_0127273, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionQ7A82774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A827MF_0127275, 1, (STRLEN(?targetMotifMatchCigarQ7A827MF_0127275) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A827MF_0127275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A827MF_0127275, 1, (STRLEN(?targetMotifMatchCigarQ7A827MF_0127275) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A827MF_0127275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0127276) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ7A82793 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A82795 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A827MF_0127288 .
?templateMotifSequenceMatchRegionQ7A82793 faldo:begin ?templateMotifSequenceMatchBeginQ7A82794 .
?templateMotifSequenceMatchBeginQ7A82794 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A82789 ;
faldo:reference isoform:Q7A827-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A82795 edam:has_input signature:MF_01272 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127299 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A827MF_0127290 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127298 .
?targetMotifMatchRegionMatchBeginMF_0127298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127291 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127299 edam:has_input signature:MF_01272 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A827MF_0127288, 1, (STRLEN(?templateMotifCigarQ7A827MF_0127288) - STRLEN(REPLACE(?templateMotifCigarQ7A827MF_0127288, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionQ7A82789) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A827MF_0127290, 1, (STRLEN(?targetMotifMatchCigarQ7A827MF_0127290) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A827MF_0127290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A827MF_0127290, 1, (STRLEN(?targetMotifMatchCigarQ7A827MF_0127290) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A827MF_0127290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0127291) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1279 .
BIND(?this AS ?case4) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1279 .
})) .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a12')) AS ?name12) .
BIND(URI(CONCAT(STR(?this), '#MF_01272a13')) AS ?name13) .
}
}
"xsd:string |
