| http://purl.uniprot.org/unirules/MF_01273#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:452813 up:source unirule:MF_01273 .
_:452814 up:source unirule:MF_01273 .
_:452815 up:source unirule:MF_01273 .
_:452816 up:source unirule:MF_01273 .
_:452817 up:source unirule:MF_01273 .
_:452818 up:source unirule:MF_01273 .
_:452819 up:source unirule:MF_01273 .
_:452820 up:source unirule:MF_01273 .
_:452821 up:source unirule:MF_01273 .
_:452822 up:source unirule:MF_01273 .
_:452823 up:source unirule:MF_01273 .
_:452824 up:source unirule:MF_01273 .
_:452825 up:source unirule:MF_01273 .
_:452826 up:source unirule:MF_01273 .
_:452827 up:source unirule:MF_01273 .
_:452828 up:source unirule:MF_01273 .
_:452829 up:source unirule:MF_01273 .
_:452830 up:source unirule:MF_01273 .
_:452831 up:source unirule:MF_01273 .
_:452832 up:source unirule:MF_01273 .
_:452833 up:source unirule:MF_01273 .
_:452834 up:source unirule:MF_01273 .
_:452835 up:source unirule:MF_01273 .
_:452836 up:source unirule:MF_01273 .
_:452837 up:source unirule:MF_01273 .
_:452838 up:source unirule:MF_01273 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0004594 ,
GO:0005524 ,
GO:0005737 ,
GO:0015937 ,
keyword:173 ,
keyword:418 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.33' ;
up:fullName 'Type II pantothenate kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'PanK-II' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Pantothenic acid kinase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'coaW' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 1/5.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the type II pantothenate kinase family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:30616 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:30616 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:30616 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:30616 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:30616 .
_:452839 a rdf:Statement ;
up:attribution _:452813 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:452840 a rdf:Statement ;
up:attribution _:452814 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:452841 a rdf:Statement ;
up:attribution _:452815 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:452842 a rdf:Statement ;
up:attribution _:452816 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:452843 a rdf:Statement ;
up:attribution _:452817 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:452844 a rdf:Statement ;
up:attribution _:452818 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:452845 a rdf:Statement ;
up:attribution _:452819 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:452846 a rdf:Statement ;
up:attribution _:452820 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:452847 a rdf:Statement ;
up:attribution _:452821 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:452848 a rdf:Statement ;
up:attribution _:452822 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:452849 a rdf:Statement ;
up:attribution _:452823 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:452850 a rdf:Statement ;
up:attribution _:452824 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:452851 a rdf:Statement ;
up:attribution _:452825 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:173 .
_:452852 a rdf:Statement ;
up:attribution _:452826 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:452853 a rdf:Statement ;
up:attribution _:452827 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:452854 a rdf:Statement ;
up:attribution _:452828 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:452855 a rdf:Statement ;
up:attribution _:452829 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:452856 a rdf:Statement ;
up:attribution _:452830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004594 .
_:452857 a rdf:Statement ;
up:attribution _:452831 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015937 .
_:452858 a rdf:Statement ;
up:attribution _:452832 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:452859 a rdf:Statement ;
up:source unirule:MF_01273 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:452860 a rdf:Statement ;
up:attribution _:452833 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:452861 a rdf:Statement ;
up:source unirule:MF_01273 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:452862 a rdf:Statement ;
up:attribution _:452834 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:452863 a rdf:Statement ;
up:source unirule:MF_01273 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:452864 a rdf:Statement ;
up:attribution _:452835 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:452865 a rdf:Statement ;
up:source unirule:MF_01273 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:452866 a rdf:Statement ;
up:attribution _:452836 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:452867 a rdf:Statement ;
up:source unirule:MF_01273 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:452868 a rdf:Statement ;
up:attribution _:452837 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:452869 a rdf:Statement ;
up:source unirule:MF_01273 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:452870 a rdf:Statement ;
up:attribution _:452838 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01273
#Rule MF_01273 Created by:? on:2006-11-08 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01273 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_01273a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionQ6G7I058 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6G7I060 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6G7I0MF_0127353 .
?templateMotifSequenceMatchRegionQ6G7I058 faldo:begin ?templateMotifSequenceMatchBeginQ6G7I059 .
?templateMotifSequenceMatchBeginQ6G7I059 faldo:position ?templateMotifSequenceMatchBeginPositionQ6G7I054 ;
faldo:reference isoform:Q6G7I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ6G7I060 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127364 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6G7I0MF_0127355 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127363 .
?targetMotifMatchRegionMatchBeginMF_0127363 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127356 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127364 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6G7I0MF_0127353, 1, (STRLEN(?templateMotifCigarQ6G7I0MF_0127353) - STRLEN(REPLACE(?templateMotifCigarQ6G7I0MF_0127353, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionQ6G7I054) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_0127355, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_0127355) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_0127355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_0127355, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_0127355) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_0127355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0127356) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6G7I0MF_0127353, 1, (STRLEN(?templateMotifCigarQ6G7I0MF_0127353) - STRLEN(REPLACE(?templateMotifCigarQ6G7I0MF_0127353, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionQ6G7I054) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_0127355, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_0127355) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_0127355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_0127355, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_0127355) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_0127355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0127356) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionQ6G7I075 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6G7I077 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6G7I0MF_0127370 .
?templateMotifSequenceMatchRegionQ6G7I075 faldo:begin ?templateMotifSequenceMatchBeginQ6G7I076 .
?templateMotifSequenceMatchBeginQ6G7I076 faldo:position ?templateMotifSequenceMatchBeginPositionQ6G7I071 ;
faldo:reference isoform:Q6G7I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ6G7I077 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127381 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6G7I0MF_0127372 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127380 .
?targetMotifMatchRegionMatchBeginMF_0127380 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127373 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127381 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6G7I0MF_0127370, 1, (STRLEN(?templateMotifCigarQ6G7I0MF_0127370) - STRLEN(REPLACE(?templateMotifCigarQ6G7I0MF_0127370, CONCAT('^(?:-*[^-]){', STR(((121 - ?templateMotifSequenceMatchBeginPositionQ6G7I071) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_0127372, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_0127372) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_0127372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_0127372, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_0127372) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_0127372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0127373) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6G7I0MF_0127370, 1, (STRLEN(?templateMotifCigarQ6G7I0MF_0127370) - STRLEN(REPLACE(?templateMotifCigarQ6G7I0MF_0127370, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionQ6G7I071) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_0127372, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_0127372) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_0127372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_0127372, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_0127372) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_0127372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0127373) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionQ6G7I092 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6G7I094 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6G7I0MF_0127387 .
?templateMotifSequenceMatchRegionQ6G7I092 faldo:begin ?templateMotifSequenceMatchBeginQ6G7I093 .
?templateMotifSequenceMatchBeginQ6G7I093 faldo:position ?templateMotifSequenceMatchBeginPositionQ6G7I088 ;
faldo:reference isoform:Q6G7I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ6G7I094 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127398 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6G7I0MF_0127389 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127397 .
?targetMotifMatchRegionMatchBeginMF_0127397 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127390 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127398 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6G7I0MF_0127387, 1, (STRLEN(?templateMotifCigarQ6G7I0MF_0127387) - STRLEN(REPLACE(?templateMotifCigarQ6G7I0MF_0127387, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionQ6G7I088) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_0127389, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_0127389) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_0127389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_0127389, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_0127389) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_0127389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0127390) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionQ6G7I0107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6G7I0109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6G7I0MF_01273102 .
?templateMotifSequenceMatchRegionQ6G7I0107 faldo:begin ?templateMotifSequenceMatchBeginQ6G7I0108 .
?templateMotifSequenceMatchBeginQ6G7I0108 faldo:position ?templateMotifSequenceMatchBeginPositionQ6G7I0103 ;
faldo:reference isoform:Q6G7I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ6G7I0109 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01273113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6G7I0MF_01273104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01273112 .
?targetMotifMatchRegionMatchBeginMF_01273112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01273105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01273113 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6G7I0MF_01273102, 1, (STRLEN(?templateMotifCigarQ6G7I0MF_01273102) - STRLEN(REPLACE(?templateMotifCigarQ6G7I0MF_01273102, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionQ6G7I0103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_01273104, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_01273104) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_01273104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_01273104, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_01273104) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_01273104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01273105) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionQ6G7I0122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6G7I0124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6G7I0MF_01273117 .
?templateMotifSequenceMatchRegionQ6G7I0122 faldo:begin ?templateMotifSequenceMatchBeginQ6G7I0123 .
?templateMotifSequenceMatchBeginQ6G7I0123 faldo:position ?templateMotifSequenceMatchBeginPositionQ6G7I0118 ;
faldo:reference isoform:Q6G7I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ6G7I0124 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01273128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6G7I0MF_01273119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01273127 .
?targetMotifMatchRegionMatchBeginMF_01273127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01273120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01273128 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6G7I0MF_01273117, 1, (STRLEN(?templateMotifCigarQ6G7I0MF_01273117) - STRLEN(REPLACE(?templateMotifCigarQ6G7I0MF_01273117, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionQ6G7I0118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_01273119, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_01273119) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_01273119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_01273119, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_01273119) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_01273119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01273120) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionQ6G7I0137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6G7I0139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6G7I0MF_01273132 .
?templateMotifSequenceMatchRegionQ6G7I0137 faldo:begin ?templateMotifSequenceMatchBeginQ6G7I0138 .
?templateMotifSequenceMatchBeginQ6G7I0138 faldo:position ?templateMotifSequenceMatchBeginPositionQ6G7I0133 ;
faldo:reference isoform:Q6G7I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ6G7I0139 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01273143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6G7I0MF_01273134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01273142 .
?targetMotifMatchRegionMatchBeginMF_01273142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01273135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01273143 edam:has_input signature:MF_01273 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6G7I0MF_01273132, 1, (STRLEN(?templateMotifCigarQ6G7I0MF_01273132) - STRLEN(REPLACE(?templateMotifCigarQ6G7I0MF_01273132, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionQ6G7I0133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_01273134, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_01273134) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_01273134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6G7I0MF_01273134, 1, (STRLEN(?targetMotifMatchCigarQ6G7I0MF_01273134) - STRLEN(REPLACE(?targetMotifMatchCigarQ6G7I0MF_01273134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01273135) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01273a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
}
"xsd:string |
