| http://purl.uniprot.org/unirules/MF_01279#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:456167 up:source unirule:MF_01279 .
_:456168 up:source unirule:MF_01279 .
_:456169 up:source unirule:MF_01279 .
_:456170 up:source unirule:MF_01279 .
_:456171 up:source unirule:MF_01279 .
_:456172 up:source unirule:MF_01279 .
_:456173 up:source unirule:MF_01279 .
_:456174 up:source unirule:MF_01279 .
_:456175 up:source unirule:MF_01279 .
_:456176 up:source unirule:MF_01279 .
_:456177 up:source unirule:MF_01279 .
_:456178 up:source unirule:MF_01279 .
_:456179 up:source unirule:MF_01279 .
_:456180 up:source unirule:MF_01279 .
_:456181 up:source unirule:MF_01279 .
_:456182 up:source unirule:MF_01279 .
_:456183 up:source unirule:MF_01279 .
_:456184 up:source unirule:MF_01279 .
_:456185 up:source unirule:MF_01279 .
_:456186 up:source unirule:MF_01279 .
_:456187 up:source unirule:MF_01279 .
_:456188 up:source unirule:MF_01279 .
_:456189 up:source unirule:MF_01279 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008235 ,
GO:0016805 ,
keyword:224 ,
keyword:378 ,
keyword:464 ,
keyword:479 ,
keyword:482 ,
keyword:645 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.13.9' ;
up:fullName 'Xaa-Pro dipeptidase' ;
up:shortName 'X-Pro dipeptidase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Imidodipeptidase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Proline dipeptidase' ;
up:shortName 'Prolidase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'pepQ' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Splits dipeptides with a prolyl residue in the C-terminal position.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 manganese ions per subunit.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M24B family. Bacterial-type prolidase subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:29035 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29035 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29035 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29035 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:29035 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29035 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:29035 .
_:456190 a rdf:Statement ;
up:attribution _:456167 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:456191 a rdf:Statement ;
up:attribution _:456168 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:456192 a rdf:Statement ;
up:attribution _:456169 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:456193 a rdf:Statement ;
up:attribution _:456170 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:456194 a rdf:Statement ;
up:attribution _:456171 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:456195 a rdf:Statement ;
up:attribution _:456172 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:456196 a rdf:Statement ;
up:attribution _:456173 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:456197 a rdf:Statement ;
up:attribution _:456174 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:456198 a rdf:Statement ;
up:attribution _:456175 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:224 .
_:456199 a rdf:Statement ;
up:attribution _:456176 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:456200 a rdf:Statement ;
up:attribution _:456177 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:456201 a rdf:Statement ;
up:attribution _:456178 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:456202 a rdf:Statement ;
up:attribution _:456179 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:482 .
_:456203 a rdf:Statement ;
up:attribution _:456180 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:456204 a rdf:Statement ;
up:attribution _:456181 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008235 .
_:456205 a rdf:Statement ;
up:attribution _:456182 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016805 .
_:456206 a rdf:Statement ;
up:source unirule:MF_01279 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:456207 a rdf:Statement ;
up:attribution _:456183 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:456208 a rdf:Statement ;
up:source unirule:MF_01279 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:456209 a rdf:Statement ;
up:attribution _:456184 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:456210 a rdf:Statement ;
up:source unirule:MF_01279 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:456211 a rdf:Statement ;
up:attribution _:456185 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:456212 a rdf:Statement ;
up:source unirule:MF_01279 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:456213 a rdf:Statement ;
up:attribution _:456186 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:456214 a rdf:Statement ;
up:source unirule:MF_01279 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:456215 a rdf:Statement ;
up:attribution _:456187 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:456216 a rdf:Statement ;
up:source unirule:MF_01279 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:456217 a rdf:Statement ;
up:attribution _:456188 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:456218 a rdf:Statement ;
up:source unirule:MF_01279 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:456219 a rdf:Statement ;
up:attribution _:456189 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01279
#Rule MF_01279 Created by:? on:2007-08-15 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01279 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01279a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionP2116563 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2116565 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21165MF_0127958 .
?templateMotifSequenceMatchRegionP2116563 faldo:begin ?templateMotifSequenceMatchBeginP2116564 .
?templateMotifSequenceMatchBeginP2116564 faldo:position ?templateMotifSequenceMatchBeginPositionP2116559 ;
faldo:reference isoform:P21165-1 .
?templateMotifSequenceProfileAlignmentOperationP2116565 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127969 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21165MF_0127960 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127968 .
?targetMotifMatchRegionMatchBeginMF_0127968 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127961 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127969 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21165MF_0127958, 1, (STRLEN(?templateMotifCigarP21165MF_0127958) - STRLEN(REPLACE(?templateMotifCigarP21165MF_0127958, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionP2116559) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21165MF_0127960, 1, (STRLEN(?targetMotifMatchCigarP21165MF_0127960) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_0127960, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21165MF_0127960, 1, (STRLEN(?targetMotifMatchCigarP21165MF_0127960) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_0127960, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0127961) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP2116578 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2116580 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21165MF_0127973 .
?templateMotifSequenceMatchRegionP2116578 faldo:begin ?templateMotifSequenceMatchBeginP2116579 .
?templateMotifSequenceMatchBeginP2116579 faldo:position ?templateMotifSequenceMatchBeginPositionP2116574 ;
faldo:reference isoform:P21165-1 .
?templateMotifSequenceProfileAlignmentOperationP2116580 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127984 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21165MF_0127975 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127983 .
?targetMotifMatchRegionMatchBeginMF_0127983 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127976 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127984 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21165MF_0127973, 1, (STRLEN(?templateMotifCigarP21165MF_0127973) - STRLEN(REPLACE(?templateMotifCigarP21165MF_0127973, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionP2116574) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21165MF_0127975, 1, (STRLEN(?targetMotifMatchCigarP21165MF_0127975) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_0127975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21165MF_0127975, 1, (STRLEN(?targetMotifMatchCigarP21165MF_0127975) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_0127975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0127976) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP2116593 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2116595 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21165MF_0127988 .
?templateMotifSequenceMatchRegionP2116593 faldo:begin ?templateMotifSequenceMatchBeginP2116594 .
?templateMotifSequenceMatchBeginP2116594 faldo:position ?templateMotifSequenceMatchBeginPositionP2116589 ;
faldo:reference isoform:P21165-1 .
?templateMotifSequenceProfileAlignmentOperationP2116595 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127999 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21165MF_0127990 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127998 .
?targetMotifMatchRegionMatchBeginMF_0127998 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127991 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127999 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21165MF_0127988, 1, (STRLEN(?templateMotifCigarP21165MF_0127988) - STRLEN(REPLACE(?templateMotifCigarP21165MF_0127988, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionP2116589) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21165MF_0127990, 1, (STRLEN(?targetMotifMatchCigarP21165MF_0127990) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_0127990, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21165MF_0127990, 1, (STRLEN(?targetMotifMatchCigarP21165MF_0127990) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_0127990, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0127991) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionP21165108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP21165110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21165MF_01279103 .
?templateMotifSequenceMatchRegionP21165108 faldo:begin ?templateMotifSequenceMatchBeginP21165109 .
?templateMotifSequenceMatchBeginP21165109 faldo:position ?templateMotifSequenceMatchBeginPositionP21165104 ;
faldo:reference isoform:P21165-1 .
?templateMotifSequenceProfileAlignmentOperationP21165110 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01279114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21165MF_01279105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01279113 .
?targetMotifMatchRegionMatchBeginMF_01279113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01279106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01279114 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21165MF_01279103, 1, (STRLEN(?templateMotifCigarP21165MF_01279103) - STRLEN(REPLACE(?templateMotifCigarP21165MF_01279103, CONCAT('^(?:-*[^-]){', STR(((339 - ?templateMotifSequenceMatchBeginPositionP21165104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21165MF_01279105, 1, (STRLEN(?targetMotifMatchCigarP21165MF_01279105) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_01279105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21165MF_01279105, 1, (STRLEN(?targetMotifMatchCigarP21165MF_01279105) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_01279105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01279106) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP21165123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP21165125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21165MF_01279118 .
?templateMotifSequenceMatchRegionP21165123 faldo:begin ?templateMotifSequenceMatchBeginP21165124 .
?templateMotifSequenceMatchBeginP21165124 faldo:position ?templateMotifSequenceMatchBeginPositionP21165119 ;
faldo:reference isoform:P21165-1 .
?templateMotifSequenceProfileAlignmentOperationP21165125 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01279129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21165MF_01279120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01279128 .
?targetMotifMatchRegionMatchBeginMF_01279128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01279121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01279129 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21165MF_01279118, 1, (STRLEN(?templateMotifCigarP21165MF_01279118) - STRLEN(REPLACE(?templateMotifCigarP21165MF_01279118, CONCAT('^(?:-*[^-]){', STR(((384 - ?templateMotifSequenceMatchBeginPositionP21165119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21165MF_01279120, 1, (STRLEN(?targetMotifMatchCigarP21165MF_01279120) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_01279120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21165MF_01279120, 1, (STRLEN(?targetMotifMatchCigarP21165MF_01279120) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_01279120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01279121) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionP21165138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP21165140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21165MF_01279133 .
?templateMotifSequenceMatchRegionP21165138 faldo:begin ?templateMotifSequenceMatchBeginP21165139 .
?templateMotifSequenceMatchBeginP21165139 faldo:position ?templateMotifSequenceMatchBeginPositionP21165134 ;
faldo:reference isoform:P21165-1 .
?templateMotifSequenceProfileAlignmentOperationP21165140 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01279144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21165MF_01279135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01279143 .
?targetMotifMatchRegionMatchBeginMF_01279143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01279136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01279144 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21165MF_01279133, 1, (STRLEN(?templateMotifCigarP21165MF_01279133) - STRLEN(REPLACE(?templateMotifCigarP21165MF_01279133, CONCAT('^(?:-*[^-]){', STR(((423 - ?templateMotifSequenceMatchBeginPositionP21165134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21165MF_01279135, 1, (STRLEN(?targetMotifMatchCigarP21165MF_01279135) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_01279135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21165MF_01279135, 1, (STRLEN(?targetMotifMatchCigarP21165MF_01279135) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_01279135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_01279136) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP21165153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP21165155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21165MF_01279148 .
?templateMotifSequenceMatchRegionP21165153 faldo:begin ?templateMotifSequenceMatchBeginP21165154 .
?templateMotifSequenceMatchBeginP21165154 faldo:position ?templateMotifSequenceMatchBeginPositionP21165149 ;
faldo:reference isoform:P21165-1 .
?templateMotifSequenceProfileAlignmentOperationP21165155 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01279159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21165MF_01279150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01279158 .
?targetMotifMatchRegionMatchBeginMF_01279158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01279151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01279159 edam:has_input signature:MF_01279 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21165MF_01279148, 1, (STRLEN(?templateMotifCigarP21165MF_01279148) - STRLEN(REPLACE(?templateMotifCigarP21165MF_01279148, CONCAT('^(?:-*[^-]){', STR(((423 - ?templateMotifSequenceMatchBeginPositionP21165149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21165MF_01279150, 1, (STRLEN(?targetMotifMatchCigarP21165MF_01279150) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_01279150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21165MF_01279150, 1, (STRLEN(?targetMotifMatchCigarP21165MF_01279150) - STRLEN(REPLACE(?targetMotifMatchCigarP21165MF_01279150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_01279151) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01279a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
}
"xsd:string |
