| http://purl.uniprot.org/unirules/MF_01294#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:464217 up:source unirule:MF_01294 .
_:464218 up:source unirule:MF_01294 .
_:464219 up:source unirule:MF_01294 .
_:464220 up:source unirule:MF_01294 .
_:464221 up:source unirule:MF_01294 .
_:464222 up:source unirule:MF_01294 .
_:464223 up:source unirule:MF_01294 .
_:464224 up:source unirule:MF_01294 .
_:464225 up:source unirule:MF_01294 .
_:464226 up:source unirule:MF_01294 .
_:464227 up:source unirule:MF_01294 .
_:464228 up:source unirule:MF_01294 .
_:464229 up:source unirule:MF_01294 .
_:464230 up:source unirule:MF_01294 .
_:464231 up:source unirule:MF_01294 .
_:464232 up:source unirule:MF_01294 .
_:464233 up:source unirule:MF_01294 .
_:464234 up:source unirule:MF_01294 .
_:464235 up:source unirule:MF_01294 .
_:464236 up:source unirule:MF_01294 .
_:464237 up:source unirule:MF_01294 .
_:464238 up:source unirule:MF_01294 .
_:464239 up:source unirule:MF_01294 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0009025 ,
GO:2001059 ,
keyword:298 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.2.40' ;
up:fullName 'D-tagatose-1,6-bisphosphate aldolase subunit GatY' ;
up:shortName 'TBPA' ,
'TagBP aldolase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'D-tagatose-bisphosphate aldolase class II' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Tagatose-bisphosphate aldolase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'gatY' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalytic subunit of the tagatose-1,6-bisphosphate aldolase GatYZ, which catalyzes the reversible aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to produce tagatose 1,6-bisphosphate (TBP). Requires GatZ subunit for full activity and stability. Is involved in the catabolism of galactitol.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate metabolism; D-tagatose 6-phosphate degradation; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-tagatose 6-phosphate: step 2/2.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Forms a complex with GatZ.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class II fructose-bisphosphate aldolase family. TagBP aldolase GatY subfamily.' .
?case10 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:57642 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:57642 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:57642 .
_:464240 a rdf:Statement ;
up:attribution _:464217 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:464241 a rdf:Statement ;
up:attribution _:464218 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:464242 a rdf:Statement ;
up:attribution _:464219 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:464243 a rdf:Statement ;
up:attribution _:464220 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:464244 a rdf:Statement ;
up:attribution _:464221 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:464245 a rdf:Statement ;
up:attribution _:464222 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:464246 a rdf:Statement ;
up:attribution _:464223 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:464247 a rdf:Statement ;
up:attribution _:464224 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:464248 a rdf:Statement ;
up:attribution _:464225 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:464249 a rdf:Statement ;
up:attribution _:464226 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:298 .
_:464250 a rdf:Statement ;
up:attribution _:464227 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:464251 a rdf:Statement ;
up:attribution _:464228 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009025 .
_:464252 a rdf:Statement ;
up:attribution _:464229 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:2001059 .
_:464253 a rdf:Statement ;
up:attribution _:464230 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:464254 a rdf:Statement ;
up:attribution _:464231 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:464255 a rdf:Statement ;
up:attribution _:464232 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:464256 a rdf:Statement ;
up:source unirule:MF_01294 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:464257 a rdf:Statement ;
up:attribution _:464233 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:464258 a rdf:Statement ;
up:source unirule:MF_01294 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:464259 a rdf:Statement ;
up:attribution _:464234 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:464260 a rdf:Statement ;
up:source unirule:MF_01294 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:464261 a rdf:Statement ;
up:attribution _:464235 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:464262 a rdf:Statement ;
up:source unirule:MF_01294 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:464263 a rdf:Statement ;
up:attribution _:464236 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:464264 a rdf:Statement ;
up:source unirule:MF_01294 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:464265 a rdf:Statement ;
up:attribution _:464237 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:464266 a rdf:Statement ;
up:source unirule:MF_01294 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:464267 a rdf:Statement ;
up:attribution _:464238 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:464268 a rdf:Statement ;
up:source unirule:MF_01294 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:464269 a rdf:Statement ;
up:attribution _:464239 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01294
#Rule MF_01294 Created by:? on:2008-11-05 Modified by:Catherine Rivoire on:2024-05-21
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01294 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01294a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP0C8J662 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C8J664 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C8J6MF_0129457 .
?templateMotifSequenceMatchRegionP0C8J662 faldo:begin ?templateMotifSequenceMatchBeginP0C8J663 .
?templateMotifSequenceMatchBeginP0C8J663 faldo:position ?templateMotifSequenceMatchBeginPositionP0C8J658 ;
faldo:reference isoform:P0C8J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0C8J664 edam:has_input signature:MF_01294 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0129468 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C8J6MF_0129459 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0129467 .
?targetMotifMatchRegionMatchBeginMF_0129467 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0129460 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0129468 edam:has_input signature:MF_01294 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C8J6MF_0129457, 1, (STRLEN(?templateMotifCigarP0C8J6MF_0129457) - STRLEN(REPLACE(?templateMotifCigarP0C8J6MF_0129457, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP0C8J658) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129459, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129459) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129459, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129459) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0129460) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C8J6MF_0129457, 1, (STRLEN(?templateMotifCigarP0C8J6MF_0129457) - STRLEN(REPLACE(?templateMotifCigarP0C8J6MF_0129457, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP0C8J658) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129459, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129459) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129459, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129459) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0129460) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C8J6MF_0129457, 1, (STRLEN(?templateMotifCigarP0C8J6MF_0129457) - STRLEN(REPLACE(?templateMotifCigarP0C8J6MF_0129457, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionP0C8J658) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129459, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129459) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129459, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129459) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0129460) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionP0C8J683 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C8J685 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C8J6MF_0129478 .
?templateMotifSequenceMatchRegionP0C8J683 faldo:begin ?templateMotifSequenceMatchBeginP0C8J684 .
?templateMotifSequenceMatchBeginP0C8J684 faldo:position ?templateMotifSequenceMatchBeginPositionP0C8J679 ;
faldo:reference isoform:P0C8J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0C8J685 edam:has_input signature:MF_01294 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0129489 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C8J6MF_0129480 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0129488 .
?targetMotifMatchRegionMatchBeginMF_0129488 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0129481 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0129489 edam:has_input signature:MF_01294 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C8J6MF_0129478, 1, (STRLEN(?templateMotifCigarP0C8J6MF_0129478) - STRLEN(REPLACE(?templateMotifCigarP0C8J6MF_0129478, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionP0C8J679) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129480, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129480) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129480, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129480, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129480) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129480, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0129481) - 1) AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C8J6MF_0129478, 1, (STRLEN(?templateMotifCigarP0C8J6MF_0129478) - STRLEN(REPLACE(?templateMotifCigarP0C8J6MF_0129478, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP0C8J679) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129480, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129480) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129480, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129480, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129480) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129480, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0129481) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs2t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX]AT', SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP0C8J6100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C8J6102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C8J6MF_0129495 .
?templateMotifSequenceMatchRegionP0C8J6100 faldo:begin ?templateMotifSequenceMatchBeginP0C8J6101 .
?templateMotifSequenceMatchBeginP0C8J6101 faldo:position ?templateMotifSequenceMatchBeginPositionP0C8J696 ;
faldo:reference isoform:P0C8J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0C8J6102 edam:has_input signature:MF_01294 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01294106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C8J6MF_0129497 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01294105 .
?targetMotifMatchRegionMatchBeginMF_01294105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0129498 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01294106 edam:has_input signature:MF_01294 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C8J6MF_0129495, 1, (STRLEN(?templateMotifCigarP0C8J6MF_0129495) - STRLEN(REPLACE(?templateMotifCigarP0C8J6MF_0129495, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP0C8J696) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129497, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129497) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129497, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129497) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0129498) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C8J6MF_0129495, 1, (STRLEN(?templateMotifCigarP0C8J6MF_0129495) - STRLEN(REPLACE(?templateMotifCigarP0C8J6MF_0129495, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionP0C8J696) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129497, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129497) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C8J6MF_0129497, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_0129497) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_0129497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0129498) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn42, (?thisPositionOn43 - ?thisPositionOn42)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP0C8J6117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C8J6119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C8J6MF_01294112 .
?templateMotifSequenceMatchRegionP0C8J6117 faldo:begin ?templateMotifSequenceMatchBeginP0C8J6118 .
?templateMotifSequenceMatchBeginP0C8J6118 faldo:position ?templateMotifSequenceMatchBeginPositionP0C8J6113 ;
faldo:reference isoform:P0C8J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0C8J6119 edam:has_input signature:MF_01294 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01294123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C8J6MF_01294114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01294122 .
?targetMotifMatchRegionMatchBeginMF_01294122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01294115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01294123 edam:has_input signature:MF_01294 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C8J6MF_01294112, 1, (STRLEN(?templateMotifCigarP0C8J6MF_01294112) - STRLEN(REPLACE(?templateMotifCigarP0C8J6MF_01294112, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP0C8J6113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C8J6MF_01294114, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_01294114) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_01294114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C8J6MF_01294114, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_01294114) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_01294114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01294115) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP0C8J6132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C8J6134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C8J6MF_01294127 .
?templateMotifSequenceMatchRegionP0C8J6132 faldo:begin ?templateMotifSequenceMatchBeginP0C8J6133 .
?templateMotifSequenceMatchBeginP0C8J6133 faldo:position ?templateMotifSequenceMatchBeginPositionP0C8J6128 ;
faldo:reference isoform:P0C8J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0C8J6134 edam:has_input signature:MF_01294 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01294138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C8J6MF_01294129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01294137 .
?targetMotifMatchRegionMatchBeginMF_01294137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01294130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01294138 edam:has_input signature:MF_01294 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C8J6MF_01294127, 1, (STRLEN(?templateMotifCigarP0C8J6MF_01294127) - STRLEN(REPLACE(?templateMotifCigarP0C8J6MF_01294127, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP0C8J6128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C8J6MF_01294129, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_01294129) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_01294129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C8J6MF_01294129, 1, (STRLEN(?targetMotifMatchCigarP0C8J6MF_01294129) - STRLEN(REPLACE(?targetMotifMatchCigarP0C8J6MF_01294129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_01294130) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER (REGEX('[GC]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01294a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag142) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag142, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
