| http://purl.uniprot.org/unirules/MF_01418#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:513688 up:source unirule:MF_01418 .
_:513689 up:source unirule:MF_01418 .
_:513690 up:source unirule:MF_01418 .
_:513691 up:source unirule:MF_01418 .
_:513692 up:source unirule:MF_01418 .
_:513693 up:source unirule:MF_01418 .
_:513694 up:source unirule:MF_01418 .
_:513695 up:source unirule:MF_01418 .
_:513696 up:source unirule:MF_01418 .
_:513697 up:source unirule:MF_01418 .
_:513698 up:source unirule:MF_01418 .
_:513699 up:source unirule:MF_01418 .
_:513700 up:source unirule:MF_01418 .
_:513701 up:source unirule:MF_01418 .
_:513702 up:source unirule:MF_01418 .
_:513703 up:source unirule:MF_01418 .
_:513704 up:source unirule:MF_01418 .
_:513705 up:source unirule:MF_01418 .
_:513706 up:source unirule:MF_01418 .
_:513707 up:source unirule:MF_01418 .
_:513708 up:source unirule:MF_01418 .
_:513709 up:source unirule:MF_01418 .
_:513710 up:source unirule:MF_01418 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008295 ,
GO:0008783 ,
GO:0033388 ,
keyword:378 ,
keyword:464 ,
keyword:479 ,
keyword:620 ,
keyword:661 ,
keyword:745 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.3.11' ;
up:fullName 'Agmatinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Agmatine ureohydrolase' ;
up:shortName 'AUH' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'speB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of putrescine from agmatine.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:29035 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine biosynthesis; putrescine biosynthesis via agmatine pathway; putrescine from agmatine: step 1/1.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the arginase family. Agmatinase subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:29035 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29035 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29035 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29035 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:29035 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29035 .
_:513711 a rdf:Statement ;
up:attribution _:513688 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:513712 a rdf:Statement ;
up:attribution _:513689 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:513713 a rdf:Statement ;
up:attribution _:513690 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:513714 a rdf:Statement ;
up:attribution _:513691 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:513715 a rdf:Statement ;
up:attribution _:513692 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:513716 a rdf:Statement ;
up:attribution _:513693 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:513717 a rdf:Statement ;
up:attribution _:513694 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:513718 a rdf:Statement ;
up:attribution _:513695 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:513719 a rdf:Statement ;
up:attribution _:513696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:620 .
_:513720 a rdf:Statement ;
up:attribution _:513697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:745 .
_:513721 a rdf:Statement ;
up:attribution _:513698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:661 .
_:513722 a rdf:Statement ;
up:attribution _:513699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:513723 a rdf:Statement ;
up:attribution _:513700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:513724 a rdf:Statement ;
up:attribution _:513701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:513725 a rdf:Statement ;
up:attribution _:513702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008783 .
_:513726 a rdf:Statement ;
up:attribution _:513703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033388 .
_:513727 a rdf:Statement ;
up:attribution _:513704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008295 .
_:513728 a rdf:Statement ;
up:source unirule:MF_01418 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:513729 a rdf:Statement ;
up:attribution _:513705 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:513730 a rdf:Statement ;
up:source unirule:MF_01418 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:513731 a rdf:Statement ;
up:attribution _:513706 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:513732 a rdf:Statement ;
up:source unirule:MF_01418 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:513733 a rdf:Statement ;
up:attribution _:513707 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:513734 a rdf:Statement ;
up:source unirule:MF_01418 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:513735 a rdf:Statement ;
up:attribution _:513708 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:513736 a rdf:Statement ;
up:source unirule:MF_01418 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:513737 a rdf:Statement ;
up:attribution _:513709 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:513738 a rdf:Statement ;
up:source unirule:MF_01418 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:513739 a rdf:Statement ;
up:attribution _:513710 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01418
#Rule MF_01418 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon51 {taxon:206351 taxon:91347}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01418 .
?thisOrganism rdfs:subClassOf+ ?supertaxon51 .
BIND(URI(CONCAT(STR(?this), '#MF_01418a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionP6065157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6065159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60651MF_0141852 .
?templateMotifSequenceMatchRegionP6065157 faldo:begin ?templateMotifSequenceMatchBeginP6065158 .
?templateMotifSequenceMatchBeginP6065158 faldo:position ?templateMotifSequenceMatchBeginPositionP6065153 ;
faldo:reference isoform:P60651-1 .
?templateMotifSequenceProfileAlignmentOperationP6065159 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0141863 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60651MF_0141854 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0141862 .
?targetMotifMatchRegionMatchBeginMF_0141862 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0141855 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0141863 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60651MF_0141852, 1, (STRLEN(?templateMotifCigarP60651MF_0141852) - STRLEN(REPLACE(?templateMotifCigarP60651MF_0141852, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP6065153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60651MF_0141854, 1, (STRLEN(?targetMotifMatchCigarP60651MF_0141854) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_0141854, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60651MF_0141854, 1, (STRLEN(?targetMotifMatchCigarP60651MF_0141854) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_0141854, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0141855) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP6065172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6065174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60651MF_0141867 .
?templateMotifSequenceMatchRegionP6065172 faldo:begin ?templateMotifSequenceMatchBeginP6065173 .
?templateMotifSequenceMatchBeginP6065173 faldo:position ?templateMotifSequenceMatchBeginPositionP6065168 ;
faldo:reference isoform:P60651-1 .
?templateMotifSequenceProfileAlignmentOperationP6065174 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0141878 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60651MF_0141869 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0141877 .
?targetMotifMatchRegionMatchBeginMF_0141877 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0141870 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0141878 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60651MF_0141867, 1, (STRLEN(?templateMotifCigarP60651MF_0141867) - STRLEN(REPLACE(?templateMotifCigarP60651MF_0141867, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionP6065168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60651MF_0141869, 1, (STRLEN(?targetMotifMatchCigarP60651MF_0141869) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_0141869, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60651MF_0141869, 1, (STRLEN(?targetMotifMatchCigarP60651MF_0141869) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_0141869, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0141870) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP6065187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6065189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60651MF_0141882 .
?templateMotifSequenceMatchRegionP6065187 faldo:begin ?templateMotifSequenceMatchBeginP6065188 .
?templateMotifSequenceMatchBeginP6065188 faldo:position ?templateMotifSequenceMatchBeginPositionP6065183 ;
faldo:reference isoform:P60651-1 .
?templateMotifSequenceProfileAlignmentOperationP6065189 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0141893 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60651MF_0141884 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0141892 .
?targetMotifMatchRegionMatchBeginMF_0141892 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0141885 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0141893 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60651MF_0141882, 1, (STRLEN(?templateMotifCigarP60651MF_0141882) - STRLEN(REPLACE(?templateMotifCigarP60651MF_0141882, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP6065183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60651MF_0141884, 1, (STRLEN(?targetMotifMatchCigarP60651MF_0141884) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_0141884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60651MF_0141884, 1, (STRLEN(?targetMotifMatchCigarP60651MF_0141884) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_0141884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0141885) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionP60651102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP60651104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60651MF_0141897 .
?templateMotifSequenceMatchRegionP60651102 faldo:begin ?templateMotifSequenceMatchBeginP60651103 .
?templateMotifSequenceMatchBeginP60651103 faldo:position ?templateMotifSequenceMatchBeginPositionP6065198 ;
faldo:reference isoform:P60651-1 .
?templateMotifSequenceProfileAlignmentOperationP60651104 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01418108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60651MF_0141899 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01418107 .
?targetMotifMatchRegionMatchBeginMF_01418107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01418100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01418108 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60651MF_0141897, 1, (STRLEN(?templateMotifCigarP60651MF_0141897) - STRLEN(REPLACE(?templateMotifCigarP60651MF_0141897, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP6065198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60651MF_0141899, 1, (STRLEN(?targetMotifMatchCigarP60651MF_0141899) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_0141899, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60651MF_0141899, 1, (STRLEN(?targetMotifMatchCigarP60651MF_0141899) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_0141899, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_01418100) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP60651117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP60651119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60651MF_01418112 .
?templateMotifSequenceMatchRegionP60651117 faldo:begin ?templateMotifSequenceMatchBeginP60651118 .
?templateMotifSequenceMatchBeginP60651118 faldo:position ?templateMotifSequenceMatchBeginPositionP60651113 ;
faldo:reference isoform:P60651-1 .
?templateMotifSequenceProfileAlignmentOperationP60651119 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01418123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60651MF_01418114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01418122 .
?targetMotifMatchRegionMatchBeginMF_01418122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01418115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01418123 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60651MF_01418112, 1, (STRLEN(?templateMotifCigarP60651MF_01418112) - STRLEN(REPLACE(?templateMotifCigarP60651MF_01418112, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionP60651113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60651MF_01418114, 1, (STRLEN(?targetMotifMatchCigarP60651MF_01418114) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_01418114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60651MF_01418114, 1, (STRLEN(?targetMotifMatchCigarP60651MF_01418114) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_01418114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01418115) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP60651132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP60651134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60651MF_01418127 .
?templateMotifSequenceMatchRegionP60651132 faldo:begin ?templateMotifSequenceMatchBeginP60651133 .
?templateMotifSequenceMatchBeginP60651133 faldo:position ?templateMotifSequenceMatchBeginPositionP60651128 ;
faldo:reference isoform:P60651-1 .
?templateMotifSequenceProfileAlignmentOperationP60651134 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01418138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60651MF_01418129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01418137 .
?targetMotifMatchRegionMatchBeginMF_01418137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01418130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01418138 edam:has_input signature:MF_01418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60651MF_01418127, 1, (STRLEN(?templateMotifCigarP60651MF_01418127) - STRLEN(REPLACE(?templateMotifCigarP60651MF_01418127, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP60651128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60651MF_01418129, 1, (STRLEN(?targetMotifMatchCigarP60651MF_01418129) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_01418129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60651MF_01418129, 1, (STRLEN(?targetMotifMatchCigarP60651MF_01418129) - STRLEN(REPLACE(?targetMotifMatchCigarP60651MF_01418129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_01418130) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01418a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
}
"xsd:string |
