| http://purl.uniprot.org/unirules/MF_01441#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:521601 up:source unirule:MF_01441 .
_:521602 up:source unirule:MF_01441 .
_:521603 up:source unirule:MF_01441 .
_:521604 up:source unirule:MF_01441 .
_:521605 up:source unirule:MF_01441 .
_:521606 up:source unirule:MF_01441 .
_:521607 up:source unirule:MF_01441 .
_:521608 up:source unirule:MF_01441 .
_:521609 up:source unirule:MF_01441 .
_:521610 up:source unirule:MF_01441 .
_:521611 up:source unirule:MF_01441 .
_:521612 up:source unirule:MF_01441 .
_:521613 up:source unirule:MF_01441 .
_:521614 up:source unirule:MF_01441 .
_:521615 up:source unirule:MF_01441 .
_:521616 up:source unirule:MF_01441 .
_:521617 up:source unirule:MF_01441 .
_:521618 up:source unirule:MF_01441 .
_:521619 up:source unirule:MF_01441 .
_:521620 up:source unirule:MF_01441 .
_:521621 up:source unirule:MF_01441 .
_:521622 up:source unirule:MF_01441 .
_:521623 up:source unirule:MF_01441 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0003677 ,
GO:0005737 ,
GO:0008199 ,
GO:0016491 ,
keyword:226 ,
keyword:238 ,
keyword:408 ,
keyword:409 ,
keyword:479 ,
keyword:560 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.16.-.-' ;
up:fullName 'DNA protection during starvation protein' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dps' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homododecamer. The 12 subunits form a hollow sphere into which the mineral iron core of up to 500 Fe(3+) can be deposited.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Dps family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:24875 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:24875 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:24875 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:24875 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:24875 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:24875 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:24875 .
_:521624 a rdf:Statement ;
up:attribution _:521601 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:521625 a rdf:Statement ;
up:attribution _:521602 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:521626 a rdf:Statement ;
up:attribution _:521603 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:521627 a rdf:Statement ;
up:attribution _:521604 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:521628 a rdf:Statement ;
up:attribution _:521605 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:521629 a rdf:Statement ;
up:attribution _:521606 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:521630 a rdf:Statement ;
up:attribution _:521607 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:226 .
_:521631 a rdf:Statement ;
up:attribution _:521608 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:521632 a rdf:Statement ;
up:attribution _:521609 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:521633 a rdf:Statement ;
up:attribution _:521610 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:409 .
_:521634 a rdf:Statement ;
up:attribution _:521611 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:521635 a rdf:Statement ;
up:attribution _:521612 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:521636 a rdf:Statement ;
up:attribution _:521613 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008199 .
_:521637 a rdf:Statement ;
up:attribution _:521614 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:521638 a rdf:Statement ;
up:attribution _:521615 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016491 .
_:521639 a rdf:Statement ;
up:attribution _:521616 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:521640 a rdf:Statement ;
up:source unirule:MF_01441 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:521641 a rdf:Statement ;
up:attribution _:521617 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:521642 a rdf:Statement ;
up:source unirule:MF_01441 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:521643 a rdf:Statement ;
up:attribution _:521618 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:521644 a rdf:Statement ;
up:source unirule:MF_01441 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:521645 a rdf:Statement ;
up:attribution _:521619 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:521646 a rdf:Statement ;
up:source unirule:MF_01441 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:521647 a rdf:Statement ;
up:attribution _:521620 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:521648 a rdf:Statement ;
up:source unirule:MF_01441 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:521649 a rdf:Statement ;
up:attribution _:521621 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:521650 a rdf:Statement ;
up:source unirule:MF_01441 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:521651 a rdf:Statement ;
up:attribution _:521622 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:521652 a rdf:Statement ;
up:source unirule:MF_01441 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:521653 a rdf:Statement ;
up:attribution _:521623 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01441
#Rule MF_01441 Created by:? on:2006-11-27 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01441 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01441a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01441a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01441a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01441a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionP0ABT263 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT265 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT2MF_0144158 .
?templateMotifSequenceMatchRegionP0ABT263 faldo:begin ?templateMotifSequenceMatchBeginP0ABT264 .
?templateMotifSequenceMatchBeginP0ABT264 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT259 ;
faldo:reference isoform:P0ABT2-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT265 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0144169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT2MF_0144160 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0144168 .
?targetMotifMatchRegionMatchBeginMF_0144168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0144161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0144169 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon57 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon57 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT2MF_0144158, 1, (STRLEN(?templateMotifCigarP0ABT2MF_0144158) - STRLEN(REPLACE(?templateMotifCigarP0ABT2MF_0144158, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP0ABT259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT2MF_0144160, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_0144160) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_0144160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT2MF_0144160, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_0144160) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_0144160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0144161) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01441a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionP0ABT279 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT281 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT2MF_0144174 .
?templateMotifSequenceMatchRegionP0ABT279 faldo:begin ?templateMotifSequenceMatchBeginP0ABT280 .
?templateMotifSequenceMatchBeginP0ABT280 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT275 ;
faldo:reference isoform:P0ABT2-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT281 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0144185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT2MF_0144176 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0144184 .
?targetMotifMatchRegionMatchBeginMF_0144184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0144177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0144185 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon73 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon73 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT2MF_0144174, 1, (STRLEN(?templateMotifCigarP0ABT2MF_0144174) - STRLEN(REPLACE(?templateMotifCigarP0ABT2MF_0144174, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP0ABT275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT2MF_0144176, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_0144176) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_0144176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT2MF_0144176, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_0144176) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_0144176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0144177) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01441a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP0ABT295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT2MF_0144190 .
?templateMotifSequenceMatchRegionP0ABT295 faldo:begin ?templateMotifSequenceMatchBeginP0ABT296 .
?templateMotifSequenceMatchBeginP0ABT296 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT291 ;
faldo:reference isoform:P0ABT2-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT297 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01441101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT2MF_0144192 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01441100 .
?targetMotifMatchRegionMatchBeginMF_01441100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0144193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01441101 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon89 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon89 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT2MF_0144190, 1, (STRLEN(?templateMotifCigarP0ABT2MF_0144190) - STRLEN(REPLACE(?templateMotifCigarP0ABT2MF_0144190, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP0ABT291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT2MF_0144192, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_0144192) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_0144192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT2MF_0144192, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_0144192) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_0144192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0144193) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01441a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionP0ABT2111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT2113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT2MF_01441106 .
?templateMotifSequenceMatchRegionP0ABT2111 faldo:begin ?templateMotifSequenceMatchBeginP0ABT2112 .
?templateMotifSequenceMatchBeginP0ABT2112 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT2107 ;
faldo:reference isoform:P0ABT2-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT2113 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01441117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT2MF_01441108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01441116 .
?targetMotifMatchRegionMatchBeginMF_01441116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01441109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01441117 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon105 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon105 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT2MF_01441106, 1, (STRLEN(?templateMotifCigarP0ABT2MF_01441106) - STRLEN(REPLACE(?templateMotifCigarP0ABT2MF_01441106, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP0ABT2107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT2MF_01441108, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_01441108) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_01441108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT2MF_01441108, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_01441108) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_01441108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01441109) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01441a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP0ABT2127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT2129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT2MF_01441122 .
?templateMotifSequenceMatchRegionP0ABT2127 faldo:begin ?templateMotifSequenceMatchBeginP0ABT2128 .
?templateMotifSequenceMatchBeginP0ABT2128 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT2123 ;
faldo:reference isoform:P0ABT2-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT2129 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01441133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT2MF_01441124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01441132 .
?targetMotifMatchRegionMatchBeginMF_01441132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01441125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01441133 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon121 {taxon:561 taxon:620}
?thisOrganism rdfs:subClassOf+ ?supertaxon121 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT2MF_01441122, 1, (STRLEN(?templateMotifCigarP0ABT2MF_01441122) - STRLEN(REPLACE(?templateMotifCigarP0ABT2MF_01441122, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP0ABT2123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT2MF_01441124, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_01441124) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_01441124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT2MF_01441124, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_01441124) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_01441124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_01441125) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01441a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP0ABT2143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT2145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT2MF_01441138 .
?templateMotifSequenceMatchRegionP0ABT2143 faldo:begin ?templateMotifSequenceMatchBeginP0ABT2144 .
?templateMotifSequenceMatchBeginP0ABT2144 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT2139 ;
faldo:reference isoform:P0ABT2-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT2145 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01441149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT2MF_01441140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01441148 .
?targetMotifMatchRegionMatchBeginMF_01441148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01441141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01441149 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon137 {taxon:561 taxon:620}
?thisOrganism rdfs:subClassOf+ ?supertaxon137 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT2MF_01441138, 1, (STRLEN(?templateMotifCigarP0ABT2MF_01441138) - STRLEN(REPLACE(?templateMotifCigarP0ABT2MF_01441138, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP0ABT2139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT2MF_01441140, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_01441140) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_01441140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT2MF_01441140, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_01441140) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_01441140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01441141) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01441a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP0ABT2159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT2161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT2MF_01441154 .
?templateMotifSequenceMatchRegionP0ABT2159 faldo:begin ?templateMotifSequenceMatchBeginP0ABT2160 .
?templateMotifSequenceMatchBeginP0ABT2160 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT2155 ;
faldo:reference isoform:P0ABT2-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT2161 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01441165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT2MF_01441156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01441164 .
?targetMotifMatchRegionMatchBeginMF_01441164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01441157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01441165 edam:has_input signature:MF_01441 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon153 {taxon:561 taxon:620}
?thisOrganism rdfs:subClassOf+ ?supertaxon153 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT2MF_01441154, 1, (STRLEN(?templateMotifCigarP0ABT2MF_01441154) - STRLEN(REPLACE(?templateMotifCigarP0ABT2MF_01441154, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP0ABT2155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT2MF_01441156, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_01441156) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_01441156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT2MF_01441156, 1, (STRLEN(?targetMotifMatchCigarP0ABT2MF_01441156) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT2MF_01441156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_01441157) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01441a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon169 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon169 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon170 {taxon:561 taxon:620}
?thisOrganism rdfs:subClassOf+ ?supertaxon170 .
})) .
BIND(?this AS ?case7) .
}
}
"xsd:string |
