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http://purl.uniprot.org/unirules/MF_01452#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:526077 up:source unirule:MF_01452 . _:526078 up:source unirule:MF_01452 . _:526079 up:source unirule:MF_01452 . _:526080 up:source unirule:MF_01452 . _:526081 up:source unirule:MF_01452 . _:526082 up:source unirule:MF_01452 . _:526083 up:source unirule:MF_01452 . _:526084 up:source unirule:MF_01452 . _:526085 up:source unirule:MF_01452 . _:526086 up:source unirule:MF_01452 . _:526087 up:source unirule:MF_01452 . _:526088 up:source unirule:MF_01452 . _:526089 up:source unirule:MF_01452 . _:526090 up:source unirule:MF_01452 . _:526091 up:source unirule:MF_01452 . _:526092 up:source unirule:MF_01452 . _:526093 up:source unirule:MF_01452 . _:526094 up:source unirule:MF_01452 . _:526095 up:source unirule:MF_01452 . _:526096 up:source unirule:MF_01452 . _:526097 up:source unirule:MF_01452 . _:526098 up:source unirule:MF_01452 . _:526099 up:source unirule:MF_01452 . _:526100 up:source unirule:MF_01452 . _:526101 up:source unirule:MF_01452 . _:526102 up:source unirule:MF_01452 . _:526103 up:source unirule:MF_01452 . _:526104 up:source unirule:MF_01452 . _:526105 up:source unirule:MF_01452 . _:526106 up:source unirule:MF_01452 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0000724 , GO:0003690 , GO:0005524 , GO:0008409 , keyword:227 , keyword:234 , keyword:238 , keyword:269 , keyword:347 , keyword:378 , keyword:540 , keyword:547 , keyword:67 ; up:recommendedName ?name0 . ?name0 up:ecName '3.1.-.-' ; up:fullName 'ATP-dependent helicase/deoxyribonuclease subunit B' ; rdf:type up:Structured_Name . ?name1 up:fullName 'ATP-dependent helicase/nuclease subunit AddB' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'addB' . ?annotation3 a up:Function_Annotation ; rdfs:comment "The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddB subunit has 5' -> 3' nuclease activity but not helicase activity." . ?annotation4 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation5 a up:Subunit_Annotation ; rdfs:comment 'Heterodimer of AddA and AddB.' . ?annotation6 a up:Annotation ; rdfs:comment 'Despite having conserved helicase domains, this subunit does not have helicase activity.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the helicase family. AddB/RexB type 1 subfamily.' . ?case8 up:classifiedWith GO:0051536 , keyword:408 , keyword:411 , keyword:479 , keyword:4 . ?pfs9 up:annotation ?annotation10 , ?annotation16 , ?annotation22 , ?annotation28 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:49883 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:49883 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:49883 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:49883 . _:526107 a rdf:Statement ; up:attribution _:526077 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:526108 a rdf:Statement ; up:attribution _:526078 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:526109 a rdf:Statement ; up:attribution _:526079 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:526110 a rdf:Statement ; up:attribution _:526080 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:526111 a rdf:Statement ; up:attribution _:526081 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:526112 a rdf:Statement ; up:attribution _:526082 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:526113 a rdf:Statement ; up:attribution _:526083 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:526114 a rdf:Statement ; up:attribution _:526084 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:526115 a rdf:Statement ; up:attribution _:526085 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:526116 a rdf:Statement ; up:attribution _:526086 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:526117 a rdf:Statement ; up:attribution _:526087 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:526118 a rdf:Statement ; up:attribution _:526088 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:526119 a rdf:Statement ; up:attribution _:526089 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:269 . _:526120 a rdf:Statement ; up:attribution _:526090 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:347 . _:526121 a rdf:Statement ; up:attribution _:526091 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:526122 a rdf:Statement ; up:attribution _:526092 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:526123 a rdf:Statement ; up:attribution _:526093 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:526124 a rdf:Statement ; up:attribution _:526094 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:526125 a rdf:Statement ; up:attribution _:526095 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008409 . _:526126 a rdf:Statement ; up:attribution _:526096 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003690 . _:526127 a rdf:Statement ; up:attribution _:526097 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000724 . _:526128 a rdf:Statement ; up:attribution _:526098 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:4 . _:526129 a rdf:Statement ; up:attribution _:526099 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:526130 a rdf:Statement ; up:attribution _:526100 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:526131 a rdf:Statement ; up:attribution _:526101 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:526132 a rdf:Statement ; up:attribution _:526102 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object GO:0051536 . _:526133 a rdf:Statement ; up:source unirule:MF_01452 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:526134 a rdf:Statement ; up:attribution _:526103 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:526135 a rdf:Statement ; up:source unirule:MF_01452 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:526136 a rdf:Statement ; up:attribution _:526104 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:526137 a rdf:Statement ; up:source unirule:MF_01452 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:526138 a rdf:Statement ; up:attribution _:526105 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:526139 a rdf:Statement ; up:source unirule:MF_01452 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:526140 a rdf:Statement ; up:attribution _:526106 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01452 #Rule MF_01452 Created by:? on:2009-06-04 Modified by:Andrea Auchincloss on:2023-11-10 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01452 . ?thisOrganism rdfs:subClassOf+ taxon:1239 . BIND(URI(CONCAT(STR(?this), '#MF_01452a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01452a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01452a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01452a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01452a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01452a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01452a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch38 faldo:location ?templateMotifSequenceMatchRegionP2347739 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2347741 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23477MF_0145234 . ?templateMotifSequenceMatchRegionP2347739 faldo:begin ?templateMotifSequenceMatchBeginP2347740 . ?templateMotifSequenceMatchBeginP2347740 faldo:position ?templateMotifSequenceMatchBeginPositionP2347735 ; faldo:reference isoform:P23477-1 . ?templateMotifSequenceProfileAlignmentOperationP2347741 edam:has_input signature:MF_01452 ; rdf:type edam:operation_0300 . ?targetMotifMatch42 faldo:location ?targetMotifMatchRegionMatch43 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0145245 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23477MF_0145236 . ?targetMotifMatchRegionMatch43 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0145244 . ?targetMotifMatchRegionMatchBeginMF_0145244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0145237 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0145245 edam:has_input signature:MF_01452 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23477MF_0145234, 1, (STRLEN(?templateMotifCigarP23477MF_0145234) - STRLEN(REPLACE(?templateMotifCigarP23477MF_0145234, CONCAT('^(?:-*[^-]){', STR(((801 - ?templateMotifSequenceMatchBeginPositionP2347735) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23477MF_0145236, 1, (STRLEN(?targetMotifMatchCigarP23477MF_0145236) - STRLEN(REPLACE(?targetMotifMatchCigarP23477MF_0145236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23477MF_0145236, 1, (STRLEN(?targetMotifMatchCigarP23477MF_0145236) - STRLEN(REPLACE(?targetMotifMatchCigarP23477MF_0145236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) . BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0145237) - 1) AS ?thisPositionOn14) . BIND(?thisPositionOn14 AS ?thisPositionOn15) . BIND(?this AS ?pfs1t48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23477MF_0145234, 1, (STRLEN(?templateMotifCigarP23477MF_0145234) - STRLEN(REPLACE(?templateMotifCigarP23477MF_0145234, CONCAT('^(?:-*[^-]){', STR(((1121 - ?templateMotifSequenceMatchBeginPositionP2347735) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23477MF_0145236, 1, (STRLEN(?targetMotifMatchCigarP23477MF_0145236) - STRLEN(REPLACE(?targetMotifMatchCigarP23477MF_0145236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23477MF_0145236, 1, (STRLEN(?targetMotifMatchCigarP23477MF_0145236) - STRLEN(REPLACE(?targetMotifMatchCigarP23477MF_0145236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0145237) - 1) AS ?thisPositionOn20) . BIND(?thisPositionOn20 AS ?thisPositionOn21) . BIND(?this AS ?pfs1t51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23477MF_0145234, 1, (STRLEN(?templateMotifCigarP23477MF_0145234) - STRLEN(REPLACE(?templateMotifCigarP23477MF_0145234, CONCAT('^(?:-*[^-]){', STR(((1124 - ?templateMotifSequenceMatchBeginPositionP2347735) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23477MF_0145236, 1, (STRLEN(?targetMotifMatchCigarP23477MF_0145236) - STRLEN(REPLACE(?targetMotifMatchCigarP23477MF_0145236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23477MF_0145236, 1, (STRLEN(?targetMotifMatchCigarP23477MF_0145236) - STRLEN(REPLACE(?targetMotifMatchCigarP23477MF_0145236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) . BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0145237) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23477MF_0145234, 1, (STRLEN(?templateMotifCigarP23477MF_0145234) - STRLEN(REPLACE(?templateMotifCigarP23477MF_0145234, CONCAT('^(?:-*[^-]){', STR(((1130 - ?templateMotifSequenceMatchBeginPositionP2347735) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23477MF_0145236, 1, (STRLEN(?targetMotifMatchCigarP23477MF_0145236) - STRLEN(REPLACE(?targetMotifMatchCigarP23477MF_0145236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23477MF_0145236, 1, (STRLEN(?targetMotifMatchCigarP23477MF_0145236) - STRLEN(REPLACE(?targetMotifMatchCigarP23477MF_0145236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) . BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0145237) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs1t57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag58) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag58, ?UNBOUND_VARIABLE) AS ?case8) . } "xsd:string
http://purl.uniprot.org/unirules/MF_01452http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_01452#construct
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