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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_01495#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01495#construct-template-132 |
| http://purl.uniprot.org/unirules/MF_01495#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01495#construct-template-133 |
| http://purl.uniprot.org/unirules/MF_01495#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01495#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01495#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01495#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01495#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01495#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:542573 up:source unirule:MF_01495 . _:542574 up:source unirule:MF_01495 . _:542575 up:source unirule:MF_01495 . _:542576 up:source unirule:MF_01495 . _:542577 up:source unirule:MF_01495 . _:542578 up:source unirule:MF_01495 . _:542579 up:source unirule:MF_01495 . _:542580 up:source unirule:MF_01495 . _:542581 up:source unirule:MF_01495 . _:542582 up:source unirule:MF_01495 . _:542583 up:source unirule:MF_01495 . _:542584 up:source unirule:MF_01495 . _:542585 up:source unirule:MF_01495 . _:542586 up:source unirule:MF_01495 . _:542587 up:source unirule:MF_01495 . _:542588 up:source unirule:MF_01495 . _:542589 up:source unirule:MF_01495 . _:542590 up:source unirule:MF_01495 . _:542591 up:source unirule:MF_01495 . _:542592 up:source unirule:MF_01495 . _:542593 up:source unirule:MF_01495 . _:542594 up:source unirule:MF_01495 . _:542595 up:source unirule:MF_01495 . _:542596 up:source unirule:MF_01495 . _:542597 up:source unirule:MF_01495 . _:542598 up:source unirule:MF_01495 . _:542599 up:source unirule:MF_01495 . _:542600 up:source unirule:MF_01495 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0015979 , GO:0016168 , keyword:1133 , keyword:148 , keyword:157 , keyword:472 , keyword:602 , keyword:604 , keyword:812 ; up:recommendedName ?name0 . ?name0 up:fullName 'Photosystem II CP47 reaction center protein' ; rdf:type up:Structured_Name . ?name1 up:fullName 'PSII 47 kDa protein' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Protein CP-47' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'psbB' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation.' . ?annotation5 a up:Cofactor_Annotation ; rdfs:comment 'Binds multiple chlorophylls. PSII binds additional chlorophylls, carotenoids and specific lipids.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the PsbB/PsbC family. PsbB subfamily.' . ?case7 up:classifiedWith GO:0009535 . ?case8 up:classifiedWith keyword:1003 , keyword:997 . ?case10 up:classifiedWith keyword:793 . ?case12 up:classifiedWith GO:0005886 . ?case13 up:classifiedWith GO:0042651 . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb46 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . _:542601 a rdf:Statement ; up:attribution _:542573 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:542602 a rdf:Statement ; up:attribution _:542574 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:542603 a rdf:Statement ; up:attribution _:542575 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:542604 a rdf:Statement ; up:attribution _:542576 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:542605 a rdf:Statement ; up:attribution _:542577 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:542606 a rdf:Statement ; up:attribution _:542578 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:542607 a rdf:Statement ; up:attribution _:542579 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:542608 a rdf:Statement ; up:attribution _:542580 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:148 . _:542609 a rdf:Statement ; up:attribution _:542581 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:157 . _:542610 a rdf:Statement ; up:attribution _:542582 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:542611 a rdf:Statement ; up:attribution _:542583 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:602 . _:542612 a rdf:Statement ; up:attribution _:542584 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:604 . _:542613 a rdf:Statement ; up:attribution _:542585 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:542614 a rdf:Statement ; up:attribution _:542586 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:542615 a rdf:Statement ; up:attribution _:542587 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016168 . _:542616 a rdf:Statement ; up:attribution _:542588 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015979 . _:542617 a rdf:Statement ; up:attribution _:542589 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009535 . _:542618 a rdf:Statement ; up:attribution _:542590 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:542619 a rdf:Statement ; up:attribution _:542591 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:997 . _:542620 a rdf:Statement ; up:attribution _:542592 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:793 . _:542621 a rdf:Statement ; up:attribution _:542593 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005886 . _:542622 a rdf:Statement ; up:attribution _:542594 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042651 . _:542623 a rdf:Statement ; up:source unirule:MF_01495 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:542624 a rdf:Statement ; up:attribution _:542595 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:542625 a rdf:Statement ; up:source unirule:MF_01495 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:542626 a rdf:Statement ; up:attribution _:542596 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:542627 a rdf:Statement ; up:source unirule:MF_01495 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:542628 a rdf:Statement ; up:attribution _:542597 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:542629 a rdf:Statement ; up:source unirule:MF_01495 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:542630 a rdf:Statement ; up:attribution _:542598 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:542631 a rdf:Statement ; up:source unirule:MF_01495 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:542632 a rdf:Statement ; up:attribution _:542599 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:542633 a rdf:Statement ; up:source unirule:MF_01495 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:542634 a rdf:Statement ; up:attribution _:542600 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01495 #Rule MF_01495 Created by:? on:2014-09-25 Modified by:Andrea Auchincloss on:2023-06-20 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01495 . ?thisOrganism rdfs:subClassOf+ taxon:1117 . } UNION { ?this rdfs:seeAlso signature:MF_01495 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } UNION { ?this up:encodedIn up:Cyanelle . } UNION { ?this up:encodedIn up:Apicoplast . } UNION { ?this up:encodedIn up:Organellar_chromatophore . } UNION { ?this up:encodedIn up:Non-photosynthetic_plastid . } } BIND(URI(CONCAT(STR(?this), '#MF_01495a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01495a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01495a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01495a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01495a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01495a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionD0VWR155 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR157 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarD0VWR1MF_0149550 . ?templateMotifSequenceMatchRegionD0VWR155 faldo:begin ?templateMotifSequenceMatchBeginD0VWR156 . ?templateMotifSequenceMatchBeginD0VWR156 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR151 ; faldo:reference isoform:D0VWR1-1 . ?templateMotifSequenceProfileAlignmentOperationD0VWR157 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . ?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149561 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarD0VWR1MF_0149552 . ?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149560 . ?targetMotifMatchRegionMatchBeginMF_0149560 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149553 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0149561 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_0149550, 1, (STRLEN(?templateMotifCigarD0VWR1MF_0149550) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_0149550, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionD0VWR151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149552, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149552) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149552, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149552, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149552) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149552, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) . BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0149553) - 1) AS ?thisPositionOn18) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_0149550, 1, (STRLEN(?templateMotifCigarD0VWR1MF_0149550) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_0149550, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionD0VWR151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149552, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149552) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149552, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149552, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149552) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149552, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) . BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0149553) - 1) AS ?thisPositionOn19) . BIND(?this AS ?pfs1t66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) . BIND(URI(CONCAT(STR(?this), '#MF_01495a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionD0VWR172 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR174 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarD0VWR1MF_0149567 . ?templateMotifSequenceMatchRegionD0VWR172 faldo:begin ?templateMotifSequenceMatchBeginD0VWR173 . ?templateMotifSequenceMatchBeginD0VWR173 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR168 ; faldo:reference isoform:D0VWR1-1 . ?templateMotifSequenceProfileAlignmentOperationD0VWR174 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . ?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149578 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarD0VWR1MF_0149569 . ?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149577 . ?targetMotifMatchRegionMatchBeginMF_0149577 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149570 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0149578 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_0149567, 1, (STRLEN(?templateMotifCigarD0VWR1MF_0149567) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_0149567, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionD0VWR168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149569, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149569) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149569, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149569) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) . BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0149570) - 1) AS ?thisPositionOn24) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_0149567, 1, (STRLEN(?templateMotifCigarD0VWR1MF_0149567) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_0149567, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionD0VWR168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149569, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149569) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149569, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149569) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) . BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0149570) - 1) AS ?thisPositionOn25) . BIND(?this AS ?pfs1t83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) . BIND(URI(CONCAT(STR(?this), '#MF_01495a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionD0VWR189 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR191 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarD0VWR1MF_0149584 . ?templateMotifSequenceMatchRegionD0VWR189 faldo:begin ?templateMotifSequenceMatchBeginD0VWR190 . ?templateMotifSequenceMatchBeginD0VWR190 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR185 ; faldo:reference isoform:D0VWR1-1 . ?templateMotifSequenceProfileAlignmentOperationD0VWR191 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . ?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149595 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarD0VWR1MF_0149586 . ?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149594 . ?targetMotifMatchRegionMatchBeginMF_0149594 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149587 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0149595 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_0149584, 1, (STRLEN(?templateMotifCigarD0VWR1MF_0149584) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_0149584, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionD0VWR185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149586, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149586) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149586, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149586, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149586) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149586, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0149587) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_0149584, 1, (STRLEN(?templateMotifCigarD0VWR1MF_0149584) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_0149584, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionD0VWR185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149586, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149586) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149586, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_0149586, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_0149586) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_0149586, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) . BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0149587) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs1t100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) . BIND(URI(CONCAT(STR(?this), '#MF_01495a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionD0VWR1106 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR1108 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarD0VWR1MF_01495101 . ?templateMotifSequenceMatchRegionD0VWR1106 faldo:begin ?templateMotifSequenceMatchBeginD0VWR1107 . ?templateMotifSequenceMatchBeginD0VWR1107 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR1102 ; faldo:reference isoform:D0VWR1-1 . ?templateMotifSequenceProfileAlignmentOperationD0VWR1108 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . ?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01495112 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarD0VWR1MF_01495103 . ?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01495111 . ?targetMotifMatchRegionMatchBeginMF_01495111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01495104 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01495112 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_01495101, 1, (STRLEN(?templateMotifCigarD0VWR1MF_01495101) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_01495101, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionD0VWR1102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495103, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495103) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495103, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495103) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01495104) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_01495101, 1, (STRLEN(?templateMotifCigarD0VWR1MF_01495101) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_01495101, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionD0VWR1102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495103, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495103) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495103, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495103) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) . BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01495104) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs1t117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) . BIND(URI(CONCAT(STR(?this), '#MF_01495a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionD0VWR1123 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR1125 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarD0VWR1MF_01495118 . ?templateMotifSequenceMatchRegionD0VWR1123 faldo:begin ?templateMotifSequenceMatchBeginD0VWR1124 . ?templateMotifSequenceMatchBeginD0VWR1124 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR1119 ; faldo:reference isoform:D0VWR1-1 . ?templateMotifSequenceProfileAlignmentOperationD0VWR1125 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . ?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01495129 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarD0VWR1MF_01495120 . ?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01495128 . ?targetMotifMatchRegionMatchBeginMF_01495128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01495121 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01495129 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_01495118, 1, (STRLEN(?templateMotifCigarD0VWR1MF_01495118) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_01495118, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionD0VWR1119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495120, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495120) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495120, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495120) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01495121) - 1) AS ?thisPositionOn42) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_01495118, 1, (STRLEN(?templateMotifCigarD0VWR1MF_01495118) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_01495118, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionD0VWR1119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495120, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495120) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495120, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495120) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01495121) - 1) AS ?thisPositionOn43) . BIND(?this AS ?pfs1t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) . FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) . BIND(URI(CONCAT(STR(?this), '#MF_01495a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionD0VWR1140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR1142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarD0VWR1MF_01495135 . ?templateMotifSequenceMatchRegionD0VWR1140 faldo:begin ?templateMotifSequenceMatchBeginD0VWR1141 . ?templateMotifSequenceMatchBeginD0VWR1141 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR1136 ; faldo:reference isoform:D0VWR1-1 . ?templateMotifSequenceProfileAlignmentOperationD0VWR1142 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01495146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarD0VWR1MF_01495137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01495145 . ?targetMotifMatchRegionMatchBeginMF_01495145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01495138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01495146 edam:has_input signature:MF_01495 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_01495135, 1, (STRLEN(?templateMotifCigarD0VWR1MF_01495135) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_01495135, CONCAT('^(?:-*[^-]){', STR(((456 - ?templateMotifSequenceMatchBeginPositionD0VWR1136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495137, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495137) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495137, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495137) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01495138) - 1) AS ?thisPositionOn48) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR1MF_01495135, 1, (STRLEN(?templateMotifCigarD0VWR1MF_01495135) - STRLEN(REPLACE(?templateMotifCigarD0VWR1MF_01495135, CONCAT('^(?:-*[^-]){', STR(((471 - ?templateMotifSequenceMatchBeginPositionD0VWR1136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495137, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495137) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR1MF_01495137, 1, (STRLEN(?targetMotifMatchCigarD0VWR1MF_01495137) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR1MF_01495137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_01495138) - 1) AS ?thisPositionOn49) . BIND(?this AS ?pfs1t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) . FILTER ((BOUND(?thisPositionOn48) && BOUND(?thisPositionOn49))) . BIND(URI(CONCAT(STR(?this), '#MF_01495a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this a up:Protein . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1117 . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . BIND(?this AS ?case12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case13) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_01495 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01495#construct |