| http://purl.uniprot.org/unirules/MF_01497#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:543923 up:source unirule:MF_01497 .
_:543924 up:source unirule:MF_01497 .
_:543925 up:source unirule:MF_01497 .
_:543926 up:source unirule:MF_01497 .
_:543927 up:source unirule:MF_01497 .
_:543928 up:source unirule:MF_01497 .
_:543929 up:source unirule:MF_01497 .
_:543930 up:source unirule:MF_01497 .
_:543931 up:source unirule:MF_01497 .
_:543932 up:source unirule:MF_01497 .
_:543933 up:source unirule:MF_01497 .
_:543934 up:source unirule:MF_01497 .
_:543935 up:source unirule:MF_01497 .
_:543936 up:source unirule:MF_01497 .
_:543937 up:source unirule:MF_01497 .
_:543938 up:source unirule:MF_01497 .
_:543939 up:source unirule:MF_01497 .
_:543940 up:source unirule:MF_01497 .
_:543941 up:source unirule:MF_01497 .
_:543942 up:source unirule:MF_01497 .
_:543943 up:source unirule:MF_01497 .
_:543944 up:source unirule:MF_01497 .
_:543945 up:source unirule:MF_01497 .
_:543946 up:source unirule:MF_01497 .
_:543947 up:source unirule:MF_01497 .
_:543948 up:source unirule:MF_01497 .
_:543949 up:source unirule:MF_01497 .
_:543950 up:source unirule:MF_01497 .
_:543951 up:source unirule:MF_01497 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0000287 ,
GO:0004674 ,
GO:0005524 ,
GO:0005737 ,
keyword:346 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:597 ,
keyword:67 ,
keyword:723 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.11.1' ;
up:fullName 'Stress response kinase A' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Serine/threonine-protein kinase SrkA' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'srkA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SrkA/RdoA protein kinase family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:18420 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:18420 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'ATP' .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
_:543952 a rdf:Statement ;
up:attribution _:543923 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:543953 a rdf:Statement ;
up:attribution _:543924 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:543954 a rdf:Statement ;
up:attribution _:543925 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:543955 a rdf:Statement ;
up:attribution _:543926 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:543956 a rdf:Statement ;
up:attribution _:543927 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:543957 a rdf:Statement ;
up:attribution _:543928 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:543958 a rdf:Statement ;
up:attribution _:543929 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:543959 a rdf:Statement ;
up:attribution _:543930 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:543960 a rdf:Statement ;
up:attribution _:543931 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:543961 a rdf:Statement ;
up:attribution _:543932 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:543962 a rdf:Statement ;
up:attribution _:543933 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:543963 a rdf:Statement ;
up:attribution _:543934 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:543964 a rdf:Statement ;
up:attribution _:543935 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:543965 a rdf:Statement ;
up:attribution _:543936 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:543966 a rdf:Statement ;
up:attribution _:543937 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:543967 a rdf:Statement ;
up:attribution _:543938 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:543968 a rdf:Statement ;
up:attribution _:543939 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:543969 a rdf:Statement ;
up:attribution _:543940 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:723 .
_:543970 a rdf:Statement ;
up:attribution _:543941 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:346 .
_:543971 a rdf:Statement ;
up:attribution _:543942 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:543972 a rdf:Statement ;
up:attribution _:543943 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004674 .
_:543973 a rdf:Statement ;
up:attribution _:543944 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:543974 a rdf:Statement ;
up:attribution _:543945 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:543975 a rdf:Statement ;
up:attribution _:543946 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:543976 a rdf:Statement ;
up:source unirule:MF_01497 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:543977 a rdf:Statement ;
up:attribution _:543947 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:543978 a rdf:Statement ;
up:source unirule:MF_01497 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:543979 a rdf:Statement ;
up:attribution _:543948 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:543980 a rdf:Statement ;
up:source unirule:MF_01497 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:543981 a rdf:Statement ;
up:attribution _:543949 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:543982 a rdf:Statement ;
up:source unirule:MF_01497 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:543983 a rdf:Statement ;
up:attribution _:543950 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:543984 a rdf:Statement ;
up:source unirule:MF_01497 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:543985 a rdf:Statement ;
up:attribution _:543951 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01497
#Rule MF_01497 Created by:? on:2015-04-30 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01497 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01497a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionP0C0K350 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C0K352 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C0K3MF_0149745 .
?templateMotifSequenceMatchRegionP0C0K350 faldo:begin ?templateMotifSequenceMatchBeginP0C0K351 .
?templateMotifSequenceMatchBeginP0C0K351 faldo:position ?templateMotifSequenceMatchBeginPositionP0C0K346 ;
faldo:reference isoform:P0C0K3-1 .
?templateMotifSequenceProfileAlignmentOperationP0C0K352 edam:has_input signature:MF_01497 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149756 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C0K3MF_0149747 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149755 .
?targetMotifMatchRegionMatchBeginMF_0149755 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149748 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0149756 edam:has_input signature:MF_01497 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0K3MF_0149745, 1, (STRLEN(?templateMotifCigarP0C0K3MF_0149745) - STRLEN(REPLACE(?templateMotifCigarP0C0K3MF_0149745, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP0C0K346) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0K3MF_0149747, 1, (STRLEN(?targetMotifMatchCigarP0C0K3MF_0149747) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0K3MF_0149747, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0K3MF_0149747, 1, (STRLEN(?targetMotifMatchCigarP0C0K3MF_0149747) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0K3MF_0149747, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0149748) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionP0C0K365 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C0K367 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C0K3MF_0149760 .
?templateMotifSequenceMatchRegionP0C0K365 faldo:begin ?templateMotifSequenceMatchBeginP0C0K366 .
?templateMotifSequenceMatchBeginP0C0K366 faldo:position ?templateMotifSequenceMatchBeginPositionP0C0K361 ;
faldo:reference isoform:P0C0K3-1 .
?templateMotifSequenceProfileAlignmentOperationP0C0K367 edam:has_input signature:MF_01497 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149771 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C0K3MF_0149762 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149770 .
?targetMotifMatchRegionMatchBeginMF_0149770 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149763 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0149771 edam:has_input signature:MF_01497 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0K3MF_0149760, 1, (STRLEN(?templateMotifCigarP0C0K3MF_0149760) - STRLEN(REPLACE(?templateMotifCigarP0C0K3MF_0149760, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP0C0K361) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0K3MF_0149762, 1, (STRLEN(?targetMotifMatchCigarP0C0K3MF_0149762) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0K3MF_0149762, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0K3MF_0149762, 1, (STRLEN(?targetMotifMatchCigarP0C0K3MF_0149762) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0K3MF_0149762, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0149763) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP0C0K380 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C0K382 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C0K3MF_0149775 .
?templateMotifSequenceMatchRegionP0C0K380 faldo:begin ?templateMotifSequenceMatchBeginP0C0K381 .
?templateMotifSequenceMatchBeginP0C0K381 faldo:position ?templateMotifSequenceMatchBeginPositionP0C0K376 ;
faldo:reference isoform:P0C0K3-1 .
?templateMotifSequenceProfileAlignmentOperationP0C0K382 edam:has_input signature:MF_01497 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149786 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C0K3MF_0149777 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149785 .
?targetMotifMatchRegionMatchBeginMF_0149785 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149778 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0149786 edam:has_input signature:MF_01497 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0K3MF_0149775, 1, (STRLEN(?templateMotifCigarP0C0K3MF_0149775) - STRLEN(REPLACE(?templateMotifCigarP0C0K3MF_0149775, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionP0C0K376) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0K3MF_0149777, 1, (STRLEN(?targetMotifMatchCigarP0C0K3MF_0149777) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0K3MF_0149777, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0K3MF_0149777, 1, (STRLEN(?targetMotifMatchCigarP0C0K3MF_0149777) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0K3MF_0149777, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0149778) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP0C0K395 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C0K397 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C0K3MF_0149790 .
?templateMotifSequenceMatchRegionP0C0K395 faldo:begin ?templateMotifSequenceMatchBeginP0C0K396 .
?templateMotifSequenceMatchBeginP0C0K396 faldo:position ?templateMotifSequenceMatchBeginPositionP0C0K391 ;
faldo:reference isoform:P0C0K3-1 .
?templateMotifSequenceProfileAlignmentOperationP0C0K397 edam:has_input signature:MF_01497 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01497101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C0K3MF_0149792 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01497100 .
?targetMotifMatchRegionMatchBeginMF_01497100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149793 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01497101 edam:has_input signature:MF_01497 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0K3MF_0149790, 1, (STRLEN(?templateMotifCigarP0C0K3MF_0149790) - STRLEN(REPLACE(?templateMotifCigarP0C0K3MF_0149790, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP0C0K391) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0K3MF_0149792, 1, (STRLEN(?targetMotifMatchCigarP0C0K3MF_0149792) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0K3MF_0149792, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0K3MF_0149792, 1, (STRLEN(?targetMotifMatchCigarP0C0K3MF_0149792) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0K3MF_0149792, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0149793) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP0C0K3110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C0K3112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C0K3MF_01497105 .
?templateMotifSequenceMatchRegionP0C0K3110 faldo:begin ?templateMotifSequenceMatchBeginP0C0K3111 .
?templateMotifSequenceMatchBeginP0C0K3111 faldo:position ?templateMotifSequenceMatchBeginPositionP0C0K3106 ;
faldo:reference isoform:P0C0K3-1 .
?templateMotifSequenceProfileAlignmentOperationP0C0K3112 edam:has_input signature:MF_01497 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01497116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C0K3MF_01497107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01497115 .
?targetMotifMatchRegionMatchBeginMF_01497115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01497108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01497116 edam:has_input signature:MF_01497 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0K3MF_01497105, 1, (STRLEN(?templateMotifCigarP0C0K3MF_01497105) - STRLEN(REPLACE(?templateMotifCigarP0C0K3MF_01497105, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP0C0K3106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0K3MF_01497107, 1, (STRLEN(?targetMotifMatchCigarP0C0K3MF_01497107) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0K3MF_01497107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0K3MF_01497107, 1, (STRLEN(?targetMotifMatchCigarP0C0K3MF_01497107) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0K3MF_01497107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01497108) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01497a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
}
"xsd:string |
