| http://purl.uniprot.org/unirules/MF_01540#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:558530 up:source unirule:MF_01540 .
_:558531 up:source unirule:MF_01540 .
_:558532 up:source unirule:MF_01540 .
_:558533 up:source unirule:MF_01540 .
_:558534 up:source unirule:MF_01540 .
_:558535 up:source unirule:MF_01540 .
_:558536 up:source unirule:MF_01540 .
_:558537 up:source unirule:MF_01540 .
_:558538 up:source unirule:MF_01540 .
_:558539 up:source unirule:MF_01540 .
_:558540 up:source unirule:MF_01540 .
_:558541 up:source unirule:MF_01540 .
_:558542 up:source unirule:MF_01540 .
_:558543 up:source unirule:MF_01540 .
_:558544 up:source unirule:MF_01540 .
_:558545 up:source unirule:MF_01540 .
_:558546 up:source unirule:MF_01540 .
_:558547 up:source unirule:MF_01540 .
_:558548 up:source unirule:MF_01540 .
_:558549 up:source unirule:MF_01540 .
_:558550 up:source unirule:MF_01540 .
_:558551 up:source unirule:MF_01540 .
_:558552 up:source unirule:MF_01540 .
_:558553 up:source unirule:MF_01540 .
_:558554 up:source unirule:MF_01540 .
_:558555 up:source unirule:MF_01540 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0000103 ,
GO:0004783 ,
GO:0070814 ,
keyword:198 ,
keyword:28 ,
keyword:349 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:521 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.8.1.2' ;
up:fullName 'Sulfite reductase [NADPH] hemoprotein beta-component' ;
up:shortName 'SiR-HP' ,
'SiRHP' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'cysI' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:60052 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 siroheme per subunit.' .
?annotation6 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [4Fe-4S] cluster per subunit.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Sulfur metabolism; hydrogen sulfide biosynthesis; hydrogen sulfide from sulfite (NADPH route): step 1/1.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Alpha(8)-beta(8). The alpha component is a flavoprotein, the beta component is a hemoprotein.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:49883 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:49883 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:49883 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 up:ligandPart ?ligand35 ;
rdfs:subClassOf chebi:18248 ,
chebi:60052 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:49883 .
_:558556 a rdf:Statement ;
up:attribution _:558530 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:558557 a rdf:Statement ;
up:attribution _:558531 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:558558 a rdf:Statement ;
up:attribution _:558532 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:558559 a rdf:Statement ;
up:attribution _:558533 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:558560 a rdf:Statement ;
up:attribution _:558534 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:558561 a rdf:Statement ;
up:attribution _:558535 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:558562 a rdf:Statement ;
up:attribution _:558536 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:558563 a rdf:Statement ;
up:attribution _:558537 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:558564 a rdf:Statement ;
up:attribution _:558538 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:558565 a rdf:Statement ;
up:attribution _:558539 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:558566 a rdf:Statement ;
up:attribution _:558540 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:558567 a rdf:Statement ;
up:attribution _:558541 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:198 .
_:558568 a rdf:Statement ;
up:attribution _:558542 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:349 .
_:558569 a rdf:Statement ;
up:attribution _:558543 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:558570 a rdf:Statement ;
up:attribution _:558544 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:558571 a rdf:Statement ;
up:attribution _:558545 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:558572 a rdf:Statement ;
up:attribution _:558546 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:558573 a rdf:Statement ;
up:attribution _:558547 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:558574 a rdf:Statement ;
up:attribution _:558548 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004783 .
_:558575 a rdf:Statement ;
up:attribution _:558549 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000103 .
_:558576 a rdf:Statement ;
up:attribution _:558550 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070814 .
_:558577 a rdf:Statement ;
up:source unirule:MF_01540 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:558578 a rdf:Statement ;
up:attribution _:558551 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:558579 a rdf:Statement ;
up:source unirule:MF_01540 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:558580 a rdf:Statement ;
up:attribution _:558552 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:558581 a rdf:Statement ;
up:source unirule:MF_01540 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:558582 a rdf:Statement ;
up:attribution _:558553 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:558583 a rdf:Statement ;
up:source unirule:MF_01540 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:558584 a rdf:Statement ;
up:attribution _:558554 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:558585 a rdf:Statement ;
up:source unirule:MF_01540 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:558586 a rdf:Statement ;
up:attribution _:558555 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01540
#Rule MF_01540 Created by:? on:2005-08-22 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01540 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01540a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionP1784650 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1784652 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17846MF_0154045 .
?templateMotifSequenceMatchRegionP1784650 faldo:begin ?templateMotifSequenceMatchBeginP1784651 .
?templateMotifSequenceMatchBeginP1784651 faldo:position ?templateMotifSequenceMatchBeginPositionP1784646 ;
faldo:reference isoform:P17846-1 .
?templateMotifSequenceProfileAlignmentOperationP1784652 edam:has_input signature:MF_01540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0154056 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17846MF_0154047 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0154055 .
?targetMotifMatchRegionMatchBeginMF_0154055 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0154048 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0154056 edam:has_input signature:MF_01540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17846MF_0154045, 1, (STRLEN(?templateMotifCigarP17846MF_0154045) - STRLEN(REPLACE(?templateMotifCigarP17846MF_0154045, CONCAT('^(?:-*[^-]){', STR(((434 - ?templateMotifSequenceMatchBeginPositionP1784646) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17846MF_0154047, 1, (STRLEN(?targetMotifMatchCigarP17846MF_0154047) - STRLEN(REPLACE(?targetMotifMatchCigarP17846MF_0154047, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17846MF_0154047, 1, (STRLEN(?targetMotifMatchCigarP17846MF_0154047) - STRLEN(REPLACE(?targetMotifMatchCigarP17846MF_0154047, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0154048) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionP1784665 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1784667 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17846MF_0154060 .
?templateMotifSequenceMatchRegionP1784665 faldo:begin ?templateMotifSequenceMatchBeginP1784666 .
?templateMotifSequenceMatchBeginP1784666 faldo:position ?templateMotifSequenceMatchBeginPositionP1784661 ;
faldo:reference isoform:P17846-1 .
?templateMotifSequenceProfileAlignmentOperationP1784667 edam:has_input signature:MF_01540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0154071 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17846MF_0154062 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0154070 .
?targetMotifMatchRegionMatchBeginMF_0154070 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0154063 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0154071 edam:has_input signature:MF_01540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17846MF_0154060, 1, (STRLEN(?templateMotifCigarP17846MF_0154060) - STRLEN(REPLACE(?templateMotifCigarP17846MF_0154060, CONCAT('^(?:-*[^-]){', STR(((440 - ?templateMotifSequenceMatchBeginPositionP1784661) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17846MF_0154062, 1, (STRLEN(?targetMotifMatchCigarP17846MF_0154062) - STRLEN(REPLACE(?targetMotifMatchCigarP17846MF_0154062, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17846MF_0154062, 1, (STRLEN(?targetMotifMatchCigarP17846MF_0154062) - STRLEN(REPLACE(?targetMotifMatchCigarP17846MF_0154062, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0154063) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP1784680 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1784682 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17846MF_0154075 .
?templateMotifSequenceMatchRegionP1784680 faldo:begin ?templateMotifSequenceMatchBeginP1784681 .
?templateMotifSequenceMatchBeginP1784681 faldo:position ?templateMotifSequenceMatchBeginPositionP1784676 ;
faldo:reference isoform:P17846-1 .
?templateMotifSequenceProfileAlignmentOperationP1784682 edam:has_input signature:MF_01540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0154086 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17846MF_0154077 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0154085 .
?targetMotifMatchRegionMatchBeginMF_0154085 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0154078 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0154086 edam:has_input signature:MF_01540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17846MF_0154075, 1, (STRLEN(?templateMotifCigarP17846MF_0154075) - STRLEN(REPLACE(?templateMotifCigarP17846MF_0154075, CONCAT('^(?:-*[^-]){', STR(((479 - ?templateMotifSequenceMatchBeginPositionP1784676) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17846MF_0154077, 1, (STRLEN(?targetMotifMatchCigarP17846MF_0154077) - STRLEN(REPLACE(?targetMotifMatchCigarP17846MF_0154077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17846MF_0154077, 1, (STRLEN(?targetMotifMatchCigarP17846MF_0154077) - STRLEN(REPLACE(?targetMotifMatchCigarP17846MF_0154077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0154078) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP1784695 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1784697 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17846MF_0154090 .
?templateMotifSequenceMatchRegionP1784695 faldo:begin ?templateMotifSequenceMatchBeginP1784696 .
?templateMotifSequenceMatchBeginP1784696 faldo:position ?templateMotifSequenceMatchBeginPositionP1784691 ;
faldo:reference isoform:P17846-1 .
?templateMotifSequenceProfileAlignmentOperationP1784697 edam:has_input signature:MF_01540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01540101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17846MF_0154092 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01540100 .
?targetMotifMatchRegionMatchBeginMF_01540100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0154093 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01540101 edam:has_input signature:MF_01540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17846MF_0154090, 1, (STRLEN(?templateMotifCigarP17846MF_0154090) - STRLEN(REPLACE(?templateMotifCigarP17846MF_0154090, CONCAT('^(?:-*[^-]){', STR(((483 - ?templateMotifSequenceMatchBeginPositionP1784691) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17846MF_0154092, 1, (STRLEN(?targetMotifMatchCigarP17846MF_0154092) - STRLEN(REPLACE(?targetMotifMatchCigarP17846MF_0154092, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17846MF_0154092, 1, (STRLEN(?targetMotifMatchCigarP17846MF_0154092) - STRLEN(REPLACE(?targetMotifMatchCigarP17846MF_0154092, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0154093) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP17846110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17846112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17846MF_01540105 .
?templateMotifSequenceMatchRegionP17846110 faldo:begin ?templateMotifSequenceMatchBeginP17846111 .
?templateMotifSequenceMatchBeginP17846111 faldo:position ?templateMotifSequenceMatchBeginPositionP17846106 ;
faldo:reference isoform:P17846-1 .
?templateMotifSequenceProfileAlignmentOperationP17846112 edam:has_input signature:MF_01540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01540116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17846MF_01540107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01540115 .
?targetMotifMatchRegionMatchBeginMF_01540115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01540108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01540116 edam:has_input signature:MF_01540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17846MF_01540105, 1, (STRLEN(?templateMotifCigarP17846MF_01540105) - STRLEN(REPLACE(?templateMotifCigarP17846MF_01540105, CONCAT('^(?:-*[^-]){', STR(((483 - ?templateMotifSequenceMatchBeginPositionP17846106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17846MF_01540107, 1, (STRLEN(?targetMotifMatchCigarP17846MF_01540107) - STRLEN(REPLACE(?targetMotifMatchCigarP17846MF_01540107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17846MF_01540107, 1, (STRLEN(?targetMotifMatchCigarP17846MF_01540107) - STRLEN(REPLACE(?targetMotifMatchCigarP17846MF_01540107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01540108) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01540a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
}
"xsd:string |
