| http://purl.uniprot.org/unirules/MF_01568#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:566819 up:source unirule:MF_01568 .
_:566820 up:source unirule:MF_01568 .
_:566821 up:source unirule:MF_01568 .
_:566822 up:source unirule:MF_01568 .
_:566823 up:source unirule:MF_01568 .
_:566824 up:source unirule:MF_01568 .
_:566825 up:source unirule:MF_01568 .
_:566826 up:source unirule:MF_01568 .
_:566827 up:source unirule:MF_01568 .
_:566828 up:source unirule:MF_01568 .
_:566829 up:source unirule:MF_01568 .
_:566830 up:source unirule:MF_01568 .
_:566831 up:source unirule:MF_01568 .
_:566832 up:source unirule:MF_01568 .
_:566833 up:source unirule:MF_01568 .
_:566834 up:source unirule:MF_01568 .
_:566835 up:source unirule:MF_01568 .
_:566836 up:source unirule:MF_01568 .
_:566837 up:source unirule:MF_01568 .
_:566838 up:source unirule:MF_01568 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0000287 ,
GO:0017110 ,
GO:0017111 ,
keyword:378 ,
keyword:460 ,
keyword:479 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.6.1.15' ,
'3.6.1.6' ;
up:fullName 'Nucleoside triphosphate/diphosphate phosphatase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Has nucleoside phosphatase activity towards nucleoside triphosphates and nucleoside diphosphates.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Ntdp family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:18420 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:18420 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:18420 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:18420 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:18420 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:18420 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:18420 .
_:566839 a rdf:Statement ;
up:attribution _:566819 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:566840 a rdf:Statement ;
up:attribution _:566820 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:566841 a rdf:Statement ;
up:attribution _:566821 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:566842 a rdf:Statement ;
up:attribution _:566822 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:566843 a rdf:Statement ;
up:attribution _:566823 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:566844 a rdf:Statement ;
up:attribution _:566824 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:566845 a rdf:Statement ;
up:attribution _:566825 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:566846 a rdf:Statement ;
up:attribution _:566826 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:566847 a rdf:Statement ;
up:attribution _:566827 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:566848 a rdf:Statement ;
up:attribution _:566828 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0017111 .
_:566849 a rdf:Statement ;
up:attribution _:566829 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0017110 .
_:566850 a rdf:Statement ;
up:attribution _:566830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:566851 a rdf:Statement ;
up:source unirule:MF_01568 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:566852 a rdf:Statement ;
up:attribution _:566831 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:566853 a rdf:Statement ;
up:source unirule:MF_01568 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:566854 a rdf:Statement ;
up:attribution _:566832 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:566855 a rdf:Statement ;
up:source unirule:MF_01568 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:566856 a rdf:Statement ;
up:attribution _:566833 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:566857 a rdf:Statement ;
up:source unirule:MF_01568 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:566858 a rdf:Statement ;
up:attribution _:566834 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:566859 a rdf:Statement ;
up:source unirule:MF_01568 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:566860 a rdf:Statement ;
up:attribution _:566835 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:566861 a rdf:Statement ;
up:source unirule:MF_01568 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:566862 a rdf:Statement ;
up:attribution _:566836 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:566863 a rdf:Statement ;
up:source unirule:MF_01568 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:566864 a rdf:Statement ;
up:attribution _:566837 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:566865 a rdf:Statement ;
up:source unirule:MF_01568 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:566866 a rdf:Statement ;
up:attribution _:566838 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01568
#Rule MF_01568 Created by:? on:2006-08-07 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01568 .
?thisOrganism rdfs:subClassOf+ taxon:91061 .
BIND(URI(CONCAT(STR(?this), '#MF_01568a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionQ7A4T268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A4T270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A4T2MF_0156863 .
?templateMotifSequenceMatchRegionQ7A4T268 faldo:begin ?templateMotifSequenceMatchBeginQ7A4T269 .
?templateMotifSequenceMatchBeginQ7A4T269 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A4T264 ;
faldo:reference isoform:Q7A4T2-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A4T270 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0156874 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A4T2MF_0156865 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0156873 .
?targetMotifMatchRegionMatchBeginMF_0156873 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0156866 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0156874 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A4T2MF_0156863, 1, (STRLEN(?templateMotifCigarQ7A4T2MF_0156863) - STRLEN(REPLACE(?templateMotifCigarQ7A4T2MF_0156863, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ7A4T264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_0156865, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_0156865) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_0156865, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_0156865, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_0156865) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_0156865, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0156866) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionQ7A4T283 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A4T285 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A4T2MF_0156878 .
?templateMotifSequenceMatchRegionQ7A4T283 faldo:begin ?templateMotifSequenceMatchBeginQ7A4T284 .
?templateMotifSequenceMatchBeginQ7A4T284 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A4T279 ;
faldo:reference isoform:Q7A4T2-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A4T285 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0156889 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A4T2MF_0156880 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0156888 .
?targetMotifMatchRegionMatchBeginMF_0156888 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0156881 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0156889 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A4T2MF_0156878, 1, (STRLEN(?templateMotifCigarQ7A4T2MF_0156878) - STRLEN(REPLACE(?templateMotifCigarQ7A4T2MF_0156878, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ7A4T279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_0156880, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_0156880) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_0156880, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_0156880, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_0156880) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_0156880, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0156881) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionQ7A4T298 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A4T2100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A4T2MF_0156893 .
?templateMotifSequenceMatchRegionQ7A4T298 faldo:begin ?templateMotifSequenceMatchBeginQ7A4T299 .
?templateMotifSequenceMatchBeginQ7A4T299 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A4T294 ;
faldo:reference isoform:Q7A4T2-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A4T2100 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01568104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A4T2MF_0156895 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01568103 .
?targetMotifMatchRegionMatchBeginMF_01568103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0156896 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01568104 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A4T2MF_0156893, 1, (STRLEN(?templateMotifCigarQ7A4T2MF_0156893) - STRLEN(REPLACE(?templateMotifCigarQ7A4T2MF_0156893, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionQ7A4T294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_0156895, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_0156895) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_0156895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_0156895, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_0156895) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_0156895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0156896) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionQ7A4T2113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A4T2115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A4T2MF_01568108 .
?templateMotifSequenceMatchRegionQ7A4T2113 faldo:begin ?templateMotifSequenceMatchBeginQ7A4T2114 .
?templateMotifSequenceMatchBeginQ7A4T2114 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A4T2109 ;
faldo:reference isoform:Q7A4T2-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A4T2115 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01568119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A4T2MF_01568110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01568118 .
?targetMotifMatchRegionMatchBeginMF_01568118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01568111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01568119 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A4T2MF_01568108, 1, (STRLEN(?templateMotifCigarQ7A4T2MF_01568108) - STRLEN(REPLACE(?templateMotifCigarQ7A4T2MF_01568108, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionQ7A4T2109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_01568110, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_01568110) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_01568110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_01568110, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_01568110) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_01568110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01568111) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionQ7A4T2128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A4T2130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A4T2MF_01568123 .
?templateMotifSequenceMatchRegionQ7A4T2128 faldo:begin ?templateMotifSequenceMatchBeginQ7A4T2129 .
?templateMotifSequenceMatchBeginQ7A4T2129 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A4T2124 ;
faldo:reference isoform:Q7A4T2-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A4T2130 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01568134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A4T2MF_01568125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01568133 .
?targetMotifMatchRegionMatchBeginMF_01568133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01568126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01568134 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A4T2MF_01568123, 1, (STRLEN(?templateMotifCigarQ7A4T2MF_01568123) - STRLEN(REPLACE(?templateMotifCigarQ7A4T2MF_01568123, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionQ7A4T2124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_01568125, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_01568125) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_01568125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_01568125, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_01568125) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_01568125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_01568126) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionQ7A4T2143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A4T2145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A4T2MF_01568138 .
?templateMotifSequenceMatchRegionQ7A4T2143 faldo:begin ?templateMotifSequenceMatchBeginQ7A4T2144 .
?templateMotifSequenceMatchBeginQ7A4T2144 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A4T2139 ;
faldo:reference isoform:Q7A4T2-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A4T2145 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01568149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A4T2MF_01568140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01568148 .
?targetMotifMatchRegionMatchBeginMF_01568148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01568141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01568149 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A4T2MF_01568138, 1, (STRLEN(?templateMotifCigarQ7A4T2MF_01568138) - STRLEN(REPLACE(?templateMotifCigarQ7A4T2MF_01568138, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionQ7A4T2139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_01568140, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_01568140) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_01568140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_01568140, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_01568140) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_01568140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01568141) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionQ7A4T2158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A4T2160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A4T2MF_01568153 .
?templateMotifSequenceMatchRegionQ7A4T2158 faldo:begin ?templateMotifSequenceMatchBeginQ7A4T2159 .
?templateMotifSequenceMatchBeginQ7A4T2159 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A4T2154 ;
faldo:reference isoform:Q7A4T2-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A4T2160 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01568164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A4T2MF_01568155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01568163 .
?targetMotifMatchRegionMatchBeginMF_01568163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01568156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01568164 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A4T2MF_01568153, 1, (STRLEN(?templateMotifCigarQ7A4T2MF_01568153) - STRLEN(REPLACE(?templateMotifCigarQ7A4T2MF_01568153, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionQ7A4T2154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_01568155, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_01568155) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_01568155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_01568155, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_01568155) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_01568155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01568156) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionQ7A4T2173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7A4T2175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7A4T2MF_01568168 .
?templateMotifSequenceMatchRegionQ7A4T2173 faldo:begin ?templateMotifSequenceMatchBeginQ7A4T2174 .
?templateMotifSequenceMatchBeginQ7A4T2174 faldo:position ?templateMotifSequenceMatchBeginPositionQ7A4T2169 ;
faldo:reference isoform:Q7A4T2-1 .
?templateMotifSequenceProfileAlignmentOperationQ7A4T2175 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01568179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7A4T2MF_01568170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01568178 .
?targetMotifMatchRegionMatchBeginMF_01568178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01568171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01568179 edam:has_input signature:MF_01568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7A4T2MF_01568168, 1, (STRLEN(?templateMotifCigarQ7A4T2MF_01568168) - STRLEN(REPLACE(?templateMotifCigarQ7A4T2MF_01568168, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionQ7A4T2169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_01568170, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_01568170) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_01568170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7A4T2MF_01568170, 1, (STRLEN(?targetMotifMatchCigarQ7A4T2MF_01568170) - STRLEN(REPLACE(?targetMotifMatchCigarQ7A4T2MF_01568170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01568171) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01568a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
}
"xsd:string |
