| http://purl.uniprot.org/unirules/MF_01579#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:570704 up:source unirule:MF_01579 .
_:570705 up:source unirule:MF_01579 .
_:570706 up:source unirule:MF_01579 .
_:570707 up:source unirule:MF_01579 .
_:570708 up:source unirule:MF_01579 .
_:570709 up:source unirule:MF_01579 .
_:570710 up:source unirule:MF_01579 .
_:570711 up:source unirule:MF_01579 .
_:570712 up:source unirule:MF_01579 .
_:570713 up:source unirule:MF_01579 .
_:570714 up:source unirule:MF_01579 .
_:570715 up:source unirule:MF_01579 .
_:570716 up:source unirule:MF_01579 .
_:570717 up:source unirule:MF_01579 .
_:570718 up:source unirule:MF_01579 .
_:570719 up:source unirule:MF_01579 .
_:570720 up:source unirule:MF_01579 .
_:570721 up:source unirule:MF_01579 .
_:570722 up:source unirule:MF_01579 .
_:570723 up:source unirule:MF_01579 .
_:570724 up:source unirule:MF_01579 .
_:570725 up:source unirule:MF_01579 .
_:570726 up:source unirule:MF_01579 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0016434 ,
GO:0031167 ,
keyword:489 ,
keyword:694 ,
keyword:698 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.178' ;
up:fullName 'Ribosomal RNA small subunit methyltransferase F' ;
rdf:type up:Structured_Name .
?name1 up:fullName '16S rRNA m5C1407 methyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'rRNA (cytosine-C(5)-)-methyltransferase RsmF' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'rsmF' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:59789 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:59789 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:59789 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:59789 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:59789 .
_:570727 a rdf:Statement ;
up:attribution _:570704 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:570728 a rdf:Statement ;
up:attribution _:570705 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:570729 a rdf:Statement ;
up:attribution _:570706 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:570730 a rdf:Statement ;
up:attribution _:570707 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:570731 a rdf:Statement ;
up:attribution _:570708 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:570732 a rdf:Statement ;
up:attribution _:570709 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:570733 a rdf:Statement ;
up:attribution _:570710 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:570734 a rdf:Statement ;
up:attribution _:570711 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:570735 a rdf:Statement ;
up:attribution _:570712 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:570736 a rdf:Statement ;
up:attribution _:570713 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:570737 a rdf:Statement ;
up:attribution _:570714 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:570738 a rdf:Statement ;
up:attribution _:570715 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:570739 a rdf:Statement ;
up:attribution _:570716 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:570740 a rdf:Statement ;
up:attribution _:570717 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:570741 a rdf:Statement ;
up:attribution _:570718 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016434 .
_:570742 a rdf:Statement ;
up:attribution _:570719 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031167 .
_:570743 a rdf:Statement ;
up:attribution _:570720 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:570744 a rdf:Statement ;
up:source unirule:MF_01579 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:570745 a rdf:Statement ;
up:attribution _:570721 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:570746 a rdf:Statement ;
up:source unirule:MF_01579 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:570747 a rdf:Statement ;
up:attribution _:570722 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:570748 a rdf:Statement ;
up:source unirule:MF_01579 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:570749 a rdf:Statement ;
up:attribution _:570723 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:570750 a rdf:Statement ;
up:source unirule:MF_01579 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:570751 a rdf:Statement ;
up:attribution _:570724 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:570752 a rdf:Statement ;
up:source unirule:MF_01579 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:570753 a rdf:Statement ;
up:attribution _:570725 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:570754 a rdf:Statement ;
up:source unirule:MF_01579 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:570755 a rdf:Statement ;
up:attribution _:570726 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01579
#Rule MF_01579 Created by:? on:2007-04-02 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01579 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01579a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionP7627356 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7627358 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76273MF_0157951 .
?templateMotifSequenceMatchRegionP7627356 faldo:begin ?templateMotifSequenceMatchBeginP7627357 .
?templateMotifSequenceMatchBeginP7627357 faldo:position ?templateMotifSequenceMatchBeginPositionP7627352 ;
faldo:reference isoform:P76273-1 .
?templateMotifSequenceProfileAlignmentOperationP7627358 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0157962 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76273MF_0157953 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0157961 .
?targetMotifMatchRegionMatchBeginMF_0157961 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0157954 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0157962 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_4) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76273MF_0157951, 1, (STRLEN(?templateMotifCigarP76273MF_0157951) - STRLEN(REPLACE(?templateMotifCigarP76273MF_0157951, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP7627352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76273MF_0157953, 1, (STRLEN(?targetMotifMatchCigarP76273MF_0157953) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_0157953, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76273MF_0157953, 1, (STRLEN(?targetMotifMatchCigarP76273MF_0157953) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_0157953, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0157954) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP7627371 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7627373 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76273MF_0157966 .
?templateMotifSequenceMatchRegionP7627371 faldo:begin ?templateMotifSequenceMatchBeginP7627372 .
?templateMotifSequenceMatchBeginP7627372 faldo:position ?templateMotifSequenceMatchBeginPositionP7627367 ;
faldo:reference isoform:P76273-1 .
?templateMotifSequenceProfileAlignmentOperationP7627373 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0157977 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76273MF_0157968 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0157976 .
?targetMotifMatchRegionMatchBeginMF_0157976 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0157969 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0157977 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76273MF_0157966, 1, (STRLEN(?templateMotifCigarP76273MF_0157966) - STRLEN(REPLACE(?templateMotifCigarP76273MF_0157966, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP7627367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76273MF_0157968, 1, (STRLEN(?targetMotifMatchCigarP76273MF_0157968) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_0157968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76273MF_0157968, 1, (STRLEN(?targetMotifMatchCigarP76273MF_0157968) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_0157968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0157969) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76273MF_0157966, 1, (STRLEN(?templateMotifCigarP76273MF_0157966) - STRLEN(REPLACE(?templateMotifCigarP76273MF_0157966, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP7627367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76273MF_0157968, 1, (STRLEN(?targetMotifMatchCigarP76273MF_0157968) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_0157968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76273MF_0157968, 1, (STRLEN(?targetMotifMatchCigarP76273MF_0157968) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_0157968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0157969) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs2t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[ACSV][ACPS][AGP][PQ][AG][GINS]K', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP7627388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7627390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76273MF_0157983 .
?templateMotifSequenceMatchRegionP7627388 faldo:begin ?templateMotifSequenceMatchBeginP7627389 .
?templateMotifSequenceMatchBeginP7627389 faldo:position ?templateMotifSequenceMatchBeginPositionP7627384 ;
faldo:reference isoform:P76273-1 .
?templateMotifSequenceProfileAlignmentOperationP7627390 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0157994 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76273MF_0157985 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0157993 .
?targetMotifMatchRegionMatchBeginMF_0157993 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0157986 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0157994 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76273MF_0157983, 1, (STRLEN(?templateMotifCigarP76273MF_0157983) - STRLEN(REPLACE(?templateMotifCigarP76273MF_0157983, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP7627384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76273MF_0157985, 1, (STRLEN(?targetMotifMatchCigarP76273MF_0157985) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_0157985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76273MF_0157985, 1, (STRLEN(?targetMotifMatchCigarP76273MF_0157985) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_0157985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0157986) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs2t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP76273103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76273105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76273MF_0157998 .
?templateMotifSequenceMatchRegionP76273103 faldo:begin ?templateMotifSequenceMatchBeginP76273104 .
?templateMotifSequenceMatchBeginP76273104 faldo:position ?templateMotifSequenceMatchBeginPositionP7627399 ;
faldo:reference isoform:P76273-1 .
?templateMotifSequenceProfileAlignmentOperationP76273105 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01579109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76273MF_01579100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01579108 .
?targetMotifMatchRegionMatchBeginMF_01579108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01579101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01579109 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76273MF_0157998, 1, (STRLEN(?templateMotifCigarP76273MF_0157998) - STRLEN(REPLACE(?templateMotifCigarP76273MF_0157998, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionP7627399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76273MF_01579100, 1, (STRLEN(?targetMotifMatchCigarP76273MF_01579100) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_01579100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76273MF_01579100, 1, (STRLEN(?targetMotifMatchCigarP76273MF_01579100) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_01579100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01579101) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs2t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP76273118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76273120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76273MF_01579113 .
?templateMotifSequenceMatchRegionP76273118 faldo:begin ?templateMotifSequenceMatchBeginP76273119 .
?templateMotifSequenceMatchBeginP76273119 faldo:position ?templateMotifSequenceMatchBeginPositionP76273114 ;
faldo:reference isoform:P76273-1 .
?templateMotifSequenceProfileAlignmentOperationP76273120 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01579124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76273MF_01579115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01579123 .
?targetMotifMatchRegionMatchBeginMF_01579123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01579116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01579124 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76273MF_01579113, 1, (STRLEN(?templateMotifCigarP76273MF_01579113) - STRLEN(REPLACE(?templateMotifCigarP76273MF_01579113, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionP76273114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76273MF_01579115, 1, (STRLEN(?targetMotifMatchCigarP76273MF_01579115) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_01579115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76273MF_01579115, 1, (STRLEN(?targetMotifMatchCigarP76273MF_01579115) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_01579115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01579116) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP76273133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76273135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76273MF_01579128 .
?templateMotifSequenceMatchRegionP76273133 faldo:begin ?templateMotifSequenceMatchBeginP76273134 .
?templateMotifSequenceMatchBeginP76273134 faldo:position ?templateMotifSequenceMatchBeginPositionP76273129 ;
faldo:reference isoform:P76273-1 .
?templateMotifSequenceProfileAlignmentOperationP76273135 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01579139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76273MF_01579130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01579138 .
?targetMotifMatchRegionMatchBeginMF_01579138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01579131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01579139 edam:has_input signature:MF_01579 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76273MF_01579128, 1, (STRLEN(?templateMotifCigarP76273MF_01579128) - STRLEN(REPLACE(?templateMotifCigarP76273MF_01579128, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP76273129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76273MF_01579130, 1, (STRLEN(?targetMotifMatchCigarP76273MF_01579130) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_01579130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76273MF_01579130, 1, (STRLEN(?targetMotifMatchCigarP76273MF_01579130) - STRLEN(REPLACE(?targetMotifMatchCigarP76273MF_01579130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01579131) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs3t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01579a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
}
"xsd:string |
