| http://purl.uniprot.org/unirules/MF_01590#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:575220 up:source unirule:MF_01590 .
_:575221 up:source unirule:MF_01590 .
_:575222 up:source unirule:MF_01590 .
_:575223 up:source unirule:MF_01590 .
_:575224 up:source unirule:MF_01590 .
_:575225 up:source unirule:MF_01590 .
_:575226 up:source unirule:MF_01590 .
_:575227 up:source unirule:MF_01590 .
_:575228 up:source unirule:MF_01590 .
_:575229 up:source unirule:MF_01590 .
_:575230 up:source unirule:MF_01590 .
_:575231 up:source unirule:MF_01590 .
_:575232 up:source unirule:MF_01590 .
_:575233 up:source unirule:MF_01590 .
_:575234 up:source unirule:MF_01590 .
_:575235 up:source unirule:MF_01590 .
_:575236 up:source unirule:MF_01590 .
_:575237 up:source unirule:MF_01590 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0006400 ,
GO:0016765 ,
keyword:808 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.-' ;
up:fullName 'tRNA U34 carboxymethyltransferase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'cmoB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L-methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5-carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoB family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:134278 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:134278 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:134278 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:134278 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:134278 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:134278 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:134278 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:134278 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:134278 .
_:575238 a rdf:Statement ;
up:attribution _:575220 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:575239 a rdf:Statement ;
up:attribution _:575221 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:575240 a rdf:Statement ;
up:attribution _:575222 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:575241 a rdf:Statement ;
up:attribution _:575223 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:575242 a rdf:Statement ;
up:attribution _:575224 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:575243 a rdf:Statement ;
up:attribution _:575225 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:575244 a rdf:Statement ;
up:attribution _:575226 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:575245 a rdf:Statement ;
up:attribution _:575227 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016765 .
_:575246 a rdf:Statement ;
up:attribution _:575228 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006400 .
_:575247 a rdf:Statement ;
up:source unirule:MF_01590 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:575248 a rdf:Statement ;
up:attribution _:575229 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:575249 a rdf:Statement ;
up:source unirule:MF_01590 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:575250 a rdf:Statement ;
up:attribution _:575230 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:575251 a rdf:Statement ;
up:source unirule:MF_01590 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:575252 a rdf:Statement ;
up:attribution _:575231 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:575253 a rdf:Statement ;
up:source unirule:MF_01590 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:575254 a rdf:Statement ;
up:attribution _:575232 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:575255 a rdf:Statement ;
up:source unirule:MF_01590 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:575256 a rdf:Statement ;
up:attribution _:575233 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:575257 a rdf:Statement ;
up:source unirule:MF_01590 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:575258 a rdf:Statement ;
up:attribution _:575234 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:575259 a rdf:Statement ;
up:source unirule:MF_01590 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:575260 a rdf:Statement ;
up:attribution _:575235 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:575261 a rdf:Statement ;
up:source unirule:MF_01590 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:575262 a rdf:Statement ;
up:attribution _:575236 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:575263 a rdf:Statement ;
up:source unirule:MF_01590 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:575264 a rdf:Statement ;
up:attribution _:575237 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01590
#Rule MF_01590 Created by:? on:2007-11-22 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon70 {taxon:1150 taxon:1224}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01590 .
?thisOrganism rdfs:subClassOf+ ?supertaxon70 .
BIND(URI(CONCAT(STR(?this), '#MF_01590a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionP7629176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7629178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76291MF_0159071 .
?templateMotifSequenceMatchRegionP7629176 faldo:begin ?templateMotifSequenceMatchBeginP7629177 .
?templateMotifSequenceMatchBeginP7629177 faldo:position ?templateMotifSequenceMatchBeginPositionP7629172 ;
faldo:reference isoform:P76291-1 .
?templateMotifSequenceProfileAlignmentOperationP7629178 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0159082 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76291MF_0159073 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0159081 .
?targetMotifMatchRegionMatchBeginMF_0159081 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0159074 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0159082 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_0159071, 1, (STRLEN(?templateMotifCigarP76291MF_0159071) - STRLEN(REPLACE(?templateMotifCigarP76291MF_0159071, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP7629172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_0159073, 1, (STRLEN(?targetMotifMatchCigarP76291MF_0159073) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_0159073, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_0159073, 1, (STRLEN(?targetMotifMatchCigarP76291MF_0159073) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_0159073, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0159074) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_0159071, 1, (STRLEN(?templateMotifCigarP76291MF_0159071) - STRLEN(REPLACE(?templateMotifCigarP76291MF_0159071, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP7629172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_0159073, 1, (STRLEN(?targetMotifMatchCigarP76291MF_0159073) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_0159073, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_0159073, 1, (STRLEN(?targetMotifMatchCigarP76291MF_0159073) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_0159073, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0159074) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('[DE]P[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP7629193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7629195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76291MF_0159088 .
?templateMotifSequenceMatchRegionP7629193 faldo:begin ?templateMotifSequenceMatchBeginP7629194 .
?templateMotifSequenceMatchBeginP7629194 faldo:position ?templateMotifSequenceMatchBeginPositionP7629189 ;
faldo:reference isoform:P76291-1 .
?templateMotifSequenceProfileAlignmentOperationP7629195 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0159099 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76291MF_0159090 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0159098 .
?targetMotifMatchRegionMatchBeginMF_0159098 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0159091 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0159099 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_0159088, 1, (STRLEN(?templateMotifCigarP76291MF_0159088) - STRLEN(REPLACE(?templateMotifCigarP76291MF_0159088, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP7629189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_0159090, 1, (STRLEN(?targetMotifMatchCigarP76291MF_0159090) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_0159090, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_0159090, 1, (STRLEN(?targetMotifMatchCigarP76291MF_0159090) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_0159090, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0159091) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_0159088, 1, (STRLEN(?templateMotifCigarP76291MF_0159088) - STRLEN(REPLACE(?templateMotifCigarP76291MF_0159088, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionP7629189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_0159090, 1, (STRLEN(?targetMotifMatchCigarP76291MF_0159090) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_0159090, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_0159090, 1, (STRLEN(?targetMotifMatchCigarP76291MF_0159090) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_0159090, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0159091) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER (REGEX('[IVLM][ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP76291110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76291112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76291MF_01590105 .
?templateMotifSequenceMatchRegionP76291110 faldo:begin ?templateMotifSequenceMatchBeginP76291111 .
?templateMotifSequenceMatchBeginP76291111 faldo:position ?templateMotifSequenceMatchBeginPositionP76291106 ;
faldo:reference isoform:P76291-1 .
?templateMotifSequenceProfileAlignmentOperationP76291112 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01590116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76291MF_01590107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01590115 .
?targetMotifMatchRegionMatchBeginMF_01590115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01590108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01590116 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_01590105, 1, (STRLEN(?templateMotifCigarP76291MF_01590105) - STRLEN(REPLACE(?templateMotifCigarP76291MF_01590105, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP76291106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_01590107, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590107) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_01590107, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590107) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01590108) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP76291125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76291127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76291MF_01590120 .
?templateMotifSequenceMatchRegionP76291125 faldo:begin ?templateMotifSequenceMatchBeginP76291126 .
?templateMotifSequenceMatchBeginP76291126 faldo:position ?templateMotifSequenceMatchBeginPositionP76291121 ;
faldo:reference isoform:P76291-1 .
?templateMotifSequenceProfileAlignmentOperationP76291127 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01590131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76291MF_01590122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01590130 .
?targetMotifMatchRegionMatchBeginMF_01590130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01590123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01590131 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_01590120, 1, (STRLEN(?templateMotifCigarP76291MF_01590120) - STRLEN(REPLACE(?templateMotifCigarP76291MF_01590120, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP76291121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_01590122, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590122) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_01590122, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590122) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01590123) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP76291140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76291142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76291MF_01590135 .
?templateMotifSequenceMatchRegionP76291140 faldo:begin ?templateMotifSequenceMatchBeginP76291141 .
?templateMotifSequenceMatchBeginP76291141 faldo:position ?templateMotifSequenceMatchBeginPositionP76291136 ;
faldo:reference isoform:P76291-1 .
?templateMotifSequenceProfileAlignmentOperationP76291142 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01590146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76291MF_01590137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01590145 .
?targetMotifMatchRegionMatchBeginMF_01590145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01590138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01590146 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_01590135, 1, (STRLEN(?templateMotifCigarP76291MF_01590135) - STRLEN(REPLACE(?templateMotifCigarP76291MF_01590135, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionP76291136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_01590137, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590137) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_01590137, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590137) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01590138) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP76291155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76291157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76291MF_01590150 .
?templateMotifSequenceMatchRegionP76291155 faldo:begin ?templateMotifSequenceMatchBeginP76291156 .
?templateMotifSequenceMatchBeginP76291156 faldo:position ?templateMotifSequenceMatchBeginPositionP76291151 ;
faldo:reference isoform:P76291-1 .
?templateMotifSequenceProfileAlignmentOperationP76291157 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01590161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76291MF_01590152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01590160 .
?targetMotifMatchRegionMatchBeginMF_01590160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01590153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01590161 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_01590150, 1, (STRLEN(?templateMotifCigarP76291MF_01590150) - STRLEN(REPLACE(?templateMotifCigarP76291MF_01590150, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP76291151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_01590152, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590152) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_01590152, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590152) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01590153) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP76291170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76291172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76291MF_01590165 .
?templateMotifSequenceMatchRegionP76291170 faldo:begin ?templateMotifSequenceMatchBeginP76291171 .
?templateMotifSequenceMatchBeginP76291171 faldo:position ?templateMotifSequenceMatchBeginPositionP76291166 ;
faldo:reference isoform:P76291-1 .
?templateMotifSequenceProfileAlignmentOperationP76291172 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01590176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76291MF_01590167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01590175 .
?targetMotifMatchRegionMatchBeginMF_01590175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01590168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01590176 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_01590165, 1, (STRLEN(?templateMotifCigarP76291MF_01590165) - STRLEN(REPLACE(?templateMotifCigarP76291MF_01590165, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP76291166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_01590167, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590167) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_01590167, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590167) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01590168) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP76291185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76291187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76291MF_01590180 .
?templateMotifSequenceMatchRegionP76291185 faldo:begin ?templateMotifSequenceMatchBeginP76291186 .
?templateMotifSequenceMatchBeginP76291186 faldo:position ?templateMotifSequenceMatchBeginPositionP76291181 ;
faldo:reference isoform:P76291-1 .
?templateMotifSequenceProfileAlignmentOperationP76291187 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01590191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76291MF_01590182 .
?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01590190 .
?targetMotifMatchRegionMatchBeginMF_01590190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01590183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01590191 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_01590180, 1, (STRLEN(?templateMotifCigarP76291MF_01590180) - STRLEN(REPLACE(?templateMotifCigarP76291MF_01590180, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP76291181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_01590182, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590182) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_01590182, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590182) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_01590183) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP76291200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76291202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76291MF_01590195 .
?templateMotifSequenceMatchRegionP76291200 faldo:begin ?templateMotifSequenceMatchBeginP76291201 .
?templateMotifSequenceMatchBeginP76291201 faldo:position ?templateMotifSequenceMatchBeginPositionP76291196 ;
faldo:reference isoform:P76291-1 .
?templateMotifSequenceProfileAlignmentOperationP76291202 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01590206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76291MF_01590197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01590205 .
?targetMotifMatchRegionMatchBeginMF_01590205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01590198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01590206 edam:has_input signature:MF_01590 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76291MF_01590195, 1, (STRLEN(?templateMotifCigarP76291MF_01590195) - STRLEN(REPLACE(?templateMotifCigarP76291MF_01590195, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionP76291196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76291MF_01590197, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590197) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76291MF_01590197, 1, (STRLEN(?targetMotifMatchCigarP76291MF_01590197) - STRLEN(REPLACE(?targetMotifMatchCigarP76291MF_01590197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_01590198) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01590a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(?this AS ?case6) .
}
}
"xsd:string |
