| http://purl.uniprot.org/unirules/MF_01614#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:583544 up:source unirule:MF_01614 .
_:583545 up:source unirule:MF_01614 .
_:583546 up:source unirule:MF_01614 .
_:583547 up:source unirule:MF_01614 .
_:583548 up:source unirule:MF_01614 .
_:583549 up:source unirule:MF_01614 .
_:583550 up:source unirule:MF_01614 .
_:583551 up:source unirule:MF_01614 .
_:583552 up:source unirule:MF_01614 .
_:583553 up:source unirule:MF_01614 .
_:583554 up:source unirule:MF_01614 .
_:583555 up:source unirule:MF_01614 .
_:583556 up:source unirule:MF_01614 .
_:583557 up:source unirule:MF_01614 .
_:583558 up:source unirule:MF_01614 .
_:583559 up:source unirule:MF_01614 .
_:583560 up:source unirule:MF_01614 .
_:583561 up:source unirule:MF_01614 .
_:583562 up:source unirule:MF_01614 .
_:583563 up:source unirule:MF_01614 .
_:583564 up:source unirule:MF_01614 .
_:583565 up:source unirule:MF_01614 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0003959 ,
GO:0010181 ,
GO:0050661 ,
keyword:216 ,
keyword:285 ,
keyword:288 ,
keyword:521 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.6.99.1' ;
up:fullName 'NADPH dehydrogenase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'namA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reduction of the double bond of an array of alpha,beta-unsaturated aldehydes and ketones. It also reduces the nitro group of nitroester and nitroaromatic compounds. It could have a role in detoxification processes.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:58210 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NADH:flavin oxidoreductase/NADH oxidase family. NamA subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:58210 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:58210 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf ?molecule27 .
?molecule27 rdfs:label 'substrate' .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf ?molecule35 .
?molecule35 rdfs:label 'substrate' .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:58210 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:58210 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:58210 .
_:583566 a rdf:Statement ;
up:attribution _:583544 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:583567 a rdf:Statement ;
up:attribution _:583545 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:583568 a rdf:Statement ;
up:attribution _:583546 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:583569 a rdf:Statement ;
up:attribution _:583547 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:583570 a rdf:Statement ;
up:attribution _:583548 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:583571 a rdf:Statement ;
up:attribution _:583549 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:583572 a rdf:Statement ;
up:attribution _:583550 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:583573 a rdf:Statement ;
up:attribution _:583551 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:216 .
_:583574 a rdf:Statement ;
up:attribution _:583552 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:583575 a rdf:Statement ;
up:attribution _:583553 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:583576 a rdf:Statement ;
up:attribution _:583554 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:583577 a rdf:Statement ;
up:attribution _:583555 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:583578 a rdf:Statement ;
up:attribution _:583556 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003959 .
_:583579 a rdf:Statement ;
up:attribution _:583557 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010181 .
_:583580 a rdf:Statement ;
up:attribution _:583558 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050661 .
_:583581 a rdf:Statement ;
up:source unirule:MF_01614 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:583582 a rdf:Statement ;
up:attribution _:583559 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:583583 a rdf:Statement ;
up:source unirule:MF_01614 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:583584 a rdf:Statement ;
up:attribution _:583560 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:583585 a rdf:Statement ;
up:source unirule:MF_01614 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:583586 a rdf:Statement ;
up:attribution _:583561 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:583587 a rdf:Statement ;
up:source unirule:MF_01614 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:583588 a rdf:Statement ;
up:attribution _:583562 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:583589 a rdf:Statement ;
up:source unirule:MF_01614 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:583590 a rdf:Statement ;
up:attribution _:583563 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:583591 a rdf:Statement ;
up:source unirule:MF_01614 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:583592 a rdf:Statement ;
up:attribution _:583564 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:583593 a rdf:Statement ;
up:source unirule:MF_01614 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:583594 a rdf:Statement ;
up:attribution _:583565 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01614
#Rule MF_01614 Created by:? on:2005-06-01 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon59 {taxon:1385 taxon:186802}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01614 .
?thisOrganism rdfs:subClassOf+ ?supertaxon59 .
BIND(URI(CONCAT(STR(?this), '#MF_01614a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionP5455065 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5455067 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54550MF_0161460 .
?templateMotifSequenceMatchRegionP5455065 faldo:begin ?templateMotifSequenceMatchBeginP5455066 .
?templateMotifSequenceMatchBeginP5455066 faldo:position ?templateMotifSequenceMatchBeginPositionP5455061 ;
faldo:reference isoform:P54550-1 .
?templateMotifSequenceProfileAlignmentOperationP5455067 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161471 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54550MF_0161462 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161470 .
?targetMotifMatchRegionMatchBeginMF_0161470 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161463 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161471 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54550MF_0161460, 1, (STRLEN(?templateMotifCigarP54550MF_0161460) - STRLEN(REPLACE(?templateMotifCigarP54550MF_0161460, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP5455061) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54550MF_0161462, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161462) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54550MF_0161462, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161462) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0161463) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54550MF_0161460, 1, (STRLEN(?templateMotifCigarP54550MF_0161460) - STRLEN(REPLACE(?templateMotifCigarP54550MF_0161460, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP5455061) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54550MF_0161462, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161462) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54550MF_0161462, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161462) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0161463) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[SP]PMC', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP5455082 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5455084 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54550MF_0161477 .
?templateMotifSequenceMatchRegionP5455082 faldo:begin ?templateMotifSequenceMatchBeginP5455083 .
?templateMotifSequenceMatchBeginP5455083 faldo:position ?templateMotifSequenceMatchBeginPositionP5455078 ;
faldo:reference isoform:P54550-1 .
?templateMotifSequenceProfileAlignmentOperationP5455084 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161488 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54550MF_0161479 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161487 .
?targetMotifMatchRegionMatchBeginMF_0161487 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161480 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161488 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54550MF_0161477, 1, (STRLEN(?templateMotifCigarP54550MF_0161477) - STRLEN(REPLACE(?templateMotifCigarP54550MF_0161477, CONCAT('^(?:-*[^-]){', STR(((307 - ?templateMotifSequenceMatchBeginPositionP5455078) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54550MF_0161479, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161479) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54550MF_0161479, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161479) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0161480) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54550MF_0161477, 1, (STRLEN(?templateMotifCigarP54550MF_0161477) - STRLEN(REPLACE(?templateMotifCigarP54550MF_0161477, CONCAT('^(?:-*[^-]){', STR(((308 - ?templateMotifSequenceMatchBeginPositionP5455078) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54550MF_0161479, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161479) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54550MF_0161479, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161479) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0161480) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[AG]R', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP5455099 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54550101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54550MF_0161494 .
?templateMotifSequenceMatchRegionP5455099 faldo:begin ?templateMotifSequenceMatchBeginP54550100 .
?templateMotifSequenceMatchBeginP54550100 faldo:position ?templateMotifSequenceMatchBeginPositionP5455095 ;
faldo:reference isoform:P54550-1 .
?templateMotifSequenceProfileAlignmentOperationP54550101 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01614105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54550MF_0161496 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01614104 .
?targetMotifMatchRegionMatchBeginMF_01614104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161497 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01614105 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54550MF_0161494, 1, (STRLEN(?templateMotifCigarP54550MF_0161494) - STRLEN(REPLACE(?templateMotifCigarP54550MF_0161494, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP5455095) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54550MF_0161496, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161496) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161496, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54550MF_0161496, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161496) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161496, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0161497) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54550MF_0161494, 1, (STRLEN(?templateMotifCigarP54550MF_0161494) - STRLEN(REPLACE(?templateMotifCigarP54550MF_0161494, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionP5455095) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54550MF_0161496, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161496) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161496, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54550MF_0161496, 1, (STRLEN(?targetMotifMatchCigarP54550MF_0161496) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_0161496, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0161497) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse25) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]H', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP54550116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54550118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54550MF_01614111 .
?templateMotifSequenceMatchRegionP54550116 faldo:begin ?templateMotifSequenceMatchBeginP54550117 .
?templateMotifSequenceMatchBeginP54550117 faldo:position ?templateMotifSequenceMatchBeginPositionP54550112 ;
faldo:reference isoform:P54550-1 .
?templateMotifSequenceProfileAlignmentOperationP54550118 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01614122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54550MF_01614113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01614121 .
?targetMotifMatchRegionMatchBeginMF_01614121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01614114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01614122 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54550MF_01614111, 1, (STRLEN(?templateMotifCigarP54550MF_01614111) - STRLEN(REPLACE(?templateMotifCigarP54550MF_01614111, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP54550112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54550MF_01614113, 1, (STRLEN(?targetMotifMatchCigarP54550MF_01614113) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_01614113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54550MF_01614113, 1, (STRLEN(?targetMotifMatchCigarP54550MF_01614113) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_01614113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_01614114) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP54550131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54550133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54550MF_01614126 .
?templateMotifSequenceMatchRegionP54550131 faldo:begin ?templateMotifSequenceMatchBeginP54550132 .
?templateMotifSequenceMatchBeginP54550132 faldo:position ?templateMotifSequenceMatchBeginPositionP54550127 ;
faldo:reference isoform:P54550-1 .
?templateMotifSequenceProfileAlignmentOperationP54550133 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01614137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54550MF_01614128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01614136 .
?targetMotifMatchRegionMatchBeginMF_01614136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01614129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01614137 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54550MF_01614126, 1, (STRLEN(?templateMotifCigarP54550MF_01614126) - STRLEN(REPLACE(?templateMotifCigarP54550MF_01614126, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionP54550127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54550MF_01614128, 1, (STRLEN(?targetMotifMatchCigarP54550MF_01614128) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_01614128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54550MF_01614128, 1, (STRLEN(?targetMotifMatchCigarP54550MF_01614128) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_01614128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_01614129) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP54550146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54550148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54550MF_01614141 .
?templateMotifSequenceMatchRegionP54550146 faldo:begin ?templateMotifSequenceMatchBeginP54550147 .
?templateMotifSequenceMatchBeginP54550147 faldo:position ?templateMotifSequenceMatchBeginPositionP54550142 ;
faldo:reference isoform:P54550-1 .
?templateMotifSequenceProfileAlignmentOperationP54550148 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01614152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54550MF_01614143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01614151 .
?targetMotifMatchRegionMatchBeginMF_01614151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01614144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01614152 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54550MF_01614141, 1, (STRLEN(?templateMotifCigarP54550MF_01614141) - STRLEN(REPLACE(?templateMotifCigarP54550MF_01614141, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP54550142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54550MF_01614143, 1, (STRLEN(?targetMotifMatchCigarP54550MF_01614143) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_01614143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54550MF_01614143, 1, (STRLEN(?targetMotifMatchCigarP54550MF_01614143) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_01614143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01614144) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP54550161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54550163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54550MF_01614156 .
?templateMotifSequenceMatchRegionP54550161 faldo:begin ?templateMotifSequenceMatchBeginP54550162 .
?templateMotifSequenceMatchBeginP54550162 faldo:position ?templateMotifSequenceMatchBeginPositionP54550157 ;
faldo:reference isoform:P54550-1 .
?templateMotifSequenceProfileAlignmentOperationP54550163 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01614167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54550MF_01614158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01614166 .
?targetMotifMatchRegionMatchBeginMF_01614166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01614159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01614167 edam:has_input signature:MF_01614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54550MF_01614156, 1, (STRLEN(?templateMotifCigarP54550MF_01614156) - STRLEN(REPLACE(?templateMotifCigarP54550MF_01614156, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP54550157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54550MF_01614158, 1, (STRLEN(?targetMotifMatchCigarP54550MF_01614158) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_01614158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54550MF_01614158, 1, (STRLEN(?targetMotifMatchCigarP54550MF_01614158) - STRLEN(REPLACE(?targetMotifMatchCigarP54550MF_01614158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01614159) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01614a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
}
"xsd:string |
