| http://purl.uniprot.org/unirules/MF_01615#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:584019 up:source unirule:MF_01615 .
_:584020 up:source unirule:MF_01615 .
_:584021 up:source unirule:MF_01615 .
_:584022 up:source unirule:MF_01615 .
_:584023 up:source unirule:MF_01615 .
_:584024 up:source unirule:MF_01615 .
_:584025 up:source unirule:MF_01615 .
_:584026 up:source unirule:MF_01615 .
_:584027 up:source unirule:MF_01615 .
_:584028 up:source unirule:MF_01615 .
_:584029 up:source unirule:MF_01615 .
_:584030 up:source unirule:MF_01615 .
_:584031 up:source unirule:MF_01615 .
_:584032 up:source unirule:MF_01615 .
_:584033 up:source unirule:MF_01615 .
_:584034 up:source unirule:MF_01615 .
_:584035 up:source unirule:MF_01615 .
_:584036 up:source unirule:MF_01615 .
_:584037 up:source unirule:MF_01615 .
_:584038 up:source unirule:MF_01615 .
_:584039 up:source unirule:MF_01615 .
_:584040 up:source unirule:MF_01615 .
_:584041 up:source unirule:MF_01615 .
_:584042 up:source unirule:MF_01615 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0004359 ,
GO:0006543 ,
GO:0036381 ,
GO:0042823 ,
keyword:315 ,
keyword:378 ,
keyword:456 ,
keyword:663 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.3.3.6' ;
up:fullName "Pyridoxal 5'-phosphate synthase subunit PdxT" ;
rdf:type up:Structured_Name .
?name1 up:ecName '3.5.1.2' ;
up:fullName "Pyridoxal 5'-phosphate synthase glutaminase subunit" ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Pdx2' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'pdxT' .
?annotation4 a up:Function_Annotation ;
rdfs:comment "Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS." .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment "Cofactor biosynthesis; pyridoxal 5'-phosphate biosynthesis." .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'In the presence of PdxS, forms a dodecamer of heterodimers. Only shows activity in the heterodimer.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glutaminase PdxT/SNO family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:58359 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:58359 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:58359 .
_:584043 a rdf:Statement ;
up:attribution _:584019 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:584044 a rdf:Statement ;
up:attribution _:584020 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:584045 a rdf:Statement ;
up:attribution _:584021 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:584046 a rdf:Statement ;
up:attribution _:584022 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:584047 a rdf:Statement ;
up:attribution _:584023 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:584048 a rdf:Statement ;
up:attribution _:584024 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:584049 a rdf:Statement ;
up:attribution _:584025 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:584050 a rdf:Statement ;
up:attribution _:584026 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:584051 a rdf:Statement ;
up:attribution _:584027 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:584052 a rdf:Statement ;
up:attribution _:584028 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:584053 a rdf:Statement ;
up:attribution _:584029 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:315 .
_:584054 a rdf:Statement ;
up:attribution _:584030 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:584055 a rdf:Statement ;
up:attribution _:584031 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:584056 a rdf:Statement ;
up:attribution _:584032 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:584057 a rdf:Statement ;
up:attribution _:584033 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004359 .
_:584058 a rdf:Statement ;
up:attribution _:584034 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0036381 .
_:584059 a rdf:Statement ;
up:attribution _:584035 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006543 .
_:584060 a rdf:Statement ;
up:attribution _:584036 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042823 .
_:584061 a rdf:Statement ;
up:source unirule:MF_01615 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:584062 a rdf:Statement ;
up:attribution _:584037 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:584063 a rdf:Statement ;
up:source unirule:MF_01615 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:584064 a rdf:Statement ;
up:attribution _:584038 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:584065 a rdf:Statement ;
up:source unirule:MF_01615 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:584066 a rdf:Statement ;
up:attribution _:584039 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:584067 a rdf:Statement ;
up:source unirule:MF_01615 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:584068 a rdf:Statement ;
up:attribution _:584040 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:584069 a rdf:Statement ;
up:source unirule:MF_01615 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:584070 a rdf:Statement ;
up:attribution _:584041 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:584071 a rdf:Statement ;
up:source unirule:MF_01615 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:584072 a rdf:Statement ;
up:attribution _:584042 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01615
#Rule MF_01615 Created by:? on:2005-06-13 Modified by:Catherine Rivoire on:2025-09-18
VALUES ?supertaxon51 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01615 .
?thisOrganism rdfs:subClassOf+ ?supertaxon51 .
BIND(URI(CONCAT(STR(?this), '#MF_01615a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionP3752857 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3752859 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37528MF_0161552 .
?templateMotifSequenceMatchRegionP3752857 faldo:begin ?templateMotifSequenceMatchBeginP3752858 .
?templateMotifSequenceMatchBeginP3752858 faldo:position ?templateMotifSequenceMatchBeginPositionP3752853 ;
faldo:reference isoform:P37528-1 .
?templateMotifSequenceProfileAlignmentOperationP3752859 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161563 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37528MF_0161554 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161562 .
?targetMotifMatchRegionMatchBeginMF_0161562 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161555 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161563 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37528MF_0161552, 1, (STRLEN(?templateMotifCigarP37528MF_0161552) - STRLEN(REPLACE(?templateMotifCigarP37528MF_0161552, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP3752853) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37528MF_0161554, 1, (STRLEN(?targetMotifMatchCigarP37528MF_0161554) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_0161554, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37528MF_0161554, 1, (STRLEN(?targetMotifMatchCigarP37528MF_0161554) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_0161554, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0161555) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37528MF_0161552, 1, (STRLEN(?templateMotifCigarP37528MF_0161552) - STRLEN(REPLACE(?templateMotifCigarP37528MF_0161552, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP3752853) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37528MF_0161554, 1, (STRLEN(?targetMotifMatchCigarP37528MF_0161554) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_0161554, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37528MF_0161554, 1, (STRLEN(?targetMotifMatchCigarP37528MF_0161554) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_0161554, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0161555) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionP3752874 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3752876 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37528MF_0161569 .
?templateMotifSequenceMatchRegionP3752874 faldo:begin ?templateMotifSequenceMatchBeginP3752875 .
?templateMotifSequenceMatchBeginP3752875 faldo:position ?templateMotifSequenceMatchBeginPositionP3752870 ;
faldo:reference isoform:P37528-1 .
?templateMotifSequenceProfileAlignmentOperationP3752876 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161580 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37528MF_0161571 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161579 .
?targetMotifMatchRegionMatchBeginMF_0161579 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161572 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161580 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37528MF_0161569, 1, (STRLEN(?templateMotifCigarP37528MF_0161569) - STRLEN(REPLACE(?templateMotifCigarP37528MF_0161569, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP3752870) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37528MF_0161571, 1, (STRLEN(?targetMotifMatchCigarP37528MF_0161571) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_0161571, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37528MF_0161571, 1, (STRLEN(?targetMotifMatchCigarP37528MF_0161571) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_0161571, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0161572) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37528MF_0161569, 1, (STRLEN(?templateMotifCigarP37528MF_0161569) - STRLEN(REPLACE(?templateMotifCigarP37528MF_0161569, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP3752870) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37528MF_0161571, 1, (STRLEN(?targetMotifMatchCigarP37528MF_0161571) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_0161571, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37528MF_0161571, 1, (STRLEN(?targetMotifMatchCigarP37528MF_0161571) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_0161571, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0161572) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)) = 'IR')) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP3752891 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3752893 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37528MF_0161586 .
?templateMotifSequenceMatchRegionP3752891 faldo:begin ?templateMotifSequenceMatchBeginP3752892 .
?templateMotifSequenceMatchBeginP3752892 faldo:position ?templateMotifSequenceMatchBeginPositionP3752887 ;
faldo:reference isoform:P37528-1 .
?templateMotifSequenceProfileAlignmentOperationP3752893 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161597 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37528MF_0161588 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161596 .
?targetMotifMatchRegionMatchBeginMF_0161596 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161589 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161597 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37528MF_0161586, 1, (STRLEN(?templateMotifCigarP37528MF_0161586) - STRLEN(REPLACE(?templateMotifCigarP37528MF_0161586, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionP3752887) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37528MF_0161588, 1, (STRLEN(?targetMotifMatchCigarP37528MF_0161588) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_0161588, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37528MF_0161588, 1, (STRLEN(?targetMotifMatchCigarP37528MF_0161588) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_0161588, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0161589) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP37528106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37528108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37528MF_01615101 .
?templateMotifSequenceMatchRegionP37528106 faldo:begin ?templateMotifSequenceMatchBeginP37528107 .
?templateMotifSequenceMatchBeginP37528107 faldo:position ?templateMotifSequenceMatchBeginPositionP37528102 ;
faldo:reference isoform:P37528-1 .
?templateMotifSequenceProfileAlignmentOperationP37528108 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01615112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37528MF_01615103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01615111 .
?targetMotifMatchRegionMatchBeginMF_01615111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01615104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01615112 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37528MF_01615101, 1, (STRLEN(?templateMotifCigarP37528MF_01615101) - STRLEN(REPLACE(?templateMotifCigarP37528MF_01615101, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP37528102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37528MF_01615103, 1, (STRLEN(?targetMotifMatchCigarP37528MF_01615103) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_01615103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37528MF_01615103, 1, (STRLEN(?targetMotifMatchCigarP37528MF_01615103) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_01615103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01615104) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP37528121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37528123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37528MF_01615116 .
?templateMotifSequenceMatchRegionP37528121 faldo:begin ?templateMotifSequenceMatchBeginP37528122 .
?templateMotifSequenceMatchBeginP37528122 faldo:position ?templateMotifSequenceMatchBeginPositionP37528117 ;
faldo:reference isoform:P37528-1 .
?templateMotifSequenceProfileAlignmentOperationP37528123 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01615127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37528MF_01615118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01615126 .
?targetMotifMatchRegionMatchBeginMF_01615126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01615119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01615127 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37528MF_01615116, 1, (STRLEN(?templateMotifCigarP37528MF_01615116) - STRLEN(REPLACE(?templateMotifCigarP37528MF_01615116, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionP37528117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37528MF_01615118, 1, (STRLEN(?targetMotifMatchCigarP37528MF_01615118) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_01615118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37528MF_01615118, 1, (STRLEN(?targetMotifMatchCigarP37528MF_01615118) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_01615118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01615119) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP37528136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37528138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37528MF_01615131 .
?templateMotifSequenceMatchRegionP37528136 faldo:begin ?templateMotifSequenceMatchBeginP37528137 .
?templateMotifSequenceMatchBeginP37528137 faldo:position ?templateMotifSequenceMatchBeginPositionP37528132 ;
faldo:reference isoform:P37528-1 .
?templateMotifSequenceProfileAlignmentOperationP37528138 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01615142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37528MF_01615133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01615141 .
?targetMotifMatchRegionMatchBeginMF_01615141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01615134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01615142 edam:has_input signature:MF_01615 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37528MF_01615131, 1, (STRLEN(?templateMotifCigarP37528MF_01615131) - STRLEN(REPLACE(?templateMotifCigarP37528MF_01615131, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP37528132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37528MF_01615133, 1, (STRLEN(?targetMotifMatchCigarP37528MF_01615133) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_01615133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37528MF_01615133, 1, (STRLEN(?targetMotifMatchCigarP37528MF_01615133) - STRLEN(REPLACE(?targetMotifMatchCigarP37528MF_01615133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01615134) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01615a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
}
"xsd:string |
