| http://purl.uniprot.org/unirules/MF_01634#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:594428 up:source unirule:MF_01634 .
_:594429 up:source unirule:MF_01634 .
_:594430 up:source unirule:MF_01634 .
_:594431 up:source unirule:MF_01634 .
_:594432 up:source unirule:MF_01634 .
_:594433 up:source unirule:MF_01634 .
_:594434 up:source unirule:MF_01634 .
_:594435 up:source unirule:MF_01634 .
_:594436 up:source unirule:MF_01634 .
_:594437 up:source unirule:MF_01634 .
_:594438 up:source unirule:MF_01634 .
_:594439 up:source unirule:MF_01634 .
_:594440 up:source unirule:MF_01634 .
_:594441 up:source unirule:MF_01634 .
_:594442 up:source unirule:MF_01634 .
_:594443 up:source unirule:MF_01634 .
_:594444 up:source unirule:MF_01634 .
_:594445 up:source unirule:MF_01634 .
_:594446 up:source unirule:MF_01634 .
_:594447 up:source unirule:MF_01634 .
_:594448 up:source unirule:MF_01634 .
_:594449 up:source unirule:MF_01634 .
_:594450 up:source unirule:MF_01634 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0006400 ,
GO:0008270 ,
GO:0016763 ,
keyword:328 ,
keyword:479 ,
keyword:808 ,
keyword:819 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.2.48' ;
up:fullName 'tRNA-guanine(15) transglycosylase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '7-cyano-7-deazaguanine tRNA-ribosyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Archaeal tRNA-guanine transglycosylase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'tgtA' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'tRNA modification; archaeosine-tRNA biosynthesis.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the archaeosine tRNA-ribosyltransferase family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29105 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29105 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf ?molecule42 .
?molecule42 rdfs:label 'substrate' .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf ?molecule50 .
?molecule50 rdfs:label 'substrate' .
_:594451 a rdf:Statement ;
up:attribution _:594428 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:594452 a rdf:Statement ;
up:attribution _:594429 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:594453 a rdf:Statement ;
up:attribution _:594430 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:594454 a rdf:Statement ;
up:attribution _:594431 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:594455 a rdf:Statement ;
up:attribution _:594432 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:594456 a rdf:Statement ;
up:attribution _:594433 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:594457 a rdf:Statement ;
up:attribution _:594434 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:594458 a rdf:Statement ;
up:attribution _:594435 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:594459 a rdf:Statement ;
up:attribution _:594436 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:594460 a rdf:Statement ;
up:attribution _:594437 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:594461 a rdf:Statement ;
up:attribution _:594438 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:594462 a rdf:Statement ;
up:attribution _:594439 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:594463 a rdf:Statement ;
up:attribution _:594440 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:594464 a rdf:Statement ;
up:attribution _:594441 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:594465 a rdf:Statement ;
up:attribution _:594442 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016763 .
_:594466 a rdf:Statement ;
up:attribution _:594443 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:594467 a rdf:Statement ;
up:attribution _:594444 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006400 .
_:594468 a rdf:Statement ;
up:source unirule:MF_01634 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:594469 a rdf:Statement ;
up:attribution _:594445 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:594470 a rdf:Statement ;
up:source unirule:MF_01634 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:594471 a rdf:Statement ;
up:attribution _:594446 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:594472 a rdf:Statement ;
up:source unirule:MF_01634 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:594473 a rdf:Statement ;
up:attribution _:594447 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:594474 a rdf:Statement ;
up:source unirule:MF_01634 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:594475 a rdf:Statement ;
up:attribution _:594448 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:594476 a rdf:Statement ;
up:source unirule:MF_01634 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:594477 a rdf:Statement ;
up:attribution _:594449 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:594478 a rdf:Statement ;
up:source unirule:MF_01634 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:594479 a rdf:Statement ;
up:attribution _:594450 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01634
#Rule MF_01634 Created by:? on:2006-07-11 Modified by:Elisabeth Coudert on:2025-05-15
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01634 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01634a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionO5884358 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5884360 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58843MF_0163453 .
?templateMotifSequenceMatchRegionO5884358 faldo:begin ?templateMotifSequenceMatchBeginO5884359 .
?templateMotifSequenceMatchBeginO5884359 faldo:position ?templateMotifSequenceMatchBeginPositionO5884354 ;
faldo:reference isoform:O58843-1 .
?templateMotifSequenceProfileAlignmentOperationO5884360 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0163464 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58843MF_0163455 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0163463 .
?targetMotifMatchRegionMatchBeginMF_0163463 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0163456 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0163464 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58843MF_0163453, 1, (STRLEN(?templateMotifCigarO58843MF_0163453) - STRLEN(REPLACE(?templateMotifCigarO58843MF_0163453, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionO5884354) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58843MF_0163455, 1, (STRLEN(?targetMotifMatchCigarO58843MF_0163455) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_0163455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58843MF_0163455, 1, (STRLEN(?targetMotifMatchCigarO58843MF_0163455) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_0163455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0163456) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionO5884373 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5884375 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58843MF_0163468 .
?templateMotifSequenceMatchRegionO5884373 faldo:begin ?templateMotifSequenceMatchBeginO5884374 .
?templateMotifSequenceMatchBeginO5884374 faldo:position ?templateMotifSequenceMatchBeginPositionO5884369 ;
faldo:reference isoform:O58843-1 .
?templateMotifSequenceProfileAlignmentOperationO5884375 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0163479 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58843MF_0163470 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0163478 .
?targetMotifMatchRegionMatchBeginMF_0163478 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0163471 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0163479 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58843MF_0163468, 1, (STRLEN(?templateMotifCigarO58843MF_0163468) - STRLEN(REPLACE(?templateMotifCigarO58843MF_0163468, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionO5884369) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58843MF_0163470, 1, (STRLEN(?targetMotifMatchCigarO58843MF_0163470) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_0163470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58843MF_0163470, 1, (STRLEN(?targetMotifMatchCigarO58843MF_0163470) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_0163470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0163471) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionO5884388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5884390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58843MF_0163483 .
?templateMotifSequenceMatchRegionO5884388 faldo:begin ?templateMotifSequenceMatchBeginO5884389 .
?templateMotifSequenceMatchBeginO5884389 faldo:position ?templateMotifSequenceMatchBeginPositionO5884384 ;
faldo:reference isoform:O58843-1 .
?templateMotifSequenceProfileAlignmentOperationO5884390 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0163494 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58843MF_0163485 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0163493 .
?targetMotifMatchRegionMatchBeginMF_0163493 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0163486 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0163494 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58843MF_0163483, 1, (STRLEN(?templateMotifCigarO58843MF_0163483) - STRLEN(REPLACE(?templateMotifCigarO58843MF_0163483, CONCAT('^(?:-*[^-]){', STR(((281 - ?templateMotifSequenceMatchBeginPositionO5884384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58843MF_0163485, 1, (STRLEN(?targetMotifMatchCigarO58843MF_0163485) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_0163485, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58843MF_0163485, 1, (STRLEN(?targetMotifMatchCigarO58843MF_0163485) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_0163485, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0163486) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionO58843103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58843105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58843MF_0163498 .
?templateMotifSequenceMatchRegionO58843103 faldo:begin ?templateMotifSequenceMatchBeginO58843104 .
?templateMotifSequenceMatchBeginO58843104 faldo:position ?templateMotifSequenceMatchBeginPositionO5884399 ;
faldo:reference isoform:O58843-1 .
?templateMotifSequenceProfileAlignmentOperationO58843105 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01634109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58843MF_01634100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01634108 .
?targetMotifMatchRegionMatchBeginMF_01634108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01634101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01634109 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58843MF_0163498, 1, (STRLEN(?templateMotifCigarO58843MF_0163498) - STRLEN(REPLACE(?templateMotifCigarO58843MF_0163498, CONCAT('^(?:-*[^-]){', STR(((284 - ?templateMotifSequenceMatchBeginPositionO5884399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58843MF_01634100, 1, (STRLEN(?targetMotifMatchCigarO58843MF_01634100) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_01634100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58843MF_01634100, 1, (STRLEN(?targetMotifMatchCigarO58843MF_01634100) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_01634100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01634101) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionO58843118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58843120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58843MF_01634113 .
?templateMotifSequenceMatchRegionO58843118 faldo:begin ?templateMotifSequenceMatchBeginO58843119 .
?templateMotifSequenceMatchBeginO58843119 faldo:position ?templateMotifSequenceMatchBeginPositionO58843114 ;
faldo:reference isoform:O58843-1 .
?templateMotifSequenceProfileAlignmentOperationO58843120 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01634124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58843MF_01634115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01634123 .
?targetMotifMatchRegionMatchBeginMF_01634123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01634116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01634124 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58843MF_01634113, 1, (STRLEN(?templateMotifCigarO58843MF_01634113) - STRLEN(REPLACE(?templateMotifCigarO58843MF_01634113, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionO58843114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58843MF_01634115, 1, (STRLEN(?targetMotifMatchCigarO58843MF_01634115) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_01634115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58843MF_01634115, 1, (STRLEN(?targetMotifMatchCigarO58843MF_01634115) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_01634115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01634116) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionO58843133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58843135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58843MF_01634128 .
?templateMotifSequenceMatchRegionO58843133 faldo:begin ?templateMotifSequenceMatchBeginO58843134 .
?templateMotifSequenceMatchBeginO58843134 faldo:position ?templateMotifSequenceMatchBeginPositionO58843129 ;
faldo:reference isoform:O58843-1 .
?templateMotifSequenceProfileAlignmentOperationO58843135 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01634139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58843MF_01634130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01634138 .
?targetMotifMatchRegionMatchBeginMF_01634138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01634131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01634139 edam:has_input signature:MF_01634 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58843MF_01634128, 1, (STRLEN(?templateMotifCigarO58843MF_01634128) - STRLEN(REPLACE(?templateMotifCigarO58843MF_01634128, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionO58843129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58843MF_01634130, 1, (STRLEN(?targetMotifMatchCigarO58843MF_01634130) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_01634130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58843MF_01634130, 1, (STRLEN(?targetMotifMatchCigarO58843MF_01634130) - STRLEN(REPLACE(?targetMotifMatchCigarO58843MF_01634130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01634131) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse48) .
FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01634a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
}
"xsd:string |
