| http://purl.uniprot.org/unirules/MF_01648#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:601854 up:source unirule:MF_01648 .
_:601855 up:source unirule:MF_01648 .
_:601856 up:source unirule:MF_01648 .
_:601857 up:source unirule:MF_01648 .
_:601858 up:source unirule:MF_01648 .
_:601859 up:source unirule:MF_01648 .
_:601860 up:source unirule:MF_01648 .
_:601861 up:source unirule:MF_01648 .
_:601862 up:source unirule:MF_01648 .
_:601863 up:source unirule:MF_01648 .
_:601864 up:source unirule:MF_01648 .
_:601865 up:source unirule:MF_01648 .
_:601866 up:source unirule:MF_01648 .
_:601867 up:source unirule:MF_01648 .
_:601868 up:source unirule:MF_01648 .
_:601869 up:source unirule:MF_01648 .
_:601870 up:source unirule:MF_01648 .
_:601871 up:source unirule:MF_01648 .
_:601872 up:source unirule:MF_01648 .
_:601873 up:source unirule:MF_01648 .
_:601874 up:source unirule:MF_01648 .
_:601875 up:source unirule:MF_01648 .
_:601876 up:source unirule:MF_01648 .
_:601877 up:source unirule:MF_01648 .
_:601878 up:source unirule:MF_01648 .
_:601879 up:source unirule:MF_01648 .
_:601880 up:source unirule:MF_01648 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0005506 ,
GO:0008695 ,
GO:0019380 ,
keyword:1 ,
keyword:223 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:520 ,
keyword:560 ,
keyword:58 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.14.12.19' ;
up:fullName '3-phenylpropionate/cinnamic acid dioxygenase subunit alpha' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'hcaE' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Part of the multicomponent 3-phenylpropionate dioxygenase. Converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid-dihydrodiol (CI-dihydrodiol), respectively.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:24875 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Fe cation.' .
?annotation8 up:cofactor chebi:190135 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [2Fe-2S] cluster per subunit.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Aromatic compound metabolism; 3-phenylpropanoate degradation.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'This dioxygenase system consists of four proteins: the two subunits of the hydroxylase component (HcaE and HcaF), a ferredoxin (HcaC) and a ferredoxin reductase (HcaD).' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the bacterial ring-hydroxylating dioxygenase alpha subunit family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:190135 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:190135 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:190135 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:190135 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:24875 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:24875 .
_:601881 a rdf:Statement ;
up:attribution _:601854 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:601882 a rdf:Statement ;
up:attribution _:601855 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:601883 a rdf:Statement ;
up:attribution _:601856 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:601884 a rdf:Statement ;
up:attribution _:601857 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:601885 a rdf:Statement ;
up:attribution _:601858 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:601886 a rdf:Statement ;
up:attribution _:601859 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:601887 a rdf:Statement ;
up:attribution _:601860 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:601888 a rdf:Statement ;
up:attribution _:601861 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:601889 a rdf:Statement ;
up:attribution _:601862 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:601890 a rdf:Statement ;
up:attribution _:601863 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:601891 a rdf:Statement ;
up:attribution _:601864 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1 .
_:601892 a rdf:Statement ;
up:attribution _:601865 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:58 .
_:601893 a rdf:Statement ;
up:attribution _:601866 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:223 .
_:601894 a rdf:Statement ;
up:attribution _:601867 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:601895 a rdf:Statement ;
up:attribution _:601868 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:601896 a rdf:Statement ;
up:attribution _:601869 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:601897 a rdf:Statement ;
up:attribution _:601870 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:601898 a rdf:Statement ;
up:attribution _:601871 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:601899 a rdf:Statement ;
up:attribution _:601872 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:601900 a rdf:Statement ;
up:attribution _:601873 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008695 .
_:601901 a rdf:Statement ;
up:attribution _:601874 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019380 .
_:601902 a rdf:Statement ;
up:source unirule:MF_01648 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:601903 a rdf:Statement ;
up:attribution _:601875 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:601904 a rdf:Statement ;
up:source unirule:MF_01648 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:601905 a rdf:Statement ;
up:attribution _:601876 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:601906 a rdf:Statement ;
up:source unirule:MF_01648 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:601907 a rdf:Statement ;
up:attribution _:601877 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:601908 a rdf:Statement ;
up:source unirule:MF_01648 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:601909 a rdf:Statement ;
up:attribution _:601878 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:601910 a rdf:Statement ;
up:source unirule:MF_01648 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:601911 a rdf:Statement ;
up:attribution _:601879 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:601912 a rdf:Statement ;
up:source unirule:MF_01648 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:601913 a rdf:Statement ;
up:attribution _:601880 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01648
#Rule MF_01648 Created by:? on:2008-04-17 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01648 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01648a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionP0ABR559 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABR561 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABR5MF_0164854 .
?templateMotifSequenceMatchRegionP0ABR559 faldo:begin ?templateMotifSequenceMatchBeginP0ABR560 .
?templateMotifSequenceMatchBeginP0ABR560 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABR555 ;
faldo:reference isoform:P0ABR5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABR561 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0164865 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABR5MF_0164856 .
?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0164864 .
?targetMotifMatchRegionMatchBeginMF_0164864 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0164857 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0164865 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABR5MF_0164854, 1, (STRLEN(?templateMotifCigarP0ABR5MF_0164854) - STRLEN(REPLACE(?templateMotifCigarP0ABR5MF_0164854, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP0ABR555) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABR5MF_0164856, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_0164856) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_0164856, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABR5MF_0164856, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_0164856) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_0164856, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0164857) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionP0ABR574 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABR576 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABR5MF_0164869 .
?templateMotifSequenceMatchRegionP0ABR574 faldo:begin ?templateMotifSequenceMatchBeginP0ABR575 .
?templateMotifSequenceMatchBeginP0ABR575 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABR570 ;
faldo:reference isoform:P0ABR5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABR576 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0164880 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABR5MF_0164871 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0164879 .
?targetMotifMatchRegionMatchBeginMF_0164879 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0164872 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0164880 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABR5MF_0164869, 1, (STRLEN(?templateMotifCigarP0ABR5MF_0164869) - STRLEN(REPLACE(?templateMotifCigarP0ABR5MF_0164869, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP0ABR570) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABR5MF_0164871, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_0164871) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_0164871, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABR5MF_0164871, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_0164871) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_0164871, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0164872) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP0ABR589 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABR591 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABR5MF_0164884 .
?templateMotifSequenceMatchRegionP0ABR589 faldo:begin ?templateMotifSequenceMatchBeginP0ABR590 .
?templateMotifSequenceMatchBeginP0ABR590 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABR585 ;
faldo:reference isoform:P0ABR5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABR591 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0164895 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABR5MF_0164886 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0164894 .
?targetMotifMatchRegionMatchBeginMF_0164894 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0164887 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0164895 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABR5MF_0164884, 1, (STRLEN(?templateMotifCigarP0ABR5MF_0164884) - STRLEN(REPLACE(?templateMotifCigarP0ABR5MF_0164884, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP0ABR585) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABR5MF_0164886, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_0164886) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_0164886, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABR5MF_0164886, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_0164886) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_0164886, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0164887) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP0ABR5104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABR5106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABR5MF_0164899 .
?templateMotifSequenceMatchRegionP0ABR5104 faldo:begin ?templateMotifSequenceMatchBeginP0ABR5105 .
?templateMotifSequenceMatchBeginP0ABR5105 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABR5100 ;
faldo:reference isoform:P0ABR5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABR5106 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01648110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABR5MF_01648101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01648109 .
?targetMotifMatchRegionMatchBeginMF_01648109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01648102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01648110 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABR5MF_0164899, 1, (STRLEN(?templateMotifCigarP0ABR5MF_0164899) - STRLEN(REPLACE(?templateMotifCigarP0ABR5MF_0164899, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP0ABR5100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABR5MF_01648101, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_01648101) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_01648101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABR5MF_01648101, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_01648101) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_01648101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_01648102) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP0ABR5119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABR5121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABR5MF_01648114 .
?templateMotifSequenceMatchRegionP0ABR5119 faldo:begin ?templateMotifSequenceMatchBeginP0ABR5120 .
?templateMotifSequenceMatchBeginP0ABR5120 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABR5115 ;
faldo:reference isoform:P0ABR5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABR5121 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01648125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABR5MF_01648116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01648124 .
?targetMotifMatchRegionMatchBeginMF_01648124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01648117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01648125 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABR5MF_01648114, 1, (STRLEN(?templateMotifCigarP0ABR5MF_01648114) - STRLEN(REPLACE(?templateMotifCigarP0ABR5MF_01648114, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP0ABR5115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABR5MF_01648116, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_01648116) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_01648116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABR5MF_01648116, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_01648116) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_01648116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01648117) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP0ABR5134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABR5136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABR5MF_01648129 .
?templateMotifSequenceMatchRegionP0ABR5134 faldo:begin ?templateMotifSequenceMatchBeginP0ABR5135 .
?templateMotifSequenceMatchBeginP0ABR5135 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABR5130 ;
faldo:reference isoform:P0ABR5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABR5136 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01648140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABR5MF_01648131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01648139 .
?targetMotifMatchRegionMatchBeginMF_01648139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01648132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01648140 edam:has_input signature:MF_01648 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABR5MF_01648129, 1, (STRLEN(?templateMotifCigarP0ABR5MF_01648129) - STRLEN(REPLACE(?templateMotifCigarP0ABR5MF_01648129, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionP0ABR5130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABR5MF_01648131, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_01648131) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_01648131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABR5MF_01648131, 1, (STRLEN(?targetMotifMatchCigarP0ABR5MF_01648131) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR5MF_01648131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01648132) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01648a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
}
"xsd:string |
