| http://purl.uniprot.org/unirules/MF_01684#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:615214 up:source unirule:MF_01684 .
_:615215 up:source unirule:MF_01684 .
_:615216 up:source unirule:MF_01684 .
_:615217 up:source unirule:MF_01684 .
_:615218 up:source unirule:MF_01684 .
_:615219 up:source unirule:MF_01684 .
_:615220 up:source unirule:MF_01684 .
_:615221 up:source unirule:MF_01684 .
_:615222 up:source unirule:MF_01684 .
_:615223 up:source unirule:MF_01684 .
_:615224 up:source unirule:MF_01684 .
_:615225 up:source unirule:MF_01684 .
_:615226 up:source unirule:MF_01684 .
_:615227 up:source unirule:MF_01684 .
_:615228 up:source unirule:MF_01684 .
_:615229 up:source unirule:MF_01684 .
_:615230 up:source unirule:MF_01684 .
_:615231 up:source unirule:MF_01684 .
_:615232 up:source unirule:MF_01684 .
_:615233 up:source unirule:MF_01684 .
_:615234 up:source unirule:MF_01684 .
_:615235 up:source unirule:MF_01684 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation11 ,
?annotation12 ;
up:classifiedWith GO:0008782 ,
GO:0008930 ,
GO:0019509 ,
keyword:28 ,
keyword:378 ,
keyword:486 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.2.2.9' ;
up:fullName "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase" ;
up:shortName 'MTA/SAH nucleosidase' ,
'MTAN' ;
rdf:type up:Structured_Name .
?name1 up:fullName "5'-deoxyadenosine nucleosidase" ;
up:shortName 'DOA nucleosidase' ,
'dAdo nucleosidase' ;
rdf:type up:Structured_Name .
?name2 up:fullName "5'-methylthioadenosine nucleosidase" ;
up:shortName 'MTA nucleosidase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'S-adenosylhomocysteine nucleosidase' ;
up:shortName 'AdoHcy nucleosidase' ,
'SAH nucleosidase' ,
'SRH nucleosidase' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'mtnN' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 up:activity ?activity10 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity10 up:catalyticActivity ;
up:enzymeClass .
?annotation11 a up:Pathway_Annotation ;
rdfs:comment "Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; S-methyl-5-thio-alpha-D-ribose 1-phosphate from S-methyl-5'-thioadenosine (hydrolase route): step 1/2." .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.' .
?case13 up:classifiedWith GO:0046124 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf ?molecule20 .
?molecule20 rdfs:label 'substrate' .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf ?molecule40 .
?molecule40 rdfs:label 'substrate' .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf ?molecule48 .
?molecule48 rdfs:label 'substrate' .
_:615236 a rdf:Statement ;
up:attribution _:615214 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:615237 a rdf:Statement ;
up:attribution _:615215 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:615238 a rdf:Statement ;
up:attribution _:615216 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:615239 a rdf:Statement ;
up:attribution _:615217 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:615240 a rdf:Statement ;
up:attribution _:615218 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:615241 a rdf:Statement ;
up:attribution _:615219 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:615242 a rdf:Statement ;
up:attribution _:615220 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:615243 a rdf:Statement ;
up:attribution _:615221 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:615244 a rdf:Statement ;
up:attribution _:615222 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:615245 a rdf:Statement ;
up:attribution _:615223 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:615246 a rdf:Statement ;
up:attribution _:615224 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:615247 a rdf:Statement ;
up:attribution _:615225 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:615248 a rdf:Statement ;
up:attribution _:615226 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:486 .
_:615249 a rdf:Statement ;
up:attribution _:615227 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008782 .
_:615250 a rdf:Statement ;
up:attribution _:615228 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008930 .
_:615251 a rdf:Statement ;
up:attribution _:615229 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019509 .
_:615252 a rdf:Statement ;
up:attribution _:615230 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046124 .
_:615253 a rdf:Statement ;
up:source unirule:MF_01684 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:615254 a rdf:Statement ;
up:attribution _:615231 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:615255 a rdf:Statement ;
up:source unirule:MF_01684 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:615256 a rdf:Statement ;
up:attribution _:615232 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:615257 a rdf:Statement ;
up:source unirule:MF_01684 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:615258 a rdf:Statement ;
up:attribution _:615233 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:615259 a rdf:Statement ;
up:source unirule:MF_01684 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:615260 a rdf:Statement ;
up:attribution _:615234 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:615261 a rdf:Statement ;
up:source unirule:MF_01684 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:615262 a rdf:Statement ;
up:attribution _:615235 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01684
#Rule MF_01684 Created by:? on:2008-11-19 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01684 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01684a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionP0AF1256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AF1258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AF12MF_0168451 .
?templateMotifSequenceMatchRegionP0AF1256 faldo:begin ?templateMotifSequenceMatchBeginP0AF1257 .
?templateMotifSequenceMatchBeginP0AF1257 faldo:position ?templateMotifSequenceMatchBeginPositionP0AF1252 ;
faldo:reference isoform:P0AF12-1 .
?templateMotifSequenceProfileAlignmentOperationP0AF1258 edam:has_input signature:MF_01684 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0168462 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AF12MF_0168453 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0168461 .
?targetMotifMatchRegionMatchBeginMF_0168461 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0168454 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0168462 edam:has_input signature:MF_01684 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AF12MF_0168451, 1, (STRLEN(?templateMotifCigarP0AF12MF_0168451) - STRLEN(REPLACE(?templateMotifCigarP0AF12MF_0168451, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP0AF1252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AF12MF_0168453, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_0168453) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_0168453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AF12MF_0168453, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_0168453) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_0168453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0168454) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AF12MF_0168451, 1, (STRLEN(?templateMotifCigarP0AF12MF_0168451) - STRLEN(REPLACE(?templateMotifCigarP0AF12MF_0168451, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP0AF1252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AF12MF_0168453, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_0168453) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_0168453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AF12MF_0168453, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_0168453) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_0168453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0168454) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse18) .
FILTER (REGEX('M[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP0AF1273 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AF1275 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AF12MF_0168468 .
?templateMotifSequenceMatchRegionP0AF1273 faldo:begin ?templateMotifSequenceMatchBeginP0AF1274 .
?templateMotifSequenceMatchBeginP0AF1274 faldo:position ?templateMotifSequenceMatchBeginPositionP0AF1269 ;
faldo:reference isoform:P0AF12-1 .
?templateMotifSequenceProfileAlignmentOperationP0AF1275 edam:has_input signature:MF_01684 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0168479 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AF12MF_0168470 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0168478 .
?targetMotifMatchRegionMatchBeginMF_0168478 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0168471 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0168479 edam:has_input signature:MF_01684 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AF12MF_0168468, 1, (STRLEN(?templateMotifCigarP0AF12MF_0168468) - STRLEN(REPLACE(?templateMotifCigarP0AF12MF_0168468, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP0AF1269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AF12MF_0168470, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_0168470) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_0168470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AF12MF_0168470, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_0168470) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_0168470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0168471) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP0AF1288 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AF1290 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AF12MF_0168483 .
?templateMotifSequenceMatchRegionP0AF1288 faldo:begin ?templateMotifSequenceMatchBeginP0AF1289 .
?templateMotifSequenceMatchBeginP0AF1289 faldo:position ?templateMotifSequenceMatchBeginPositionP0AF1284 ;
faldo:reference isoform:P0AF12-1 .
?templateMotifSequenceProfileAlignmentOperationP0AF1290 edam:has_input signature:MF_01684 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0168494 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AF12MF_0168485 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0168493 .
?targetMotifMatchRegionMatchBeginMF_0168493 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0168486 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0168494 edam:has_input signature:MF_01684 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AF12MF_0168483, 1, (STRLEN(?templateMotifCigarP0AF12MF_0168483) - STRLEN(REPLACE(?templateMotifCigarP0AF12MF_0168483, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP0AF1284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AF12MF_0168485, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_0168485) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_0168485, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AF12MF_0168485, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_0168485) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_0168485, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0168486) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP0AF12103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AF12105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AF12MF_0168498 .
?templateMotifSequenceMatchRegionP0AF12103 faldo:begin ?templateMotifSequenceMatchBeginP0AF12104 .
?templateMotifSequenceMatchBeginP0AF12104 faldo:position ?templateMotifSequenceMatchBeginPositionP0AF1299 ;
faldo:reference isoform:P0AF12-1 .
?templateMotifSequenceProfileAlignmentOperationP0AF12105 edam:has_input signature:MF_01684 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01684109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AF12MF_01684100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01684108 .
?targetMotifMatchRegionMatchBeginMF_01684108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01684101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01684109 edam:has_input signature:MF_01684 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AF12MF_0168498, 1, (STRLEN(?templateMotifCigarP0AF12MF_0168498) - STRLEN(REPLACE(?templateMotifCigarP0AF12MF_0168498, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP0AF1299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AF12MF_01684100, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_01684100) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_01684100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AF12MF_01684100, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_01684100) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_01684100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01684101) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse38) .
FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP0AF12118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AF12120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AF12MF_01684113 .
?templateMotifSequenceMatchRegionP0AF12118 faldo:begin ?templateMotifSequenceMatchBeginP0AF12119 .
?templateMotifSequenceMatchBeginP0AF12119 faldo:position ?templateMotifSequenceMatchBeginPositionP0AF12114 ;
faldo:reference isoform:P0AF12-1 .
?templateMotifSequenceProfileAlignmentOperationP0AF12120 edam:has_input signature:MF_01684 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01684124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AF12MF_01684115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01684123 .
?targetMotifMatchRegionMatchBeginMF_01684123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01684116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01684124 edam:has_input signature:MF_01684 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AF12MF_01684113, 1, (STRLEN(?templateMotifCigarP0AF12MF_01684113) - STRLEN(REPLACE(?templateMotifCigarP0AF12MF_01684113, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP0AF12114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AF12MF_01684115, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_01684115) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_01684115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AF12MF_01684115, 1, (STRLEN(?targetMotifMatchCigarP0AF12MF_01684115) - STRLEN(REPLACE(?targetMotifMatchCigarP0AF12MF_01684115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01684116) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse46) .
FILTER (REGEX('[IVML]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01684a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:91347 .
})) .
BIND(?this AS ?case14) .
}
}
"xsd:string |
