| http://purl.uniprot.org/unirules/MF_01685#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:615663 up:source unirule:MF_01685 .
_:615664 up:source unirule:MF_01685 .
_:615665 up:source unirule:MF_01685 .
_:615666 up:source unirule:MF_01685 .
_:615667 up:source unirule:MF_01685 .
_:615668 up:source unirule:MF_01685 .
_:615669 up:source unirule:MF_01685 .
_:615670 up:source unirule:MF_01685 .
_:615671 up:source unirule:MF_01685 .
_:615672 up:source unirule:MF_01685 .
_:615673 up:source unirule:MF_01685 .
_:615674 up:source unirule:MF_01685 .
_:615675 up:source unirule:MF_01685 .
_:615676 up:source unirule:MF_01685 .
_:615677 up:source unirule:MF_01685 .
_:615678 up:source unirule:MF_01685 .
_:615679 up:source unirule:MF_01685 .
_:615680 up:source unirule:MF_01685 .
_:615681 up:source unirule:MF_01685 .
_:615682 up:source unirule:MF_01685 .
_:615683 up:source unirule:MF_01685 .
?this up:annotation ?annotation1 ,
?annotation3 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0004324 ,
GO:0050660 ,
GO:0050661 ,
keyword:274 ,
keyword:285 ,
keyword:521 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.18.1.2' ;
up:fullName 'Ferredoxin--NADP reductase' ;
up:shortName 'FNR' ,
'Fd-NADP(+) reductase' ;
rdf:type up:Structured_Name .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 FAD per subunit.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ferredoxin--NADP reductase type 2 family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
up:ligand ?ligand10 ;
rdf:type up:Binding_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?ligand10 rdfs:subClassOf chebi:57692 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:57692 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:57692 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:57692 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:57692 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:57692 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:57692 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:57692 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:57692 .
_:615684 a rdf:Statement ;
up:attribution _:615663 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:615685 a rdf:Statement ;
up:attribution _:615664 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:615686 a rdf:Statement ;
up:attribution _:615665 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:615687 a rdf:Statement ;
up:attribution _:615666 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:615688 a rdf:Statement ;
up:attribution _:615667 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:615689 a rdf:Statement ;
up:attribution _:615668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:615690 a rdf:Statement ;
up:attribution _:615669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:615691 a rdf:Statement ;
up:attribution _:615670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:615692 a rdf:Statement ;
up:attribution _:615671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:615693 a rdf:Statement ;
up:attribution _:615672 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050660 .
_:615694 a rdf:Statement ;
up:attribution _:615673 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050661 .
_:615695 a rdf:Statement ;
up:attribution _:615674 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004324 .
_:615696 a rdf:Statement ;
up:source unirule:MF_01685 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:615697 a rdf:Statement ;
up:attribution _:615675 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:615698 a rdf:Statement ;
up:source unirule:MF_01685 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:615699 a rdf:Statement ;
up:attribution _:615676 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:615700 a rdf:Statement ;
up:source unirule:MF_01685 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:615701 a rdf:Statement ;
up:attribution _:615677 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:615702 a rdf:Statement ;
up:source unirule:MF_01685 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:615703 a rdf:Statement ;
up:attribution _:615678 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:615704 a rdf:Statement ;
up:source unirule:MF_01685 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:615705 a rdf:Statement ;
up:attribution _:615679 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:615706 a rdf:Statement ;
up:source unirule:MF_01685 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:615707 a rdf:Statement ;
up:attribution _:615680 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:615708 a rdf:Statement ;
up:source unirule:MF_01685 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:615709 a rdf:Statement ;
up:attribution _:615681 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:615710 a rdf:Statement ;
up:source unirule:MF_01685 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:615711 a rdf:Statement ;
up:attribution _:615682 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:615712 a rdf:Statement ;
up:source unirule:MF_01685 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:615713 a rdf:Statement ;
up:attribution _:615683 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01685
#Rule MF_01685 Created by:? on:2009-01-22 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon69 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01685 .
?thisOrganism rdfs:subClassOf+ ?supertaxon69 .
BIND(URI(CONCAT(STR(?this), '#MF_01685a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionQ5SL2875 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SL2877 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SL28MF_0168570 .
?templateMotifSequenceMatchRegionQ5SL2875 faldo:begin ?templateMotifSequenceMatchBeginQ5SL2876 .
?templateMotifSequenceMatchBeginQ5SL2876 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SL2871 ;
faldo:reference isoform:Q5SL28-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SL2877 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0168581 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SL28MF_0168572 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0168580 .
?targetMotifMatchRegionMatchBeginMF_0168580 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0168573 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0168581 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SL28MF_0168570, 1, (STRLEN(?templateMotifCigarQ5SL28MF_0168570) - STRLEN(REPLACE(?templateMotifCigarQ5SL28MF_0168570, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionQ5SL2871) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SL28MF_0168572, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_0168572) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_0168572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SL28MF_0168572, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_0168572) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_0168572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0168573) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) .
FILTER (REGEX('[CST]', SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionQ5SL2890 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SL2892 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SL28MF_0168585 .
?templateMotifSequenceMatchRegionQ5SL2890 faldo:begin ?templateMotifSequenceMatchBeginQ5SL2891 .
?templateMotifSequenceMatchBeginQ5SL2891 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SL2886 ;
faldo:reference isoform:Q5SL28-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SL2892 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0168596 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SL28MF_0168587 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0168595 .
?targetMotifMatchRegionMatchBeginMF_0168595 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0168588 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0168596 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SL28MF_0168585, 1, (STRLEN(?templateMotifCigarQ5SL28MF_0168585) - STRLEN(REPLACE(?templateMotifCigarQ5SL28MF_0168585, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionQ5SL2886) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SL28MF_0168587, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_0168587) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_0168587, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SL28MF_0168587, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_0168587) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_0168587, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0168588) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionQ5SL28105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SL28107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SL28MF_01685100 .
?templateMotifSequenceMatchRegionQ5SL28105 faldo:begin ?templateMotifSequenceMatchBeginQ5SL28106 .
?templateMotifSequenceMatchBeginQ5SL28106 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SL28101 ;
faldo:reference isoform:Q5SL28-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SL28107 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01685111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SL28MF_01685102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01685110 .
?targetMotifMatchRegionMatchBeginMF_01685110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01685103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01685111 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SL28MF_01685100, 1, (STRLEN(?templateMotifCigarQ5SL28MF_01685100) - STRLEN(REPLACE(?templateMotifCigarQ5SL28MF_01685100, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionQ5SL28101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685102, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685102) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685102, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685102) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01685103) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER (REGEX('[KQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionQ5SL28120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SL28122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SL28MF_01685115 .
?templateMotifSequenceMatchRegionQ5SL28120 faldo:begin ?templateMotifSequenceMatchBeginQ5SL28121 .
?templateMotifSequenceMatchBeginQ5SL28121 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SL28116 ;
faldo:reference isoform:Q5SL28-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SL28122 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01685126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SL28MF_01685117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01685125 .
?targetMotifMatchRegionMatchBeginMF_01685125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01685118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01685126 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SL28MF_01685115, 1, (STRLEN(?templateMotifCigarQ5SL28MF_01685115) - STRLEN(REPLACE(?templateMotifCigarQ5SL28MF_01685115, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionQ5SL28116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685117, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685117) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685117, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685117) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01685118) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER (REGEX('[FY]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionQ5SL28135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SL28137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SL28MF_01685130 .
?templateMotifSequenceMatchRegionQ5SL28135 faldo:begin ?templateMotifSequenceMatchBeginQ5SL28136 .
?templateMotifSequenceMatchBeginQ5SL28136 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SL28131 ;
faldo:reference isoform:Q5SL28-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SL28137 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01685141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SL28MF_01685132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01685140 .
?targetMotifMatchRegionMatchBeginMF_01685140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01685133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01685141 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SL28MF_01685130, 1, (STRLEN(?templateMotifCigarQ5SL28MF_01685130) - STRLEN(REPLACE(?templateMotifCigarQ5SL28MF_01685130, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionQ5SL28131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685132, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685132) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685132, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685132) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01685133) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER (REGEX('[AIKLMNRSV]', SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionQ5SL28150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SL28152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SL28MF_01685145 .
?templateMotifSequenceMatchRegionQ5SL28150 faldo:begin ?templateMotifSequenceMatchBeginQ5SL28151 .
?templateMotifSequenceMatchBeginQ5SL28151 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SL28146 ;
faldo:reference isoform:Q5SL28-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SL28152 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01685156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SL28MF_01685147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01685155 .
?targetMotifMatchRegionMatchBeginMF_01685155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01685148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01685156 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SL28MF_01685145, 1, (STRLEN(?templateMotifCigarQ5SL28MF_01685145) - STRLEN(REPLACE(?templateMotifCigarQ5SL28MF_01685145, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionQ5SL28146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685147, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685147) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685147, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685147) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_01685148) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER (REGEX('[CFILM]', SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ5SL28165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SL28167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SL28MF_01685160 .
?templateMotifSequenceMatchRegionQ5SL28165 faldo:begin ?templateMotifSequenceMatchBeginQ5SL28166 .
?templateMotifSequenceMatchBeginQ5SL28166 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SL28161 ;
faldo:reference isoform:Q5SL28-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SL28167 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01685171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SL28MF_01685162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01685170 .
?targetMotifMatchRegionMatchBeginMF_01685170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01685163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01685171 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SL28MF_01685160, 1, (STRLEN(?templateMotifCigarQ5SL28MF_01685160) - STRLEN(REPLACE(?templateMotifCigarQ5SL28MF_01685160, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionQ5SL28161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685162, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685162) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685162, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685162) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01685163) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER (REGEX('[P]', SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionQ5SL28180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SL28182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SL28MF_01685175 .
?templateMotifSequenceMatchRegionQ5SL28180 faldo:begin ?templateMotifSequenceMatchBeginQ5SL28181 .
?templateMotifSequenceMatchBeginQ5SL28181 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SL28176 ;
faldo:reference isoform:Q5SL28-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SL28182 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01685186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SL28MF_01685177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01685185 .
?targetMotifMatchRegionMatchBeginMF_01685185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01685178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01685186 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SL28MF_01685175, 1, (STRLEN(?templateMotifCigarQ5SL28MF_01685175) - STRLEN(REPLACE(?templateMotifCigarQ5SL28MF_01685175, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionQ5SL28176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685177, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685177) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685177, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685177) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_01685178) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionQ5SL28195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SL28197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SL28MF_01685190 .
?templateMotifSequenceMatchRegionQ5SL28195 faldo:begin ?templateMotifSequenceMatchBeginQ5SL28196 .
?templateMotifSequenceMatchBeginQ5SL28196 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SL28191 ;
faldo:reference isoform:Q5SL28-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SL28197 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01685201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SL28MF_01685192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01685200 .
?targetMotifMatchRegionMatchBeginMF_01685200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01685193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01685201 edam:has_input signature:MF_01685 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SL28MF_01685190, 1, (STRLEN(?templateMotifCigarQ5SL28MF_01685190) - STRLEN(REPLACE(?templateMotifCigarQ5SL28MF_01685190, CONCAT('^(?:-*[^-]){', STR(((328 - ?templateMotifSequenceMatchBeginPositionQ5SL28191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685192, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685192) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SL28MF_01685192, 1, (STRLEN(?targetMotifMatchCigarQ5SL28MF_01685192) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SL28MF_01685192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01685193) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01685a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
}
"xsd:string |
