| http://purl.uniprot.org/unirules/MF_01820#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:638352 up:source unirule:MF_01820 .
_:638353 up:source unirule:MF_01820 .
_:638354 up:source unirule:MF_01820 .
_:638355 up:source unirule:MF_01820 .
_:638356 up:source unirule:MF_01820 .
_:638357 up:source unirule:MF_01820 .
_:638358 up:source unirule:MF_01820 .
_:638359 up:source unirule:MF_01820 .
_:638360 up:source unirule:MF_01820 .
_:638361 up:source unirule:MF_01820 .
_:638362 up:source unirule:MF_01820 .
_:638363 up:source unirule:MF_01820 .
_:638364 up:source unirule:MF_01820 .
_:638365 up:source unirule:MF_01820 .
_:638366 up:source unirule:MF_01820 .
_:638367 up:source unirule:MF_01820 .
_:638368 up:source unirule:MF_01820 .
_:638369 up:source unirule:MF_01820 .
_:638370 up:source unirule:MF_01820 .
_:638371 up:source unirule:MF_01820 .
_:638372 up:source unirule:MF_01820 .
_:638373 up:source unirule:MF_01820 .
_:638374 up:source unirule:MF_01820 .
_:638375 up:source unirule:MF_01820 .
_:638376 up:source unirule:MF_01820 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0003924 ,
GO:0005525 ,
GO:0005737 ,
GO:0042274 ,
keyword:342 ,
keyword:378 ,
keyword:547 ,
keyword:690 ,
keyword:694 ,
keyword:699 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.6.1.-' ;
up:fullName 'Small ribosomal subunit biogenesis GTPase RsgA' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'rsgA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Monomer. Associates with 30S ribosomal subunit, binds 16S rRNA.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.' .
?case7 up:classifiedWith keyword:479 ,
keyword:862 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:29105 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29105 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29105 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29105 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:37565 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:37565 .
_:638377 a rdf:Statement ;
up:attribution _:638352 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:638378 a rdf:Statement ;
up:attribution _:638353 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:638379 a rdf:Statement ;
up:attribution _:638354 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:638380 a rdf:Statement ;
up:attribution _:638355 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:638381 a rdf:Statement ;
up:attribution _:638356 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:638382 a rdf:Statement ;
up:attribution _:638357 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:638383 a rdf:Statement ;
up:attribution _:638358 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:638384 a rdf:Statement ;
up:attribution _:638359 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:638385 a rdf:Statement ;
up:attribution _:638360 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:638386 a rdf:Statement ;
up:attribution _:638361 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:638387 a rdf:Statement ;
up:attribution _:638362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:690 .
_:638388 a rdf:Statement ;
up:attribution _:638363 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:638389 a rdf:Statement ;
up:attribution _:638364 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:699 .
_:638390 a rdf:Statement ;
up:attribution _:638365 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003924 .
_:638391 a rdf:Statement ;
up:attribution _:638366 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:638392 a rdf:Statement ;
up:attribution _:638367 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:638393 a rdf:Statement ;
up:attribution _:638368 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042274 .
_:638394 a rdf:Statement ;
up:attribution _:638369 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:638395 a rdf:Statement ;
up:attribution _:638370 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:638396 a rdf:Statement ;
up:source unirule:MF_01820 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:638397 a rdf:Statement ;
up:attribution _:638371 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:638398 a rdf:Statement ;
up:source unirule:MF_01820 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:638399 a rdf:Statement ;
up:attribution _:638372 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:638400 a rdf:Statement ;
up:source unirule:MF_01820 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:638401 a rdf:Statement ;
up:attribution _:638373 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:638402 a rdf:Statement ;
up:source unirule:MF_01820 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:638403 a rdf:Statement ;
up:attribution _:638374 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:638404 a rdf:Statement ;
up:source unirule:MF_01820 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:638405 a rdf:Statement ;
up:attribution _:638375 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:638406 a rdf:Statement ;
up:source unirule:MF_01820 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:638407 a rdf:Statement ;
up:attribution _:638376 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01820
#Rule MF_01820 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon47 {taxon:2 taxon:94695}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01820 .
?thisOrganism rdfs:subClassOf+ ?supertaxon47 .
BIND(URI(CONCAT(STR(?this), '#MF_01820a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01820a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01820a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01820a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01820a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionQ8ZKB053 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKB055 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKB0MF_0182048 .
?templateMotifSequenceMatchRegionQ8ZKB053 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKB054 .
?templateMotifSequenceMatchBeginQ8ZKB054 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKB049 ;
faldo:reference isoform:Q8ZKB0-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKB055 edam:has_input signature:MF_01820 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0182059 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKB0MF_0182050 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0182058 .
?targetMotifMatchRegionMatchBeginMF_0182058 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0182051 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0182059 edam:has_input signature:MF_01820 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKB0MF_0182048, 1, (STRLEN(?templateMotifCigarQ8ZKB0MF_0182048) - STRLEN(REPLACE(?templateMotifCigarQ8ZKB0MF_0182048, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionQ8ZKB049) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182050, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182050, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0182051) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKB0MF_0182048, 1, (STRLEN(?templateMotifCigarQ8ZKB0MF_0182048) - STRLEN(REPLACE(?templateMotifCigarQ8ZKB0MF_0182048, CONCAT('^(?:-*[^-]){', STR(((302 - ?templateMotifSequenceMatchBeginPositionQ8ZKB049) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182050, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182050, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0182051) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKB0MF_0182048, 1, (STRLEN(?templateMotifCigarQ8ZKB0MF_0182048) - STRLEN(REPLACE(?templateMotifCigarQ8ZKB0MF_0182048, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionQ8ZKB049) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182050, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182050, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0182051) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKB0MF_0182048, 1, (STRLEN(?templateMotifCigarQ8ZKB0MF_0182048) - STRLEN(REPLACE(?templateMotifCigarQ8ZKB0MF_0182048, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionQ8ZKB049) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182050, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182050, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0182051) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionQ8ZKB077 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKB079 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKB0MF_0182072 .
?templateMotifSequenceMatchRegionQ8ZKB077 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKB078 .
?templateMotifSequenceMatchBeginQ8ZKB078 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKB073 ;
faldo:reference isoform:Q8ZKB0-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKB079 edam:has_input signature:MF_01820 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0182083 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKB0MF_0182074 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0182082 .
?targetMotifMatchRegionMatchBeginMF_0182082 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0182075 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0182083 edam:has_input signature:MF_01820 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKB0MF_0182072, 1, (STRLEN(?templateMotifCigarQ8ZKB0MF_0182072) - STRLEN(REPLACE(?templateMotifCigarQ8ZKB0MF_0182072, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionQ8ZKB073) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182074, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182074) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182074, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182074, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182074) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182074, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0182075) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKB0MF_0182072, 1, (STRLEN(?templateMotifCigarQ8ZKB0MF_0182072) - STRLEN(REPLACE(?templateMotifCigarQ8ZKB0MF_0182072, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionQ8ZKB073) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182074, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182074) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182074, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182074, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182074) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182074, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0182075) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER (REGEX('[NTSA]K[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01820a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionQ8ZKB094 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKB096 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKB0MF_0182089 .
?templateMotifSequenceMatchRegionQ8ZKB094 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKB095 .
?templateMotifSequenceMatchBeginQ8ZKB095 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKB090 ;
faldo:reference isoform:Q8ZKB0-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKB096 edam:has_input signature:MF_01820 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01820100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKB0MF_0182091 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0182099 .
?targetMotifMatchRegionMatchBeginMF_0182099 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0182092 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01820100 edam:has_input signature:MF_01820 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKB0MF_0182089, 1, (STRLEN(?templateMotifCigarQ8ZKB0MF_0182089) - STRLEN(REPLACE(?templateMotifCigarQ8ZKB0MF_0182089, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ8ZKB090) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182091, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182091) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182091, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182091, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182091) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182091, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0182092) - 1) AS ?thisPositionOn45) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKB0MF_0182089, 1, (STRLEN(?templateMotifCigarQ8ZKB0MF_0182089) - STRLEN(REPLACE(?templateMotifCigarQ8ZKB0MF_0182089, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionQ8ZKB090) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182091, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182091) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182091, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKB0MF_0182091, 1, (STRLEN(?targetMotifMatchCigarQ8ZKB0MF_0182091) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKB0MF_0182091, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0182092) - 1) AS ?thisPositionOn46) .
BIND(?this AS ?pfs2t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER (REGEX('[AG][ARNDCQEGHILKMFPSTWYVBZJUOX]{4)GK[ST][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn45, (?thisPositionOn46 - ?thisPositionOn45)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01820a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag106) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag106, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
