| http://purl.uniprot.org/unirules/MF_01865#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:652933 up:source unirule:MF_01865 .
_:652934 up:source unirule:MF_01865 .
_:652935 up:source unirule:MF_01865 .
_:652936 up:source unirule:MF_01865 .
_:652937 up:source unirule:MF_01865 .
_:652938 up:source unirule:MF_01865 .
_:652939 up:source unirule:MF_01865 .
_:652940 up:source unirule:MF_01865 .
_:652941 up:source unirule:MF_01865 .
_:652942 up:source unirule:MF_01865 .
_:652943 up:source unirule:MF_01865 .
_:652944 up:source unirule:MF_01865 .
_:652945 up:source unirule:MF_01865 .
_:652946 up:source unirule:MF_01865 .
_:652947 up:source unirule:MF_01865 .
_:652948 up:source unirule:MF_01865 .
_:652949 up:source unirule:MF_01865 .
_:652950 up:source unirule:MF_01865 .
_:652951 up:source unirule:MF_01865 .
_:652952 up:source unirule:MF_01865 .
_:652953 up:source unirule:MF_01865 .
_:652954 up:source unirule:MF_01865 .
_:652955 up:source unirule:MF_01865 .
_:652956 up:source unirule:MF_01865 .
_:652957 up:source unirule:MF_01865 .
_:652958 up:source unirule:MF_01865 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0005737 ,
GO:0016740 ,
GO:0018339 ,
GO:0051539 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.8.4.4' ;
up:fullName 'Ribosomal protein uS12 methylthiotransferase RimO' ;
up:shortName 'uS12 MTTase' ,
'uS12 methylthiotransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Ribosomal protein uS12 (aspartate-C(3))-methylthiotransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Ribosome maturation factor RimO' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'rimO' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein uS12.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the methylthiotransferase family. RimO subfamily.' .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:49883 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:49883 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:49883 .
?pfs30 up:annotation ?annotation31 ,
?annotation37 ,
?annotation43 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:49883 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:49883 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:49883 .
_:652959 a rdf:Statement ;
up:attribution _:652933 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:652960 a rdf:Statement ;
up:attribution _:652934 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:652961 a rdf:Statement ;
up:attribution _:652935 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:652962 a rdf:Statement ;
up:attribution _:652936 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:652963 a rdf:Statement ;
up:attribution _:652937 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:652964 a rdf:Statement ;
up:attribution _:652938 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:652965 a rdf:Statement ;
up:attribution _:652939 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:652966 a rdf:Statement ;
up:attribution _:652940 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:652967 a rdf:Statement ;
up:attribution _:652941 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:652968 a rdf:Statement ;
up:attribution _:652942 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:652969 a rdf:Statement ;
up:attribution _:652943 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:652970 a rdf:Statement ;
up:attribution _:652944 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:652971 a rdf:Statement ;
up:attribution _:652945 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:652972 a rdf:Statement ;
up:attribution _:652946 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:652973 a rdf:Statement ;
up:attribution _:652947 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:652974 a rdf:Statement ;
up:attribution _:652948 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:652975 a rdf:Statement ;
up:attribution _:652949 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016740 .
_:652976 a rdf:Statement ;
up:attribution _:652950 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:652977 a rdf:Statement ;
up:attribution _:652951 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018339 .
_:652978 a rdf:Statement ;
up:attribution _:652952 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:652979 a rdf:Statement ;
up:source unirule:MF_01865 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:652980 a rdf:Statement ;
up:attribution _:652953 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:652981 a rdf:Statement ;
up:source unirule:MF_01865 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:652982 a rdf:Statement ;
up:attribution _:652954 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:652983 a rdf:Statement ;
up:source unirule:MF_01865 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:652984 a rdf:Statement ;
up:attribution _:652955 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:652985 a rdf:Statement ;
up:source unirule:MF_01865 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:652986 a rdf:Statement ;
up:attribution _:652956 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:652987 a rdf:Statement ;
up:source unirule:MF_01865 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:652988 a rdf:Statement ;
up:attribution _:652957 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:652989 a rdf:Statement ;
up:source unirule:MF_01865 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:652990 a rdf:Statement ;
up:attribution _:652958 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01865
#Rule MF_01865 Created by:? on:2009-04-15 Modified by:Elisabeth Coudert on:2024-12-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01865 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01865a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01865a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01865a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01865a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01865a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01865a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01865a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01865a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionP0AEI454 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEI456 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEI4MF_0186549 .
?templateMotifSequenceMatchRegionP0AEI454 faldo:begin ?templateMotifSequenceMatchBeginP0AEI455 .
?templateMotifSequenceMatchBeginP0AEI455 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEI450 ;
faldo:reference isoform:P0AEI4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEI456 edam:has_input signature:MF_01865 ;
rdf:type edam:operation_0300 .
?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0186560 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEI4MF_0186551 .
?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0186559 .
?targetMotifMatchRegionMatchBeginMF_0186559 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0186552 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0186560 edam:has_input signature:MF_01865 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEI4MF_0186549, 1, (STRLEN(?templateMotifCigarP0AEI4MF_0186549) - STRLEN(REPLACE(?templateMotifCigarP0AEI4MF_0186549, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP0AEI450) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186551, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186551) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186551, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186551, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186551) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186551, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0186552) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEI4MF_0186549, 1, (STRLEN(?templateMotifCigarP0AEI4MF_0186549) - STRLEN(REPLACE(?templateMotifCigarP0AEI4MF_0186549, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP0AEI450) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186551, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186551) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186551, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186551, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186551) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186551, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0186552) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEI4MF_0186549, 1, (STRLEN(?templateMotifCigarP0AEI4MF_0186549) - STRLEN(REPLACE(?templateMotifCigarP0AEI4MF_0186549, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP0AEI450) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186551, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186551) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186551, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186551, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186551) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186551, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0186552) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionP0AEI475 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEI477 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEI4MF_0186570 .
?templateMotifSequenceMatchRegionP0AEI475 faldo:begin ?templateMotifSequenceMatchBeginP0AEI476 .
?templateMotifSequenceMatchBeginP0AEI476 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEI471 ;
faldo:reference isoform:P0AEI4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEI477 edam:has_input signature:MF_01865 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0186581 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEI4MF_0186572 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0186580 .
?targetMotifMatchRegionMatchBeginMF_0186580 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0186573 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0186581 edam:has_input signature:MF_01865 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEI4MF_0186570, 1, (STRLEN(?templateMotifCigarP0AEI4MF_0186570) - STRLEN(REPLACE(?templateMotifCigarP0AEI4MF_0186570, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP0AEI471) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186572, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186572) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186572, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186572) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0186573) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs2t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEI4MF_0186570, 1, (STRLEN(?templateMotifCigarP0AEI4MF_0186570) - STRLEN(REPLACE(?templateMotifCigarP0AEI4MF_0186570, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP0AEI471) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186572, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186572) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186572, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186572) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0186573) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEI4MF_0186570, 1, (STRLEN(?templateMotifCigarP0AEI4MF_0186570) - STRLEN(REPLACE(?templateMotifCigarP0AEI4MF_0186570, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP0AEI471) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186572, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186572) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEI4MF_0186572, 1, (STRLEN(?targetMotifMatchCigarP0AEI4MF_0186572) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEI4MF_0186572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0186573) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'C')) .
BIND(?this AS ?pfs30) .
}
}
"xsd:string |
