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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-134 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-158 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-132 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-133 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-157 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-112 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-136 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-159 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-135 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-153 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-152 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-131 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-156 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-130 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-154 |
| http://purl.uniprot.org/unirules/MF_01884#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01884#construct-template-155 |
| http://purl.uniprot.org/unirules/MF_01884#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01884#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01884#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01884#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01884#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01884#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:659337 up:source unirule:MF_01884 . _:659338 up:source unirule:MF_01884 . _:659339 up:source unirule:MF_01884 . _:659340 up:source unirule:MF_01884 . _:659341 up:source unirule:MF_01884 . _:659342 up:source unirule:MF_01884 . _:659343 up:source unirule:MF_01884 . _:659344 up:source unirule:MF_01884 . _:659345 up:source unirule:MF_01884 . _:659346 up:source unirule:MF_01884 . _:659347 up:source unirule:MF_01884 . _:659348 up:source unirule:MF_01884 . _:659349 up:source unirule:MF_01884 . _:659350 up:source unirule:MF_01884 . _:659351 up:source unirule:MF_01884 . _:659352 up:source unirule:MF_01884 . _:659353 up:source unirule:MF_01884 . _:659354 up:source unirule:MF_01884 . _:659355 up:source unirule:MF_01884 . _:659356 up:source unirule:MF_01884 . _:659357 up:source unirule:MF_01884 . _:659358 up:source unirule:MF_01884 . _:659359 up:source unirule:MF_01884 . _:659360 up:source unirule:MF_01884 . _:659361 up:source unirule:MF_01884 . _:659362 up:source unirule:MF_01884 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0003723 , GO:0004386 , GO:0005524 , GO:0006353 , keyword:347 , keyword:378 , keyword:547 , keyword:67 , keyword:694 , keyword:804 , keyword:805 , keyword:806 ; up:recommendedName ?name0 . ?name0 up:ecName '3.6.4.-' ; up:fullName 'Transcription termination factor Rho' ; rdf:type up:Structured_Name . ?name1 up:fullName 'ATP-dependent helicase Rho' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'rho' . ?annotation3 a up:Function_Annotation ; rdfs:comment "Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template." . ?annotation4 a up:Subunit_Annotation ; rdfs:comment 'Homohexamer. The homohexamer assembles into an open ring structure.' . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Rho family.' . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; up:ligand ?ligand10 ; rdf:type up:Binding_Site_Annotation . ?pfsb8 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?ligand10 rdfs:subClassOf chebi:30616 . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:30616 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:30616 . ?pfs27 up:annotation ?annotation28 , ?annotation33 , ?annotation38 , ?annotation43 , ?annotation48 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; rdf:type up:Region_Annotation ; rdfs:comment 'RNA-binding 1' . ?pfsb29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Region_Annotation ; rdfs:comment 'RNA-binding 1' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; rdf:type up:Region_Annotation ; rdfs:comment 'RNA-binding 1' . ?pfsb39 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; rdf:type up:Region_Annotation ; rdfs:comment 'RNA-binding 2' . ?pfsb44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; rdf:type up:Site_Annotation ; rdfs:comment 'RNA-binding 2' . ?pfsb49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . _:659363 a rdf:Statement ; up:attribution _:659337 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:659364 a rdf:Statement ; up:attribution _:659338 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:659365 a rdf:Statement ; up:attribution _:659339 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:659366 a rdf:Statement ; up:attribution _:659340 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:659367 a rdf:Statement ; up:attribution _:659341 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:659368 a rdf:Statement ; up:attribution _:659342 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:659369 a rdf:Statement ; up:attribution _:659343 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:659370 a rdf:Statement ; up:attribution _:659344 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:347 . _:659371 a rdf:Statement ; up:attribution _:659345 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:659372 a rdf:Statement ; up:attribution _:659346 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:659373 a rdf:Statement ; up:attribution _:659347 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:659374 a rdf:Statement ; up:attribution _:659348 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:659375 a rdf:Statement ; up:attribution _:659349 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:659376 a rdf:Statement ; up:attribution _:659350 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:806 . _:659377 a rdf:Statement ; up:attribution _:659351 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:659378 a rdf:Statement ; up:attribution _:659352 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004386 . _:659379 a rdf:Statement ; up:attribution _:659353 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003723 . _:659380 a rdf:Statement ; up:attribution _:659354 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006353 . _:659381 a rdf:Statement ; up:source unirule:MF_01884 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:659382 a rdf:Statement ; up:attribution _:659355 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:659383 a rdf:Statement ; up:source unirule:MF_01884 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:659384 a rdf:Statement ; up:attribution _:659356 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:659385 a rdf:Statement ; up:source unirule:MF_01884 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:659386 a rdf:Statement ; up:attribution _:659357 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:659387 a rdf:Statement ; up:source unirule:MF_01884 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:659388 a rdf:Statement ; up:attribution _:659358 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:659389 a rdf:Statement ; up:source unirule:MF_01884 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:659390 a rdf:Statement ; up:attribution _:659359 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:659391 a rdf:Statement ; up:source unirule:MF_01884 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:659392 a rdf:Statement ; up:attribution _:659360 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:659393 a rdf:Statement ; up:source unirule:MF_01884 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:659394 a rdf:Statement ; up:attribution _:659361 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:659395 a rdf:Statement ; up:source unirule:MF_01884 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:659396 a rdf:Statement ; up:attribution _:659362 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01884 #Rule MF_01884 Created by:? on:2010-08-04 Modified by:Edouard de Castro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01884 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_01884a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01884a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01884a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01884a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01884a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionP0AG3058 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AG3060 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AG30MF_0188453 . ?templateMotifSequenceMatchRegionP0AG3058 faldo:begin ?templateMotifSequenceMatchBeginP0AG3059 . ?templateMotifSequenceMatchBeginP0AG3059 faldo:position ?templateMotifSequenceMatchBeginPositionP0AG3054 ; faldo:reference isoform:P0AG30-1 . ?templateMotifSequenceProfileAlignmentOperationP0AG3060 edam:has_input signature:MF_01884 ; rdf:type edam:operation_0300 . ?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188464 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AG30MF_0188455 . ?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188463 . ?targetMotifMatchRegionMatchBeginMF_0188463 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188456 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0188464 edam:has_input signature:MF_01884 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_0188453, 1, (STRLEN(?templateMotifCigarP0AG30MF_0188453) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_0188453, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP0AG3054) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_0188455, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_0188455) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_0188455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_0188455, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_0188455) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_0188455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) . BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0188456) - 1) AS ?thisPositionOn11) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_0188453, 1, (STRLEN(?templateMotifCigarP0AG30MF_0188453) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_0188453, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP0AG3054) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_0188455, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_0188455) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_0188455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_0188455, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_0188455) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_0188455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) . BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0188456) - 1) AS ?thisPositionOn12) . BIND(?this AS ?pfs1t69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][GAS]', SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)))) . BIND(URI(CONCAT(STR(?this), '#MF_01884a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionP0AG3075 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AG3077 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AG30MF_0188470 . ?templateMotifSequenceMatchRegionP0AG3075 faldo:begin ?templateMotifSequenceMatchBeginP0AG3076 . ?templateMotifSequenceMatchBeginP0AG3076 faldo:position ?templateMotifSequenceMatchBeginPositionP0AG3071 ; faldo:reference isoform:P0AG30-1 . ?templateMotifSequenceProfileAlignmentOperationP0AG3077 edam:has_input signature:MF_01884 ; rdf:type edam:operation_0300 . ?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188481 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AG30MF_0188472 . ?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188480 . ?targetMotifMatchRegionMatchBeginMF_0188480 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188473 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0188481 edam:has_input signature:MF_01884 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_0188470, 1, (STRLEN(?templateMotifCigarP0AG30MF_0188470) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_0188470, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP0AG3071) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_0188472, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_0188472) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_0188472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_0188472, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_0188472) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_0188472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) . BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0188473) - 1) AS ?thisPositionOn18) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_0188470, 1, (STRLEN(?templateMotifCigarP0AG30MF_0188470) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_0188470, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionP0AG3071) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_0188472, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_0188472) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_0188472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_0188472, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_0188472) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_0188472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) . BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0188473) - 1) AS ?thisPositionOn19) . BIND(?this AS ?pfs1t86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER (REGEX('[KR][ARNDCQEGHILKMFPSTWYVBZJUOX]GK[TS][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) . BIND(URI(CONCAT(STR(?this), '#MF_01884a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionP0AG3092 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AG3094 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AG30MF_0188487 . ?templateMotifSequenceMatchRegionP0AG3092 faldo:begin ?templateMotifSequenceMatchBeginP0AG3093 . ?templateMotifSequenceMatchBeginP0AG3093 faldo:position ?templateMotifSequenceMatchBeginPositionP0AG3088 ; faldo:reference isoform:P0AG30-1 . ?templateMotifSequenceProfileAlignmentOperationP0AG3094 edam:has_input signature:MF_01884 ; rdf:type edam:operation_0300 . ?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188498 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AG30MF_0188489 . ?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188497 . ?targetMotifMatchRegionMatchBeginMF_0188497 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188490 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0188498 edam:has_input signature:MF_01884 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_0188487, 1, (STRLEN(?templateMotifCigarP0AG30MF_0188487) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_0188487, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP0AG3088) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_0188489, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_0188489) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_0188489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_0188489, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_0188489) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_0188489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0188490) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01884a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP0AG30107 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AG30109 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AG30MF_01884102 . ?templateMotifSequenceMatchRegionP0AG30107 faldo:begin ?templateMotifSequenceMatchBeginP0AG30108 . ?templateMotifSequenceMatchBeginP0AG30108 faldo:position ?templateMotifSequenceMatchBeginPositionP0AG30103 ; faldo:reference isoform:P0AG30-1 . ?templateMotifSequenceProfileAlignmentOperationP0AG30109 edam:has_input signature:MF_01884 ; rdf:type edam:operation_0300 . ?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01884113 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AG30MF_01884104 . ?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01884112 . ?targetMotifMatchRegionMatchBeginMF_01884112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01884105 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01884113 edam:has_input signature:MF_01884 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_01884102, 1, (STRLEN(?templateMotifCigarP0AG30MF_01884102) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_01884102, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionP0AG30103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01884105) - 1) AS ?thisPositionOn31) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_01884102, 1, (STRLEN(?templateMotifCigarP0AG30MF_01884102) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_01884102, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0AG30103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01884105) - 1) AS ?thisPositionOn32) . BIND(?this AS ?pfs2t118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) . FILTER (REGEX('G[FY]G[FYR][LV]R', SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_01884102, 1, (STRLEN(?templateMotifCigarP0AG30MF_01884102) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_01884102, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP0AG30103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_01884105) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_01884102, 1, (STRLEN(?templateMotifCigarP0AG30MF_01884102) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_01884102, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP0AG30103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01884105) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs2t123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER (REGEX('DI[YFR]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_01884102, 1, (STRLEN(?templateMotifCigarP0AG30MF_01884102) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_01884102, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP0AG30103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) . BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01884105) - 1) AS ?thisPositionOn41) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_01884102, 1, (STRLEN(?templateMotifCigarP0AG30MF_01884102) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_01884102, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionP0AG30103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) . BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01884105) - 1) AS ?thisPositionOn42) . BIND(?this AS ?pfs2t128) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) . FILTER (REGEX('[ED]R[YFR]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_01884102, 1, (STRLEN(?templateMotifCigarP0AG30MF_01884102) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_01884102, CONCAT('^(?:-*[^-]){', STR(((284 - ?templateMotifSequenceMatchBeginPositionP0AG30103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01884105) - 1) AS ?thisPositionOn46) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_01884102, 1, (STRLEN(?templateMotifCigarP0AG30MF_01884102) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_01884102, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionP0AG30103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01884105) - 1) AS ?thisPositionOn47) . BIND(?this AS ?pfs2t133) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) . FILTER (REGEX('[VL]L[TS]GG', SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AG30MF_01884102, 1, (STRLEN(?templateMotifCigarP0AG30MF_01884102) - STRLEN(REPLACE(?templateMotifCigarP0AG30MF_01884102, CONCAT('^(?:-*[^-]){', STR(((326 - ?templateMotifSequenceMatchBeginPositionP0AG30103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AG30MF_01884104, 1, (STRLEN(?targetMotifMatchCigarP0AG30MF_01884104) - STRLEN(REPLACE(?targetMotifMatchCigarP0AG30MF_01884104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_01884105) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs2t136) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'K')) . BIND(?this AS ?pfs27) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_01884 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01884#construct |