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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_01959#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01959#construct-template-122 |
| http://purl.uniprot.org/unirules/MF_01959#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01959#construct-template-146 |
| http://purl.uniprot.org/unirules/MF_01959#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01959#construct-template-121 |
| http://purl.uniprot.org/unirules/MF_01959#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01959#construct-template-117 |
| http://purl.uniprot.org/unirules/MF_01959#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01959#construct-template-116 |
| http://purl.uniprot.org/unirules/MF_01959#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01959#construct-template-119 |
| http://purl.uniprot.org/unirules/MF_01959#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01959#construct-template-118 |
| http://purl.uniprot.org/unirules/MF_01959#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01959#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01959#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01959#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01959#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01959#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:685917 up:source unirule:MF_01959 .
_:685918 up:source unirule:MF_01959 .
_:685919 up:source unirule:MF_01959 .
_:685920 up:source unirule:MF_01959 .
_:685921 up:source unirule:MF_01959 .
_:685922 up:source unirule:MF_01959 .
_:685923 up:source unirule:MF_01959 .
_:685924 up:source unirule:MF_01959 .
_:685925 up:source unirule:MF_01959 .
_:685926 up:source unirule:MF_01959 .
_:685927 up:source unirule:MF_01959 .
_:685928 up:source unirule:MF_01959 .
_:685929 up:source unirule:MF_01959 .
_:685930 up:source unirule:MF_01959 .
_:685931 up:source unirule:MF_01959 .
_:685932 up:source unirule:MF_01959 .
_:685933 up:source unirule:MF_01959 .
_:685934 up:source unirule:MF_01959 .
_:685935 up:source unirule:MF_01959 .
_:685936 up:source unirule:MF_01959 .
_:685937 up:source unirule:MF_01959 .
_:685938 up:source unirule:MF_01959 .
_:685939 up:source unirule:MF_01959 .
_:685940 up:source unirule:MF_01959 .
_:685941 up:source unirule:MF_01959 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0005886 ,
GO:0017003 ,
keyword:1003 ,
keyword:1133 ,
keyword:201 ,
keyword:349 ,
keyword:408 ,
keyword:472 ,
keyword:479 ,
keyword:735 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Cytochrome c-type biogenesis protein CcmE' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Cytochrome c maturation protein E' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Heme chaperone CcmE' ;
rdf:type up:Structured_Name .
?gene3 skos:altLabel 'cycJ' ;
skos:prefLabel 'ccmE' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CcmE/CycJ family.' .
?case6 up:classifiedWith keyword:997 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Signal-anchor for type II membrane protein' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 up:ligandPart ?ligand24 ;
rdfs:subClassOf chebi:18248 ,
chebi:30413 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:30413 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Extracellular' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Extracellular' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
_:685942 a rdf:Statement ;
up:attribution _:685917 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:685943 a rdf:Statement ;
up:attribution _:685918 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:685944 a rdf:Statement ;
up:attribution _:685919 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:685945 a rdf:Statement ;
up:attribution _:685920 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:685946 a rdf:Statement ;
up:attribution _:685921 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:685947 a rdf:Statement ;
up:attribution _:685922 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:685948 a rdf:Statement ;
up:attribution _:685923 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:201 .
_:685949 a rdf:Statement ;
up:attribution _:685924 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:349 .
_:685950 a rdf:Statement ;
up:attribution _:685925 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:685951 a rdf:Statement ;
up:attribution _:685926 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:685952 a rdf:Statement ;
up:attribution _:685927 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:685953 a rdf:Statement ;
up:attribution _:685928 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:685954 a rdf:Statement ;
up:attribution _:685929 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:685955 a rdf:Statement ;
up:attribution _:685930 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:735 .
_:685956 a rdf:Statement ;
up:attribution _:685931 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:685957 a rdf:Statement ;
up:attribution _:685932 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0017003 .
_:685958 a rdf:Statement ;
up:attribution _:685933 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:685959 a rdf:Statement ;
up:attribution _:685934 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:685960 a rdf:Statement ;
up:source unirule:MF_01959 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:685961 a rdf:Statement ;
up:attribution _:685935 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:685962 a rdf:Statement ;
up:source unirule:MF_01959 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:685963 a rdf:Statement ;
up:attribution _:685936 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:685964 a rdf:Statement ;
up:source unirule:MF_01959 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:685965 a rdf:Statement ;
up:attribution _:685937 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:685966 a rdf:Statement ;
up:source unirule:MF_01959 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:685967 a rdf:Statement ;
up:attribution _:685938 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:685968 a rdf:Statement ;
up:source unirule:MF_01959 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:685969 a rdf:Statement ;
up:attribution _:685939 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:685970 a rdf:Statement ;
up:source unirule:MF_01959 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:685971 a rdf:Statement ;
up:attribution _:685940 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:685972 a rdf:Statement ;
up:source unirule:MF_01959 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:685973 a rdf:Statement ;
up:attribution _:685941 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01959
#Rule MF_01959 Created by:? on:2006-05-12 Modified by:Edouard de Castro on:2023-01-26
VALUES ?supertaxon52 {taxon:188787 taxon:1224}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01959 .
?thisOrganism rdfs:subClassOf+ ?supertaxon52 .
BIND(URI(CONCAT(STR(?this), '#MF_01959a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01959a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01959a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01959a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01959a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionP6949058 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6949060 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69490MF_0195953 .
?templateMotifSequenceMatchRegionP6949058 faldo:begin ?templateMotifSequenceMatchBeginP6949059 .
?templateMotifSequenceMatchBeginP6949059 faldo:position ?templateMotifSequenceMatchBeginPositionP6949054 ;
faldo:reference isoform:P69490-1 .
?templateMotifSequenceProfileAlignmentOperationP6949060 edam:has_input signature:MF_01959 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0195964 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69490MF_0195955 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0195963 .
?targetMotifMatchRegionMatchBeginMF_0195963 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0195956 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0195964 edam:has_input signature:MF_01959 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69490MF_0195953, 1, (STRLEN(?templateMotifCigarP69490MF_0195953) - STRLEN(REPLACE(?templateMotifCigarP69490MF_0195953, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP6949054) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69490MF_0195955, 1, (STRLEN(?targetMotifMatchCigarP69490MF_0195955) - STRLEN(REPLACE(?targetMotifMatchCigarP69490MF_0195955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69490MF_0195955, 1, (STRLEN(?targetMotifMatchCigarP69490MF_0195955) - STRLEN(REPLACE(?targetMotifMatchCigarP69490MF_0195955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0195956) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_01959a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP6949073 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6949075 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69490MF_0195968 .
?templateMotifSequenceMatchRegionP6949073 faldo:begin ?templateMotifSequenceMatchBeginP6949074 .
?templateMotifSequenceMatchBeginP6949074 faldo:position ?templateMotifSequenceMatchBeginPositionP6949069 ;
faldo:reference isoform:P69490-1 .
?templateMotifSequenceProfileAlignmentOperationP6949075 edam:has_input signature:MF_01959 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0195979 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69490MF_0195970 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0195978 .
?targetMotifMatchRegionMatchBeginMF_0195978 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0195971 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0195979 edam:has_input signature:MF_01959 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69490MF_0195968, 1, (STRLEN(?templateMotifCigarP69490MF_0195968) - STRLEN(REPLACE(?templateMotifCigarP69490MF_0195968, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP6949069) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69490MF_0195970, 1, (STRLEN(?targetMotifMatchCigarP69490MF_0195970) - STRLEN(REPLACE(?targetMotifMatchCigarP69490MF_0195970, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69490MF_0195970, 1, (STRLEN(?targetMotifMatchCigarP69490MF_0195970) - STRLEN(REPLACE(?targetMotifMatchCigarP69490MF_0195970, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0195971) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69490MF_0195968, 1, (STRLEN(?templateMotifCigarP69490MF_0195968) - STRLEN(REPLACE(?templateMotifCigarP69490MF_0195968, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP6949069) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69490MF_0195970, 1, (STRLEN(?targetMotifMatchCigarP69490MF_0195970) - STRLEN(REPLACE(?targetMotifMatchCigarP69490MF_0195970, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69490MF_0195970, 1, (STRLEN(?targetMotifMatchCigarP69490MF_0195970) - STRLEN(REPLACE(?targetMotifMatchCigarP69490MF_0195970, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0195971) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_01959a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP6949090 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6949092 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69490MF_0195985 .
?templateMotifSequenceMatchRegionP6949090 faldo:begin ?templateMotifSequenceMatchBeginP6949091 .
?templateMotifSequenceMatchBeginP6949091 faldo:position ?templateMotifSequenceMatchBeginPositionP6949086 ;
faldo:reference isoform:P69490-1 .
?templateMotifSequenceProfileAlignmentOperationP6949092 edam:has_input signature:MF_01959 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0195996 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69490MF_0195987 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0195995 .
?targetMotifMatchRegionMatchBeginMF_0195995 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0195988 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0195996 edam:has_input signature:MF_01959 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69490MF_0195985, 1, (STRLEN(?templateMotifCigarP69490MF_0195985) - STRLEN(REPLACE(?templateMotifCigarP69490MF_0195985, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP6949086) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69490MF_0195987, 1, (STRLEN(?targetMotifMatchCigarP69490MF_0195987) - STRLEN(REPLACE(?targetMotifMatchCigarP69490MF_0195987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69490MF_0195987, 1, (STRLEN(?targetMotifMatchCigarP69490MF_0195987) - STRLEN(REPLACE(?targetMotifMatchCigarP69490MF_0195987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0195988) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01959a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP69490105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69490107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69490MF_01959100 .
?templateMotifSequenceMatchRegionP69490105 faldo:begin ?templateMotifSequenceMatchBeginP69490106 .
?templateMotifSequenceMatchBeginP69490106 faldo:position ?templateMotifSequenceMatchBeginPositionP69490101 ;
faldo:reference isoform:P69490-1 .
?templateMotifSequenceProfileAlignmentOperationP69490107 edam:has_input signature:MF_01959 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01959111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69490MF_01959102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01959110 .
?targetMotifMatchRegionMatchBeginMF_01959110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01959103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01959111 edam:has_input signature:MF_01959 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69490MF_01959100, 1, (STRLEN(?templateMotifCigarP69490MF_01959100) - STRLEN(REPLACE(?templateMotifCigarP69490MF_01959100, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP69490101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69490MF_01959102, 1, (STRLEN(?targetMotifMatchCigarP69490MF_01959102) - STRLEN(REPLACE(?targetMotifMatchCigarP69490MF_01959102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69490MF_01959102, 1, (STRLEN(?targetMotifMatchCigarP69490MF_01959102) - STRLEN(REPLACE(?targetMotifMatchCigarP69490MF_01959102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01959103) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01959a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP69490121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69490123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69490MF_01959116 .
?templateMotifSequenceMatchRegionP69490121 faldo:begin ?templateMotifSequenceMatchBeginP69490122 .
?templateMotifSequenceMatchBeginP69490122 faldo:position ?templateMotifSequenceMatchBeginPositionP69490117 ;
faldo:reference isoform:P69490-1 .
?templateMotifSequenceProfileAlignmentOperationP69490123 edam:has_input signature:MF_01959 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01959127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69490MF_01959118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01959126 .
?targetMotifMatchRegionMatchBeginMF_01959126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01959119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01959127 edam:has_input signature:MF_01959 ;
rdf:type edam:operation_0300 .
FILTER (! (EXISTS {
{
?this up:proteome |
| http://purl.uniprot.org/unirules/MF_01959 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01959#construct |