| http://purl.uniprot.org/unirules/MF_01966#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:689386 up:source unirule:MF_01966 .
_:689387 up:source unirule:MF_01966 .
_:689388 up:source unirule:MF_01966 .
_:689389 up:source unirule:MF_01966 .
_:689390 up:source unirule:MF_01966 .
_:689391 up:source unirule:MF_01966 .
_:689392 up:source unirule:MF_01966 .
_:689393 up:source unirule:MF_01966 .
_:689394 up:source unirule:MF_01966 .
_:689395 up:source unirule:MF_01966 .
_:689396 up:source unirule:MF_01966 .
_:689397 up:source unirule:MF_01966 .
_:689398 up:source unirule:MF_01966 .
_:689399 up:source unirule:MF_01966 .
_:689400 up:source unirule:MF_01966 .
_:689401 up:source unirule:MF_01966 .
_:689402 up:source unirule:MF_01966 .
_:689403 up:source unirule:MF_01966 .
_:689404 up:source unirule:MF_01966 .
_:689405 up:source unirule:MF_01966 .
_:689406 up:source unirule:MF_01966 .
_:689407 up:source unirule:MF_01966 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0052856 ,
keyword:413 ,
keyword:479 ,
keyword:520 ,
keyword:521 ,
keyword:547 ,
keyword:630 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.1.99.6' ;
up:fullName 'NAD(P)H-hydrate epimerase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NAD(P)HX epimerase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'nnrE' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:29103 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 potassium ion per subunit.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NnrE/AIBP family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:64076 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:64076 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:29103 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:29103 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:29103 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:64076 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:64076 .
_:689408 a rdf:Statement ;
up:attribution _:689386 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:689409 a rdf:Statement ;
up:attribution _:689387 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:689410 a rdf:Statement ;
up:attribution _:689388 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:689411 a rdf:Statement ;
up:attribution _:689389 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:689412 a rdf:Statement ;
up:attribution _:689390 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:689413 a rdf:Statement ;
up:attribution _:689391 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:689414 a rdf:Statement ;
up:attribution _:689392 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:689415 a rdf:Statement ;
up:attribution _:689393 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:689416 a rdf:Statement ;
up:attribution _:689394 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:689417 a rdf:Statement ;
up:attribution _:689395 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:689418 a rdf:Statement ;
up:attribution _:689396 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:689419 a rdf:Statement ;
up:attribution _:689397 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:689420 a rdf:Statement ;
up:attribution _:689398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:689421 a rdf:Statement ;
up:attribution _:689399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:630 .
_:689422 a rdf:Statement ;
up:attribution _:689400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052856 .
_:689423 a rdf:Statement ;
up:source unirule:MF_01966 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:689424 a rdf:Statement ;
up:attribution _:689401 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:689425 a rdf:Statement ;
up:source unirule:MF_01966 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:689426 a rdf:Statement ;
up:attribution _:689402 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:689427 a rdf:Statement ;
up:source unirule:MF_01966 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:689428 a rdf:Statement ;
up:attribution _:689403 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:689429 a rdf:Statement ;
up:source unirule:MF_01966 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:689430 a rdf:Statement ;
up:attribution _:689404 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:689431 a rdf:Statement ;
up:source unirule:MF_01966 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:689432 a rdf:Statement ;
up:attribution _:689405 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:689433 a rdf:Statement ;
up:source unirule:MF_01966 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:689434 a rdf:Statement ;
up:attribution _:689406 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:689435 a rdf:Statement ;
up:source unirule:MF_01966 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:689436 a rdf:Statement ;
up:attribution _:689407 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01966
#Rule MF_01966 Created by:? on:2012-02-14 Modified by:Catherine Rivoire on:2024-11-05
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01966 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01966 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_01966a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionQ9X02464 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X02466 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X024MF_0196659 .
?templateMotifSequenceMatchRegionQ9X02464 faldo:begin ?templateMotifSequenceMatchBeginQ9X02465 .
?templateMotifSequenceMatchBeginQ9X02465 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X02460 ;
faldo:reference isoform:Q9X024-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X02466 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0196670 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X024MF_0196661 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0196669 .
?targetMotifMatchRegionMatchBeginMF_0196669 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196662 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0196670 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X024MF_0196659, 1, (STRLEN(?templateMotifCigarQ9X024MF_0196659) - STRLEN(REPLACE(?templateMotifCigarQ9X024MF_0196659, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionQ9X02460) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X024MF_0196661, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_0196661) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_0196661, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X024MF_0196661, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_0196661) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_0196661, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0196662) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X024MF_0196659, 1, (STRLEN(?templateMotifCigarQ9X024MF_0196659) - STRLEN(REPLACE(?templateMotifCigarQ9X024MF_0196659, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionQ9X02460) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X024MF_0196661, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_0196661) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_0196661, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X024MF_0196661, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_0196661) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_0196661, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0196662) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionQ9X02481 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X02483 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X024MF_0196676 .
?templateMotifSequenceMatchRegionQ9X02481 faldo:begin ?templateMotifSequenceMatchBeginQ9X02482 .
?templateMotifSequenceMatchBeginQ9X02482 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X02477 ;
faldo:reference isoform:Q9X024-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X02483 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0196687 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X024MF_0196678 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0196686 .
?targetMotifMatchRegionMatchBeginMF_0196686 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196679 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0196687 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X024MF_0196676, 1, (STRLEN(?templateMotifCigarQ9X024MF_0196676) - STRLEN(REPLACE(?templateMotifCigarQ9X024MF_0196676, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionQ9X02477) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X024MF_0196678, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_0196678) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_0196678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X024MF_0196678, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_0196678) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_0196678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0196679) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X024MF_0196676, 1, (STRLEN(?templateMotifCigarQ9X024MF_0196676) - STRLEN(REPLACE(?templateMotifCigarQ9X024MF_0196676, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ9X02477) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X024MF_0196678, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_0196678) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_0196678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X024MF_0196678, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_0196678) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_0196678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0196679) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]NG[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionQ9X02498 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X024100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X024MF_0196693 .
?templateMotifSequenceMatchRegionQ9X02498 faldo:begin ?templateMotifSequenceMatchBeginQ9X02499 .
?templateMotifSequenceMatchBeginQ9X02499 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X02494 ;
faldo:reference isoform:Q9X024-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X024100 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01966104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X024MF_0196695 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01966103 .
?targetMotifMatchRegionMatchBeginMF_01966103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196696 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01966104 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X024MF_0196693, 1, (STRLEN(?templateMotifCigarQ9X024MF_0196693) - STRLEN(REPLACE(?templateMotifCigarQ9X024MF_0196693, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionQ9X02494) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X024MF_0196695, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_0196695) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_0196695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X024MF_0196695, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_0196695) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_0196695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0196696) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionQ9X024113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X024115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X024MF_01966108 .
?templateMotifSequenceMatchRegionQ9X024113 faldo:begin ?templateMotifSequenceMatchBeginQ9X024114 .
?templateMotifSequenceMatchBeginQ9X024114 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X024109 ;
faldo:reference isoform:Q9X024-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X024115 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01966119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X024MF_01966110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01966118 .
?targetMotifMatchRegionMatchBeginMF_01966118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01966111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01966119 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X024MF_01966108, 1, (STRLEN(?templateMotifCigarQ9X024MF_01966108) - STRLEN(REPLACE(?templateMotifCigarQ9X024MF_01966108, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionQ9X024109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X024MF_01966110, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_01966110) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_01966110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X024MF_01966110, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_01966110) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_01966110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01966111) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionQ9X024128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X024130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X024MF_01966123 .
?templateMotifSequenceMatchRegionQ9X024128 faldo:begin ?templateMotifSequenceMatchBeginQ9X024129 .
?templateMotifSequenceMatchBeginQ9X024129 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X024124 ;
faldo:reference isoform:Q9X024-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X024130 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01966134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X024MF_01966125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01966133 .
?targetMotifMatchRegionMatchBeginMF_01966133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01966126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01966134 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X024MF_01966123, 1, (STRLEN(?templateMotifCigarQ9X024MF_01966123) - STRLEN(REPLACE(?templateMotifCigarQ9X024MF_01966123, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionQ9X024124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X024MF_01966125, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_01966125) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_01966125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X024MF_01966125, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_01966125) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_01966125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_01966126) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionQ9X024143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X024145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X024MF_01966138 .
?templateMotifSequenceMatchRegionQ9X024143 faldo:begin ?templateMotifSequenceMatchBeginQ9X024144 .
?templateMotifSequenceMatchBeginQ9X024144 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X024139 ;
faldo:reference isoform:Q9X024-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X024145 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01966149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X024MF_01966140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01966148 .
?targetMotifMatchRegionMatchBeginMF_01966148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01966141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01966149 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X024MF_01966138, 1, (STRLEN(?templateMotifCigarQ9X024MF_01966138) - STRLEN(REPLACE(?templateMotifCigarQ9X024MF_01966138, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionQ9X024139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X024MF_01966140, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_01966140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_01966140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X024MF_01966140, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_01966140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_01966140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01966141) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionQ9X024158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X024160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X024MF_01966153 .
?templateMotifSequenceMatchRegionQ9X024158 faldo:begin ?templateMotifSequenceMatchBeginQ9X024159 .
?templateMotifSequenceMatchBeginQ9X024159 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X024154 ;
faldo:reference isoform:Q9X024-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X024160 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01966164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X024MF_01966155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01966163 .
?targetMotifMatchRegionMatchBeginMF_01966163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01966156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01966164 edam:has_input signature:MF_01966 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X024MF_01966153, 1, (STRLEN(?templateMotifCigarQ9X024MF_01966153) - STRLEN(REPLACE(?templateMotifCigarQ9X024MF_01966153, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionQ9X024154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X024MF_01966155, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_01966155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_01966155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X024MF_01966155, 1, (STRLEN(?targetMotifMatchCigarQ9X024MF_01966155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X024MF_01966155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01966156) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01966a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
}
"xsd:string |
