| http://purl.uniprot.org/unirules/MF_02009#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:707439 up:source unirule:MF_02009 .
_:707440 up:source unirule:MF_02009 .
_:707441 up:source unirule:MF_02009 .
_:707442 up:source unirule:MF_02009 .
_:707443 up:source unirule:MF_02009 .
_:707444 up:source unirule:MF_02009 .
_:707445 up:source unirule:MF_02009 .
_:707446 up:source unirule:MF_02009 .
_:707447 up:source unirule:MF_02009 .
_:707448 up:source unirule:MF_02009 .
_:707449 up:source unirule:MF_02009 .
_:707450 up:source unirule:MF_02009 .
_:707451 up:source unirule:MF_02009 .
_:707452 up:source unirule:MF_02009 .
_:707453 up:source unirule:MF_02009 .
_:707454 up:source unirule:MF_02009 .
_:707455 up:source unirule:MF_02009 .
_:707456 up:source unirule:MF_02009 .
_:707457 up:source unirule:MF_02009 .
_:707458 up:source unirule:MF_02009 .
_:707459 up:source unirule:MF_02009 .
_:707460 up:source unirule:MF_02009 .
_:707461 up:source unirule:MF_02009 .
_:707462 up:source unirule:MF_02009 .
_:707463 up:source unirule:MF_02009 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0004831 ,
GO:0005524 ,
GO:0005737 ,
GO:0006437 ,
keyword:30 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.1' ;
up:fullName 'Tyrosine--tRNA ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Tyrosyl-tRNA synthetase' ;
up:shortName 'TyrRS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'tyrS' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'KMSKS' region" .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:58315 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:58315 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:58315 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:58315 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:58315 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:30616 .
_:707464 a rdf:Statement ;
up:attribution _:707439 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:707465 a rdf:Statement ;
up:attribution _:707440 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:707466 a rdf:Statement ;
up:attribution _:707441 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:707467 a rdf:Statement ;
up:attribution _:707442 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:707468 a rdf:Statement ;
up:attribution _:707443 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:707469 a rdf:Statement ;
up:attribution _:707444 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:707470 a rdf:Statement ;
up:attribution _:707445 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:707471 a rdf:Statement ;
up:attribution _:707446 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:707472 a rdf:Statement ;
up:attribution _:707447 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:707473 a rdf:Statement ;
up:attribution _:707448 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:707474 a rdf:Statement ;
up:attribution _:707449 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:707475 a rdf:Statement ;
up:attribution _:707450 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:707476 a rdf:Statement ;
up:attribution _:707451 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:707477 a rdf:Statement ;
up:attribution _:707452 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:707478 a rdf:Statement ;
up:attribution _:707453 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004831 .
_:707479 a rdf:Statement ;
up:attribution _:707454 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:707480 a rdf:Statement ;
up:attribution _:707455 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006437 .
_:707481 a rdf:Statement ;
up:attribution _:707456 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:707482 a rdf:Statement ;
up:source unirule:MF_02009 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:707483 a rdf:Statement ;
up:attribution _:707457 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:707484 a rdf:Statement ;
up:source unirule:MF_02009 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:707485 a rdf:Statement ;
up:attribution _:707458 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:707486 a rdf:Statement ;
up:source unirule:MF_02009 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:707487 a rdf:Statement ;
up:attribution _:707459 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:707488 a rdf:Statement ;
up:source unirule:MF_02009 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:707489 a rdf:Statement ;
up:attribution _:707460 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:707490 a rdf:Statement ;
up:source unirule:MF_02009 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:707491 a rdf:Statement ;
up:attribution _:707461 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:707492 a rdf:Statement ;
up:source unirule:MF_02009 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:707493 a rdf:Statement ;
up:attribution _:707462 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:707494 a rdf:Statement ;
up:source unirule:MF_02009 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:707495 a rdf:Statement ;
up:attribution _:707463 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02009
#Rule MF_02009 Created by:? on:2006-05-30 Modified by:Catherine Rivoire on:2024-10-08
VALUES ?supertaxon58 {taxon:28889 taxon:3366610 taxon:192989}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02009 .
?thisOrganism rdfs:subClassOf+ ?supertaxon58 .
BIND(URI(CONCAT(STR(?this), '#MF_02009a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionQ9YA6464 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9YA6466 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9YA64MF_0200959 .
?templateMotifSequenceMatchRegionQ9YA6464 faldo:begin ?templateMotifSequenceMatchBeginQ9YA6465 .
?templateMotifSequenceMatchBeginQ9YA6465 faldo:position ?templateMotifSequenceMatchBeginPositionQ9YA6460 ;
faldo:reference isoform:Q9YA64-1 .
?templateMotifSequenceProfileAlignmentOperationQ9YA6466 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0200970 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9YA64MF_0200961 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0200969 .
?targetMotifMatchRegionMatchBeginMF_0200969 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0200962 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0200970 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9YA64MF_0200959, 1, (STRLEN(?templateMotifCigarQ9YA64MF_0200959) - STRLEN(REPLACE(?templateMotifCigarQ9YA64MF_0200959, CONCAT('^(?:-*[^-]){', STR(((238 - ?templateMotifSequenceMatchBeginPositionQ9YA6460) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9YA64MF_0200961, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_0200961) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_0200961, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9YA64MF_0200961, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_0200961) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_0200961, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0200962) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9YA64MF_0200959, 1, (STRLEN(?templateMotifCigarQ9YA64MF_0200959) - STRLEN(REPLACE(?templateMotifCigarQ9YA64MF_0200959, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionQ9YA6460) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9YA64MF_0200961, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_0200961) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_0200961, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9YA64MF_0200961, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_0200961) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_0200961, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0200962) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'KMSKS')) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionQ9YA6481 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9YA6483 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9YA64MF_0200976 .
?templateMotifSequenceMatchRegionQ9YA6481 faldo:begin ?templateMotifSequenceMatchBeginQ9YA6482 .
?templateMotifSequenceMatchBeginQ9YA6482 faldo:position ?templateMotifSequenceMatchBeginPositionQ9YA6477 ;
faldo:reference isoform:Q9YA64-1 .
?templateMotifSequenceProfileAlignmentOperationQ9YA6483 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0200987 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9YA64MF_0200978 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0200986 .
?targetMotifMatchRegionMatchBeginMF_0200986 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0200979 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0200987 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9YA64MF_0200976, 1, (STRLEN(?templateMotifCigarQ9YA64MF_0200976) - STRLEN(REPLACE(?templateMotifCigarQ9YA64MF_0200976, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionQ9YA6477) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9YA64MF_0200978, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_0200978) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_0200978, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9YA64MF_0200978, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_0200978) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_0200978, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0200979) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionQ9YA6496 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9YA6498 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9YA64MF_0200991 .
?templateMotifSequenceMatchRegionQ9YA6496 faldo:begin ?templateMotifSequenceMatchBeginQ9YA6497 .
?templateMotifSequenceMatchBeginQ9YA6497 faldo:position ?templateMotifSequenceMatchBeginPositionQ9YA6492 ;
faldo:reference isoform:Q9YA64-1 .
?templateMotifSequenceProfileAlignmentOperationQ9YA6498 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02009102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9YA64MF_0200993 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02009101 .
?targetMotifMatchRegionMatchBeginMF_02009101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0200994 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02009102 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9YA64MF_0200991, 1, (STRLEN(?templateMotifCigarQ9YA64MF_0200991) - STRLEN(REPLACE(?templateMotifCigarQ9YA64MF_0200991, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionQ9YA6492) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9YA64MF_0200993, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_0200993) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_0200993, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9YA64MF_0200993, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_0200993) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_0200993, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0200994) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionQ9YA64111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9YA64113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9YA64MF_02009106 .
?templateMotifSequenceMatchRegionQ9YA64111 faldo:begin ?templateMotifSequenceMatchBeginQ9YA64112 .
?templateMotifSequenceMatchBeginQ9YA64112 faldo:position ?templateMotifSequenceMatchBeginPositionQ9YA64107 ;
faldo:reference isoform:Q9YA64-1 .
?templateMotifSequenceProfileAlignmentOperationQ9YA64113 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02009117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9YA64MF_02009108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02009116 .
?targetMotifMatchRegionMatchBeginMF_02009116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02009109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02009117 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9YA64MF_02009106, 1, (STRLEN(?templateMotifCigarQ9YA64MF_02009106) - STRLEN(REPLACE(?templateMotifCigarQ9YA64MF_02009106, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionQ9YA64107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9YA64MF_02009108, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_02009108) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_02009108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9YA64MF_02009108, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_02009108) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_02009108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_02009109) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionQ9YA64126 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9YA64128 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9YA64MF_02009121 .
?templateMotifSequenceMatchRegionQ9YA64126 faldo:begin ?templateMotifSequenceMatchBeginQ9YA64127 .
?templateMotifSequenceMatchBeginQ9YA64127 faldo:position ?templateMotifSequenceMatchBeginPositionQ9YA64122 ;
faldo:reference isoform:Q9YA64-1 .
?templateMotifSequenceProfileAlignmentOperationQ9YA64128 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02009132 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9YA64MF_02009123 .
?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02009131 .
?targetMotifMatchRegionMatchBeginMF_02009131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02009124 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02009132 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9YA64MF_02009121, 1, (STRLEN(?templateMotifCigarQ9YA64MF_02009121) - STRLEN(REPLACE(?templateMotifCigarQ9YA64MF_02009121, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionQ9YA64122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9YA64MF_02009123, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_02009123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_02009123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9YA64MF_02009123, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_02009123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_02009123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_02009124) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionQ9YA64141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9YA64143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9YA64MF_02009136 .
?templateMotifSequenceMatchRegionQ9YA64141 faldo:begin ?templateMotifSequenceMatchBeginQ9YA64142 .
?templateMotifSequenceMatchBeginQ9YA64142 faldo:position ?templateMotifSequenceMatchBeginPositionQ9YA64137 ;
faldo:reference isoform:Q9YA64-1 .
?templateMotifSequenceProfileAlignmentOperationQ9YA64143 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02009147 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9YA64MF_02009138 .
?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02009146 .
?targetMotifMatchRegionMatchBeginMF_02009146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02009139 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02009147 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9YA64MF_02009136, 1, (STRLEN(?templateMotifCigarQ9YA64MF_02009136) - STRLEN(REPLACE(?templateMotifCigarQ9YA64MF_02009136, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionQ9YA64137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9YA64MF_02009138, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_02009138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_02009138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9YA64MF_02009138, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_02009138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_02009138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_02009139) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch155 faldo:location ?templateMotifSequenceMatchRegionQ9YA64156 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9YA64158 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9YA64MF_02009151 .
?templateMotifSequenceMatchRegionQ9YA64156 faldo:begin ?templateMotifSequenceMatchBeginQ9YA64157 .
?templateMotifSequenceMatchBeginQ9YA64157 faldo:position ?templateMotifSequenceMatchBeginPositionQ9YA64152 ;
faldo:reference isoform:Q9YA64-1 .
?templateMotifSequenceProfileAlignmentOperationQ9YA64158 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch159 faldo:location ?targetMotifMatchRegionMatch160 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02009162 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9YA64MF_02009153 .
?targetMotifMatchRegionMatch160 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02009161 .
?targetMotifMatchRegionMatchBeginMF_02009161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02009154 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02009162 edam:has_input signature:MF_02009 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9YA64MF_02009151, 1, (STRLEN(?templateMotifCigarQ9YA64MF_02009151) - STRLEN(REPLACE(?templateMotifCigarQ9YA64MF_02009151, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionQ9YA64152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9YA64MF_02009153, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_02009153) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_02009153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9YA64MF_02009153, 1, (STRLEN(?targetMotifMatchCigarQ9YA64MF_02009153) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA64MF_02009153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_02009154) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02009a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
}
"xsd:string |
