| http://purl.uniprot.org/unirules/MF_02037#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:718040 up:source unirule:MF_02037 .
_:718041 up:source unirule:MF_02037 .
_:718042 up:source unirule:MF_02037 .
_:718043 up:source unirule:MF_02037 .
_:718044 up:source unirule:MF_02037 .
_:718045 up:source unirule:MF_02037 .
_:718046 up:source unirule:MF_02037 .
_:718047 up:source unirule:MF_02037 .
_:718048 up:source unirule:MF_02037 .
_:718049 up:source unirule:MF_02037 .
_:718050 up:source unirule:MF_02037 .
_:718051 up:source unirule:MF_02037 .
_:718052 up:source unirule:MF_02037 .
_:718053 up:source unirule:MF_02037 .
_:718054 up:source unirule:MF_02037 .
_:718055 up:source unirule:MF_02037 .
_:718056 up:source unirule:MF_02037 .
_:718057 up:source unirule:MF_02037 .
_:718058 up:source unirule:MF_02037 .
_:718059 up:source unirule:MF_02037 .
_:718060 up:source unirule:MF_02037 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0052699 ,
GO:0052706 ,
keyword:489 ,
keyword:808 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.44' ;
up:fullName 'Histidine N-alpha-methyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Histidine trimethyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'egtD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; ergothioneine biosynthesis.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the methyltransferase superfamily. EgtD family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:59789 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:57595 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:57595 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:59789 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:59789 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:59789 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:57595 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:57595 .
_:718061 a rdf:Statement ;
up:attribution _:718040 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:718062 a rdf:Statement ;
up:attribution _:718041 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:718063 a rdf:Statement ;
up:attribution _:718042 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:718064 a rdf:Statement ;
up:attribution _:718043 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:718065 a rdf:Statement ;
up:attribution _:718044 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:718066 a rdf:Statement ;
up:attribution _:718045 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:718067 a rdf:Statement ;
up:attribution _:718046 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:718068 a rdf:Statement ;
up:attribution _:718047 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:718069 a rdf:Statement ;
up:attribution _:718048 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:718070 a rdf:Statement ;
up:attribution _:718049 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:718071 a rdf:Statement ;
up:attribution _:718050 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:718072 a rdf:Statement ;
up:attribution _:718051 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052706 .
_:718073 a rdf:Statement ;
up:attribution _:718052 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052699 .
_:718074 a rdf:Statement ;
up:source unirule:MF_02037 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:718075 a rdf:Statement ;
up:attribution _:718053 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:718076 a rdf:Statement ;
up:source unirule:MF_02037 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:718077 a rdf:Statement ;
up:attribution _:718054 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:718078 a rdf:Statement ;
up:source unirule:MF_02037 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:718079 a rdf:Statement ;
up:attribution _:718055 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:718080 a rdf:Statement ;
up:source unirule:MF_02037 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:718081 a rdf:Statement ;
up:attribution _:718056 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:718082 a rdf:Statement ;
up:source unirule:MF_02037 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:718083 a rdf:Statement ;
up:attribution _:718057 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:718084 a rdf:Statement ;
up:source unirule:MF_02037 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:718085 a rdf:Statement ;
up:attribution _:718058 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:718086 a rdf:Statement ;
up:source unirule:MF_02037 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:718087 a rdf:Statement ;
up:attribution _:718059 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:718088 a rdf:Statement ;
up:source unirule:MF_02037 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:718089 a rdf:Statement ;
up:attribution _:718060 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02037
#Rule MF_02037 Created by:? on:2015-07-01 Modified by:Catherine Rivoire on:2024-09-04
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02037 .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(URI(CONCAT(STR(?this), '#MF_02037a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionA0R5M870 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0R5M872 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0R5M8MF_0203765 .
?templateMotifSequenceMatchRegionA0R5M870 faldo:begin ?templateMotifSequenceMatchBeginA0R5M871 .
?templateMotifSequenceMatchBeginA0R5M871 faldo:position ?templateMotifSequenceMatchBeginPositionA0R5M866 ;
faldo:reference isoform:A0R5M8-1 .
?templateMotifSequenceProfileAlignmentOperationA0R5M872 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0203776 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0R5M8MF_0203767 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0203775 .
?targetMotifMatchRegionMatchBeginMF_0203775 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0203768 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0203776 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0R5M8MF_0203765, 1, (STRLEN(?templateMotifCigarA0R5M8MF_0203765) - STRLEN(REPLACE(?templateMotifCigarA0R5M8MF_0203765, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionA0R5M866) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0R5M8MF_0203767, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_0203767) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_0203767, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0R5M8MF_0203767, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_0203767) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_0203767, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0203768) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0R5M8MF_0203765, 1, (STRLEN(?templateMotifCigarA0R5M8MF_0203765) - STRLEN(REPLACE(?templateMotifCigarA0R5M8MF_0203765, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionA0R5M866) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0R5M8MF_0203767, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_0203767) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_0203767, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0R5M8MF_0203767, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_0203767) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_0203767, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0203768) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('D[FMLY]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionA0R5M887 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0R5M889 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0R5M8MF_0203782 .
?templateMotifSequenceMatchRegionA0R5M887 faldo:begin ?templateMotifSequenceMatchBeginA0R5M888 .
?templateMotifSequenceMatchBeginA0R5M888 faldo:position ?templateMotifSequenceMatchBeginPositionA0R5M883 ;
faldo:reference isoform:A0R5M8-1 .
?templateMotifSequenceProfileAlignmentOperationA0R5M889 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0203793 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0R5M8MF_0203784 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0203792 .
?targetMotifMatchRegionMatchBeginMF_0203792 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0203785 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0203793 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0R5M8MF_0203782, 1, (STRLEN(?templateMotifCigarA0R5M8MF_0203782) - STRLEN(REPLACE(?templateMotifCigarA0R5M8MF_0203782, CONCAT('^(?:-*[^-]){', STR(((282 - ?templateMotifSequenceMatchBeginPositionA0R5M883) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0R5M8MF_0203784, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_0203784) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_0203784, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0R5M8MF_0203784, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_0203784) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_0203784, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0203785) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0R5M8MF_0203782, 1, (STRLEN(?templateMotifCigarA0R5M8MF_0203782) - STRLEN(REPLACE(?templateMotifCigarA0R5M8MF_0203782, CONCAT('^(?:-*[^-]){', STR(((284 - ?templateMotifSequenceMatchBeginPositionA0R5M883) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0R5M8MF_0203784, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_0203784) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_0203784, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0R5M8MF_0203784, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_0203784) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_0203784, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0203785) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('E[VI]S', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionA0R5M8104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0R5M8106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0R5M8MF_0203799 .
?templateMotifSequenceMatchRegionA0R5M8104 faldo:begin ?templateMotifSequenceMatchBeginA0R5M8105 .
?templateMotifSequenceMatchBeginA0R5M8105 faldo:position ?templateMotifSequenceMatchBeginPositionA0R5M8100 ;
faldo:reference isoform:A0R5M8-1 .
?templateMotifSequenceProfileAlignmentOperationA0R5M8106 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02037110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0R5M8MF_02037101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02037109 .
?targetMotifMatchRegionMatchBeginMF_02037109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02037102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02037110 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0R5M8MF_0203799, 1, (STRLEN(?templateMotifCigarA0R5M8MF_0203799) - STRLEN(REPLACE(?templateMotifCigarA0R5M8MF_0203799, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionA0R5M8100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037101, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037101) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037101, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037101) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_02037102) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionA0R5M8119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0R5M8121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0R5M8MF_02037114 .
?templateMotifSequenceMatchRegionA0R5M8119 faldo:begin ?templateMotifSequenceMatchBeginA0R5M8120 .
?templateMotifSequenceMatchBeginA0R5M8120 faldo:position ?templateMotifSequenceMatchBeginPositionA0R5M8115 ;
faldo:reference isoform:A0R5M8-1 .
?templateMotifSequenceProfileAlignmentOperationA0R5M8121 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02037125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0R5M8MF_02037116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02037124 .
?targetMotifMatchRegionMatchBeginMF_02037124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02037117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02037125 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0R5M8MF_02037114, 1, (STRLEN(?templateMotifCigarA0R5M8MF_02037114) - STRLEN(REPLACE(?templateMotifCigarA0R5M8MF_02037114, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionA0R5M8115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037116, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037116) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037116, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037116) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_02037117) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionA0R5M8134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0R5M8136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0R5M8MF_02037129 .
?templateMotifSequenceMatchRegionA0R5M8134 faldo:begin ?templateMotifSequenceMatchBeginA0R5M8135 .
?templateMotifSequenceMatchBeginA0R5M8135 faldo:position ?templateMotifSequenceMatchBeginPositionA0R5M8130 ;
faldo:reference isoform:A0R5M8-1 .
?templateMotifSequenceProfileAlignmentOperationA0R5M8136 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02037140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0R5M8MF_02037131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02037139 .
?targetMotifMatchRegionMatchBeginMF_02037139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02037132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02037140 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0R5M8MF_02037129, 1, (STRLEN(?templateMotifCigarA0R5M8MF_02037129) - STRLEN(REPLACE(?templateMotifCigarA0R5M8MF_02037129, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionA0R5M8130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037131, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037131) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037131, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037131) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_02037132) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionA0R5M8149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0R5M8151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0R5M8MF_02037144 .
?templateMotifSequenceMatchRegionA0R5M8149 faldo:begin ?templateMotifSequenceMatchBeginA0R5M8150 .
?templateMotifSequenceMatchBeginA0R5M8150 faldo:position ?templateMotifSequenceMatchBeginPositionA0R5M8145 ;
faldo:reference isoform:A0R5M8-1 .
?templateMotifSequenceProfileAlignmentOperationA0R5M8151 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02037155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0R5M8MF_02037146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02037154 .
?targetMotifMatchRegionMatchBeginMF_02037154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02037147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02037155 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0R5M8MF_02037144, 1, (STRLEN(?templateMotifCigarA0R5M8MF_02037144) - STRLEN(REPLACE(?templateMotifCigarA0R5M8MF_02037144, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionA0R5M8145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037146, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037146) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037146, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037146) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_02037147) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionA0R5M8164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0R5M8166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0R5M8MF_02037159 .
?templateMotifSequenceMatchRegionA0R5M8164 faldo:begin ?templateMotifSequenceMatchBeginA0R5M8165 .
?templateMotifSequenceMatchBeginA0R5M8165 faldo:position ?templateMotifSequenceMatchBeginPositionA0R5M8160 ;
faldo:reference isoform:A0R5M8-1 .
?templateMotifSequenceProfileAlignmentOperationA0R5M8166 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02037170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0R5M8MF_02037161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02037169 .
?targetMotifMatchRegionMatchBeginMF_02037169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02037162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02037170 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0R5M8MF_02037159, 1, (STRLEN(?templateMotifCigarA0R5M8MF_02037159) - STRLEN(REPLACE(?templateMotifCigarA0R5M8MF_02037159, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionA0R5M8160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037161, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037161) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037161, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037161) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_02037162) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionA0R5M8179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0R5M8181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0R5M8MF_02037174 .
?templateMotifSequenceMatchRegionA0R5M8179 faldo:begin ?templateMotifSequenceMatchBeginA0R5M8180 .
?templateMotifSequenceMatchBeginA0R5M8180 faldo:position ?templateMotifSequenceMatchBeginPositionA0R5M8175 ;
faldo:reference isoform:A0R5M8-1 .
?templateMotifSequenceProfileAlignmentOperationA0R5M8181 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02037185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0R5M8MF_02037176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02037184 .
?targetMotifMatchRegionMatchBeginMF_02037184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02037177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02037185 edam:has_input signature:MF_02037 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0R5M8MF_02037174, 1, (STRLEN(?templateMotifCigarA0R5M8MF_02037174) - STRLEN(REPLACE(?templateMotifCigarA0R5M8MF_02037174, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionA0R5M8175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037176, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037176) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0R5M8MF_02037176, 1, (STRLEN(?targetMotifMatchCigarA0R5M8MF_02037176) - STRLEN(REPLACE(?targetMotifMatchCigarA0R5M8MF_02037176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_02037177) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02037a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
}
"xsd:string |
