| http://purl.uniprot.org/unirules/MF_02042#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:720479 up:source unirule:MF_02042 .
_:720480 up:source unirule:MF_02042 .
_:720481 up:source unirule:MF_02042 .
_:720482 up:source unirule:MF_02042 .
_:720483 up:source unirule:MF_02042 .
_:720484 up:source unirule:MF_02042 .
_:720485 up:source unirule:MF_02042 .
_:720486 up:source unirule:MF_02042 .
_:720487 up:source unirule:MF_02042 .
_:720488 up:source unirule:MF_02042 .
_:720489 up:source unirule:MF_02042 .
_:720490 up:source unirule:MF_02042 .
_:720491 up:source unirule:MF_02042 .
_:720492 up:source unirule:MF_02042 .
_:720493 up:source unirule:MF_02042 .
_:720494 up:source unirule:MF_02042 .
_:720495 up:source unirule:MF_02042 .
_:720496 up:source unirule:MF_02042 .
_:720497 up:source unirule:MF_02042 .
_:720498 up:source unirule:MF_02042 .
_:720499 up:source unirule:MF_02042 .
_:720500 up:source unirule:MF_02042 .
_:720501 up:source unirule:MF_02042 .
_:720502 up:source unirule:MF_02042 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000049 ,
GO:0002943 ,
GO:0010181 ,
GO:0017150 ,
keyword:285 ,
keyword:288 ,
keyword:521 ,
keyword:560 ,
keyword:694 ,
keyword:819 ,
keyword:820 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.3.1.-' ;
up:fullName 'tRNA-dihydrouridine synthase B' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dusB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 up:cofactor chebi:58210 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Dus family. DusB subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:58210 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:58210 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:58210 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:58210 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:58210 .
_:720503 a rdf:Statement ;
up:attribution _:720479 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:720504 a rdf:Statement ;
up:attribution _:720480 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:720505 a rdf:Statement ;
up:attribution _:720481 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:720506 a rdf:Statement ;
up:attribution _:720482 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:720507 a rdf:Statement ;
up:attribution _:720483 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:720508 a rdf:Statement ;
up:attribution _:720484 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:720509 a rdf:Statement ;
up:attribution _:720485 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:720510 a rdf:Statement ;
up:attribution _:720486 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:720511 a rdf:Statement ;
up:attribution _:720487 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:720512 a rdf:Statement ;
up:attribution _:720488 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:720513 a rdf:Statement ;
up:attribution _:720489 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:720514 a rdf:Statement ;
up:attribution _:720490 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:720515 a rdf:Statement ;
up:attribution _:720491 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:720516 a rdf:Statement ;
up:attribution _:720492 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:720517 a rdf:Statement ;
up:attribution _:720493 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010181 .
_:720518 a rdf:Statement ;
up:attribution _:720494 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:720519 a rdf:Statement ;
up:attribution _:720495 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0017150 .
_:720520 a rdf:Statement ;
up:attribution _:720496 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002943 .
_:720521 a rdf:Statement ;
up:source unirule:MF_02042 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:720522 a rdf:Statement ;
up:attribution _:720497 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:720523 a rdf:Statement ;
up:source unirule:MF_02042 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:720524 a rdf:Statement ;
up:attribution _:720498 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:720525 a rdf:Statement ;
up:source unirule:MF_02042 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:720526 a rdf:Statement ;
up:attribution _:720499 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:720527 a rdf:Statement ;
up:source unirule:MF_02042 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:720528 a rdf:Statement ;
up:attribution _:720500 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:720529 a rdf:Statement ;
up:source unirule:MF_02042 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:720530 a rdf:Statement ;
up:attribution _:720501 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:720531 a rdf:Statement ;
up:source unirule:MF_02042 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:720532 a rdf:Statement ;
up:attribution _:720502 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02042
#Rule MF_02042 Created by:? on:2015-07-20 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02042 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_02042a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionP0ABT555 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT557 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT5MF_0204250 .
?templateMotifSequenceMatchRegionP0ABT555 faldo:begin ?templateMotifSequenceMatchBeginP0ABT556 .
?templateMotifSequenceMatchBeginP0ABT556 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT551 ;
faldo:reference isoform:P0ABT5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT557 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0204261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT5MF_0204252 .
?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0204260 .
?targetMotifMatchRegionMatchBeginMF_0204260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0204253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0204261 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT5MF_0204250, 1, (STRLEN(?templateMotifCigarP0ABT5MF_0204250) - STRLEN(REPLACE(?templateMotifCigarP0ABT5MF_0204250, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP0ABT551) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204252, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204252) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204252, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204252) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0204253) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT5MF_0204250, 1, (STRLEN(?templateMotifCigarP0ABT5MF_0204250) - STRLEN(REPLACE(?templateMotifCigarP0ABT5MF_0204250, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP0ABT551) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204252, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204252) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204252, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204252) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0204253) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'PMA')) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP0ABT572 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT574 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT5MF_0204267 .
?templateMotifSequenceMatchRegionP0ABT572 faldo:begin ?templateMotifSequenceMatchBeginP0ABT573 .
?templateMotifSequenceMatchBeginP0ABT573 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT568 ;
faldo:reference isoform:P0ABT5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT574 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0204278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT5MF_0204269 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0204277 .
?targetMotifMatchRegionMatchBeginMF_0204277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0204270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0204278 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT5MF_0204267, 1, (STRLEN(?templateMotifCigarP0ABT5MF_0204267) - STRLEN(REPLACE(?templateMotifCigarP0ABT5MF_0204267, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP0ABT568) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204269, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204269) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204269, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204269) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0204270) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT5MF_0204267, 1, (STRLEN(?templateMotifCigarP0ABT5MF_0204267) - STRLEN(REPLACE(?templateMotifCigarP0ABT5MF_0204267, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP0ABT568) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204269, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204269) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204269, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204269) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0204270) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)) = 'NGD')) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP0ABT589 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT591 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT5MF_0204284 .
?templateMotifSequenceMatchRegionP0ABT589 faldo:begin ?templateMotifSequenceMatchBeginP0ABT590 .
?templateMotifSequenceMatchBeginP0ABT590 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT585 ;
faldo:reference isoform:P0ABT5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT591 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0204295 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT5MF_0204286 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0204294 .
?targetMotifMatchRegionMatchBeginMF_0204294 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0204287 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0204295 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT5MF_0204284, 1, (STRLEN(?templateMotifCigarP0ABT5MF_0204284) - STRLEN(REPLACE(?templateMotifCigarP0ABT5MF_0204284, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP0ABT585) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204286, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204286) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204286, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204286) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0204287) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT5MF_0204284, 1, (STRLEN(?templateMotifCigarP0ABT5MF_0204284) - STRLEN(REPLACE(?templateMotifCigarP0ABT5MF_0204284, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP0ABT585) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204286, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204286) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT5MF_0204286, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_0204286) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_0204286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0204287) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)) = 'GR')) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP0ABT5106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT5108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT5MF_02042101 .
?templateMotifSequenceMatchRegionP0ABT5106 faldo:begin ?templateMotifSequenceMatchBeginP0ABT5107 .
?templateMotifSequenceMatchBeginP0ABT5107 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT5102 ;
faldo:reference isoform:P0ABT5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT5108 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02042112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT5MF_02042103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02042111 .
?targetMotifMatchRegionMatchBeginMF_02042111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02042104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02042112 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT5MF_02042101, 1, (STRLEN(?templateMotifCigarP0ABT5MF_02042101) - STRLEN(REPLACE(?templateMotifCigarP0ABT5MF_02042101, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP0ABT5102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT5MF_02042103, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_02042103) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_02042103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT5MF_02042103, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_02042103) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_02042103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_02042104) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP0ABT5121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT5123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT5MF_02042116 .
?templateMotifSequenceMatchRegionP0ABT5121 faldo:begin ?templateMotifSequenceMatchBeginP0ABT5122 .
?templateMotifSequenceMatchBeginP0ABT5122 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT5117 ;
faldo:reference isoform:P0ABT5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT5123 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02042127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT5MF_02042118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02042126 .
?targetMotifMatchRegionMatchBeginMF_02042126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02042119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02042127 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT5MF_02042116, 1, (STRLEN(?templateMotifCigarP0ABT5MF_02042116) - STRLEN(REPLACE(?templateMotifCigarP0ABT5MF_02042116, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP0ABT5117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT5MF_02042118, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_02042118) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_02042118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT5MF_02042118, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_02042118) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_02042118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_02042119) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP0ABT5136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABT5138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABT5MF_02042131 .
?templateMotifSequenceMatchRegionP0ABT5136 faldo:begin ?templateMotifSequenceMatchBeginP0ABT5137 .
?templateMotifSequenceMatchBeginP0ABT5137 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABT5132 ;
faldo:reference isoform:P0ABT5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABT5138 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02042142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABT5MF_02042133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02042141 .
?targetMotifMatchRegionMatchBeginMF_02042141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02042134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02042142 edam:has_input signature:MF_02042 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABT5MF_02042131, 1, (STRLEN(?templateMotifCigarP0ABT5MF_02042131) - STRLEN(REPLACE(?templateMotifCigarP0ABT5MF_02042131, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP0ABT5132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABT5MF_02042133, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_02042133) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_02042133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABT5MF_02042133, 1, (STRLEN(?targetMotifMatchCigarP0ABT5MF_02042133) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABT5MF_02042133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_02042134) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02042a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
}
"xsd:string |
