| http://purl.uniprot.org/unirules/MF_02116#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:750984 up:source unirule:MF_02116 .
_:750985 up:source unirule:MF_02116 .
_:750986 up:source unirule:MF_02116 .
_:750987 up:source unirule:MF_02116 .
_:750988 up:source unirule:MF_02116 .
_:750989 up:source unirule:MF_02116 .
_:750990 up:source unirule:MF_02116 .
_:750991 up:source unirule:MF_02116 .
_:750992 up:source unirule:MF_02116 .
_:750993 up:source unirule:MF_02116 .
_:750994 up:source unirule:MF_02116 .
_:750995 up:source unirule:MF_02116 .
_:750996 up:source unirule:MF_02116 .
_:750997 up:source unirule:MF_02116 .
_:750998 up:source unirule:MF_02116 .
_:750999 up:source unirule:MF_02116 .
_:751000 up:source unirule:MF_02116 .
_:751001 up:source unirule:MF_02116 .
_:751002 up:source unirule:MF_02116 .
_:751003 up:source unirule:MF_02116 .
_:751004 up:source unirule:MF_02116 .
_:751005 up:source unirule:MF_02116 .
_:751006 up:source unirule:MF_02116 .
_:751007 up:source unirule:MF_02116 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0008198 ,
GO:0009231 ,
GO:0016811 ,
GO:0052645 ,
keyword:378 ,
keyword:408 ,
keyword:479 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.102' ;
up:fullName "2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase" ;
up:shortName 'FAPy deformylase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Formamide hydrolase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'arfB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy)." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:29033 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Requires one Fe(2+) ion for activity.' .
?annotation7 up:cofactor chebi:29033 ,
chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Requires an additional second metal ion that could be Fe(2+) or Zn(2+).' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; coenzyme F420 biosynthesis.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; riboflavin biosynthesis.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the creatininase superfamily. FAPy deformylase family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:24875 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:24875 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:24875 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:24875 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:24875 .
_:751008 a rdf:Statement ;
up:attribution _:750984 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:751009 a rdf:Statement ;
up:attribution _:750985 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:751010 a rdf:Statement ;
up:attribution _:750986 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:751011 a rdf:Statement ;
up:attribution _:750987 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:751012 a rdf:Statement ;
up:attribution _:750988 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:751013 a rdf:Statement ;
up:attribution _:750989 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:751014 a rdf:Statement ;
up:attribution _:750990 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:751015 a rdf:Statement ;
up:attribution _:750991 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:751016 a rdf:Statement ;
up:attribution _:750992 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:751017 a rdf:Statement ;
up:attribution _:750993 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:751018 a rdf:Statement ;
up:attribution _:750994 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:751019 a rdf:Statement ;
up:attribution _:750995 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:751020 a rdf:Statement ;
up:attribution _:750996 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:751021 a rdf:Statement ;
up:attribution _:750997 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:751022 a rdf:Statement ;
up:attribution _:750998 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:751023 a rdf:Statement ;
up:attribution _:750999 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008198 .
_:751024 a rdf:Statement ;
up:attribution _:751000 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016811 .
_:751025 a rdf:Statement ;
up:attribution _:751001 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009231 .
_:751026 a rdf:Statement ;
up:attribution _:751002 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052645 .
_:751027 a rdf:Statement ;
up:source unirule:MF_02116 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:751028 a rdf:Statement ;
up:attribution _:751003 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:751029 a rdf:Statement ;
up:source unirule:MF_02116 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:751030 a rdf:Statement ;
up:attribution _:751004 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:751031 a rdf:Statement ;
up:source unirule:MF_02116 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:751032 a rdf:Statement ;
up:attribution _:751005 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:751033 a rdf:Statement ;
up:source unirule:MF_02116 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:751034 a rdf:Statement ;
up:attribution _:751006 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:751035 a rdf:Statement ;
up:source unirule:MF_02116 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:751036 a rdf:Statement ;
up:attribution _:751007 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02116
#Rule MF_02116 Created by:? on:2011-02-22 Modified by:Edouard de Castro on:2022-11-19
VALUES ?supertaxon47 {taxon:183925 taxon:183939}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02116 .
?thisOrganism rdfs:subClassOf+ ?supertaxon47 .
BIND(URI(CONCAT(STR(?this), '#MF_02116a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionQ5758053 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5758055 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57580MF_0211648 .
?templateMotifSequenceMatchRegionQ5758053 faldo:begin ?templateMotifSequenceMatchBeginQ5758054 .
?templateMotifSequenceMatchBeginQ5758054 faldo:position ?templateMotifSequenceMatchBeginPositionQ5758049 ;
faldo:reference isoform:Q57580-1 .
?templateMotifSequenceProfileAlignmentOperationQ5758055 edam:has_input signature:MF_02116 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211659 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57580MF_0211650 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211658 .
?targetMotifMatchRegionMatchBeginMF_0211658 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211651 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0211659 edam:has_input signature:MF_02116 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57580MF_0211648, 1, (STRLEN(?templateMotifCigarQ57580MF_0211648) - STRLEN(REPLACE(?templateMotifCigarQ57580MF_0211648, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionQ5758049) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57580MF_0211650, 1, (STRLEN(?targetMotifMatchCigarQ57580MF_0211650) - STRLEN(REPLACE(?targetMotifMatchCigarQ57580MF_0211650, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57580MF_0211650, 1, (STRLEN(?targetMotifMatchCigarQ57580MF_0211650) - STRLEN(REPLACE(?targetMotifMatchCigarQ57580MF_0211650, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0211651) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionQ5758068 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5758070 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57580MF_0211663 .
?templateMotifSequenceMatchRegionQ5758068 faldo:begin ?templateMotifSequenceMatchBeginQ5758069 .
?templateMotifSequenceMatchBeginQ5758069 faldo:position ?templateMotifSequenceMatchBeginPositionQ5758064 ;
faldo:reference isoform:Q57580-1 .
?templateMotifSequenceProfileAlignmentOperationQ5758070 edam:has_input signature:MF_02116 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211674 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57580MF_0211665 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211673 .
?targetMotifMatchRegionMatchBeginMF_0211673 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211666 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0211674 edam:has_input signature:MF_02116 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57580MF_0211663, 1, (STRLEN(?templateMotifCigarQ57580MF_0211663) - STRLEN(REPLACE(?templateMotifCigarQ57580MF_0211663, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionQ5758064) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57580MF_0211665, 1, (STRLEN(?targetMotifMatchCigarQ57580MF_0211665) - STRLEN(REPLACE(?targetMotifMatchCigarQ57580MF_0211665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57580MF_0211665, 1, (STRLEN(?targetMotifMatchCigarQ57580MF_0211665) - STRLEN(REPLACE(?targetMotifMatchCigarQ57580MF_0211665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0211666) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionQ5758083 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5758085 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57580MF_0211678 .
?templateMotifSequenceMatchRegionQ5758083 faldo:begin ?templateMotifSequenceMatchBeginQ5758084 .
?templateMotifSequenceMatchBeginQ5758084 faldo:position ?templateMotifSequenceMatchBeginPositionQ5758079 ;
faldo:reference isoform:Q57580-1 .
?templateMotifSequenceProfileAlignmentOperationQ5758085 edam:has_input signature:MF_02116 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211689 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57580MF_0211680 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211688 .
?targetMotifMatchRegionMatchBeginMF_0211688 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211681 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0211689 edam:has_input signature:MF_02116 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57580MF_0211678, 1, (STRLEN(?templateMotifCigarQ57580MF_0211678) - STRLEN(REPLACE(?templateMotifCigarQ57580MF_0211678, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionQ5758079) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57580MF_0211680, 1, (STRLEN(?targetMotifMatchCigarQ57580MF_0211680) - STRLEN(REPLACE(?targetMotifMatchCigarQ57580MF_0211680, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57580MF_0211680, 1, (STRLEN(?targetMotifMatchCigarQ57580MF_0211680) - STRLEN(REPLACE(?targetMotifMatchCigarQ57580MF_0211680, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0211681) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionQ5758098 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57580100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57580MF_0211693 .
?templateMotifSequenceMatchRegionQ5758098 faldo:begin ?templateMotifSequenceMatchBeginQ5758099 .
?templateMotifSequenceMatchBeginQ5758099 faldo:position ?templateMotifSequenceMatchBeginPositionQ5758094 ;
faldo:reference isoform:Q57580-1 .
?templateMotifSequenceProfileAlignmentOperationQ57580100 edam:has_input signature:MF_02116 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02116104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57580MF_0211695 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02116103 .
?targetMotifMatchRegionMatchBeginMF_02116103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211696 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02116104 edam:has_input signature:MF_02116 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57580MF_0211693, 1, (STRLEN(?templateMotifCigarQ57580MF_0211693) - STRLEN(REPLACE(?templateMotifCigarQ57580MF_0211693, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionQ5758094) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57580MF_0211695, 1, (STRLEN(?targetMotifMatchCigarQ57580MF_0211695) - STRLEN(REPLACE(?targetMotifMatchCigarQ57580MF_0211695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57580MF_0211695, 1, (STRLEN(?targetMotifMatchCigarQ57580MF_0211695) - STRLEN(REPLACE(?targetMotifMatchCigarQ57580MF_0211695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0211696) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionQ57580113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57580115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57580MF_02116108 .
?templateMotifSequenceMatchRegionQ57580113 faldo:begin ?templateMotifSequenceMatchBeginQ57580114 .
?templateMotifSequenceMatchBeginQ57580114 faldo:position ?templateMotifSequenceMatchBeginPositionQ57580109 ;
faldo:reference isoform:Q57580-1 .
?templateMotifSequenceProfileAlignmentOperationQ57580115 edam:has_input signature:MF_02116 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02116119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57580MF_02116110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02116118 .
?targetMotifMatchRegionMatchBeginMF_02116118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02116111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02116119 edam:has_input signature:MF_02116 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57580MF_02116108, 1, (STRLEN(?templateMotifCigarQ57580MF_02116108) - STRLEN(REPLACE(?templateMotifCigarQ57580MF_02116108, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ57580109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57580MF_02116110, 1, (STRLEN(?targetMotifMatchCigarQ57580MF_02116110) - STRLEN(REPLACE(?targetMotifMatchCigarQ57580MF_02116110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57580MF_02116110, 1, (STRLEN(?targetMotifMatchCigarQ57580MF_02116110) - STRLEN(REPLACE(?targetMotifMatchCigarQ57580MF_02116110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_02116111) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02116a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
}
"xsd:string |
