| http://purl.uniprot.org/unirules/MF_02124#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:754776 up:source unirule:MF_02124 .
_:754777 up:source unirule:MF_02124 .
_:754778 up:source unirule:MF_02124 .
_:754779 up:source unirule:MF_02124 .
_:754780 up:source unirule:MF_02124 .
_:754781 up:source unirule:MF_02124 .
_:754782 up:source unirule:MF_02124 .
_:754783 up:source unirule:MF_02124 .
_:754784 up:source unirule:MF_02124 .
_:754785 up:source unirule:MF_02124 .
_:754786 up:source unirule:MF_02124 .
_:754787 up:source unirule:MF_02124 .
_:754788 up:source unirule:MF_02124 .
_:754789 up:source unirule:MF_02124 .
_:754790 up:source unirule:MF_02124 .
_:754791 up:source unirule:MF_02124 .
_:754792 up:source unirule:MF_02124 .
_:754793 up:source unirule:MF_02124 .
_:754794 up:source unirule:MF_02124 .
_:754795 up:source unirule:MF_02124 .
_:754796 up:source unirule:MF_02124 .
_:754797 up:source unirule:MF_02124 .
_:754798 up:source unirule:MF_02124 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0016758 ,
GO:0030979 ,
keyword:119 ,
keyword:328 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.99.16' ;
up:fullName 'Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase' ;
up:shortName 'GMPMT' ;
rdf:type up:Structured_Name .
?name1 up:fullName '(1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'glgE' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glycosyl hydrolase 13 family. GlgE subfamily.' .
?case8 up:classifiedWith GO:0005978 ,
keyword:320 ,
keyword:321 .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:63576 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:63576 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:63576 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:63576 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:63576 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
_:754799 a rdf:Statement ;
up:attribution _:754776 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:754800 a rdf:Statement ;
up:attribution _:754777 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:754801 a rdf:Statement ;
up:attribution _:754778 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:754802 a rdf:Statement ;
up:attribution _:754779 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:754803 a rdf:Statement ;
up:attribution _:754780 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:754804 a rdf:Statement ;
up:attribution _:754781 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:754805 a rdf:Statement ;
up:attribution _:754782 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:754806 a rdf:Statement ;
up:attribution _:754783 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:754807 a rdf:Statement ;
up:attribution _:754784 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:754808 a rdf:Statement ;
up:attribution _:754785 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:754809 a rdf:Statement ;
up:attribution _:754786 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016758 .
_:754810 a rdf:Statement ;
up:attribution _:754787 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030979 .
_:754811 a rdf:Statement ;
up:attribution _:754788 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:320 .
_:754812 a rdf:Statement ;
up:attribution _:754789 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:321 .
_:754813 a rdf:Statement ;
up:attribution _:754790 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005978 .
_:754814 a rdf:Statement ;
up:source unirule:MF_02124 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:754815 a rdf:Statement ;
up:attribution _:754791 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:754816 a rdf:Statement ;
up:source unirule:MF_02124 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:754817 a rdf:Statement ;
up:attribution _:754792 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:754818 a rdf:Statement ;
up:source unirule:MF_02124 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:754819 a rdf:Statement ;
up:attribution _:754793 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:754820 a rdf:Statement ;
up:source unirule:MF_02124 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:754821 a rdf:Statement ;
up:attribution _:754794 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:754822 a rdf:Statement ;
up:source unirule:MF_02124 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:754823 a rdf:Statement ;
up:attribution _:754795 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:754824 a rdf:Statement ;
up:source unirule:MF_02124 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:754825 a rdf:Statement ;
up:attribution _:754796 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:754826 a rdf:Statement ;
up:source unirule:MF_02124 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:754827 a rdf:Statement ;
up:attribution _:754797 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:754828 a rdf:Statement ;
up:source unirule:MF_02124 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:754829 a rdf:Statement ;
up:attribution _:754798 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02124
#Rule MF_02124 Created by:? on:2011-09-29 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon62 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02124 .
?thisOrganism rdfs:subClassOf+ ?supertaxon62 .
BIND(URI(CONCAT(STR(?this), '#MF_02124a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionQ9L1K268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1K2MF_0212463 .
?templateMotifSequenceMatchRegionQ9L1K268 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K269 .
?templateMotifSequenceMatchBeginQ9L1K269 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K264 ;
faldo:reference isoform:Q9L1K2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1K270 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0212474 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1K2MF_0212465 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0212473 .
?targetMotifMatchRegionMatchBeginMF_0212473 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212466 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0212474 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_0212463, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_0212463) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_0212463, CONCAT('^(?:-*[^-]){', STR(((534 - ?templateMotifSequenceMatchBeginPositionQ9L1K264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212465, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212465) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212465, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212465) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0212466) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_0212463, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_0212463) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_0212463, CONCAT('^(?:-*[^-]){', STR(((535 - ?templateMotifSequenceMatchBeginPositionQ9L1K264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212465, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212465) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212465, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212465) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0212466) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('K[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionQ9L1K285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1K2MF_0212480 .
?templateMotifSequenceMatchRegionQ9L1K285 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K286 .
?templateMotifSequenceMatchBeginQ9L1K286 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K281 ;
faldo:reference isoform:Q9L1K2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1K287 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0212491 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1K2MF_0212482 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0212490 .
?targetMotifMatchRegionMatchBeginMF_0212490 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212483 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0212491 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_0212480, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_0212480) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_0212480, CONCAT('^(?:-*[^-]){', STR(((394 - ?templateMotifSequenceMatchBeginPositionQ9L1K281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212482, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212482) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212482, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212482) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0212483) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1K2MF_0212495 .
?templateMotifSequenceMatchRegionQ9L1K2100 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2101 .
?templateMotifSequenceMatchBeginQ9L1K2101 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K296 ;
faldo:reference isoform:Q9L1K2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1K2102 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1K2MF_0212497 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124105 .
?targetMotifMatchRegionMatchBeginMF_02124105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212498 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02124106 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_0212495, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_0212495) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_0212495, CONCAT('^(?:-*[^-]){', STR(((423 - ?templateMotifSequenceMatchBeginPositionQ9L1K296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212497, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212497) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_0212497, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_0212497) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_0212497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0212498) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1K2MF_02124110 .
?templateMotifSequenceMatchRegionQ9L1K2115 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2116 .
?templateMotifSequenceMatchBeginQ9L1K2116 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K2111 ;
faldo:reference isoform:Q9L1K2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1K2117 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1K2MF_02124112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124120 .
?targetMotifMatchRegionMatchBeginMF_02124120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02124113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02124121 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_02124110, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_02124110) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_02124110, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionQ9L1K2111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124112, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124112) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124112, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124112) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_02124113) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1K2MF_02124125 .
?templateMotifSequenceMatchRegionQ9L1K2130 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2131 .
?templateMotifSequenceMatchBeginQ9L1K2131 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K2126 ;
faldo:reference isoform:Q9L1K2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1K2132 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1K2MF_02124127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124135 .
?targetMotifMatchRegionMatchBeginMF_02124135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02124128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02124136 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_02124125, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_02124125) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_02124125, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionQ9L1K2126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124127, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124127) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124127, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124127) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_02124128) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1K2MF_02124140 .
?templateMotifSequenceMatchRegionQ9L1K2145 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2146 .
?templateMotifSequenceMatchBeginQ9L1K2146 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K2141 ;
faldo:reference isoform:Q9L1K2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1K2147 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1K2MF_02124142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124150 .
?targetMotifMatchRegionMatchBeginMF_02124150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02124143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02124151 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_02124140, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_02124140) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_02124140, CONCAT('^(?:-*[^-]){', STR(((359 - ?templateMotifSequenceMatchBeginPositionQ9L1K2141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124142, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124142) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124142, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124142) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_02124143) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1K2MF_02124155 .
?templateMotifSequenceMatchRegionQ9L1K2160 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2161 .
?templateMotifSequenceMatchBeginQ9L1K2161 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K2156 ;
faldo:reference isoform:Q9L1K2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1K2162 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1K2MF_02124157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124165 .
?targetMotifMatchRegionMatchBeginMF_02124165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02124158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02124166 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_02124155, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_02124155) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_02124155, CONCAT('^(?:-*[^-]){', STR(((395 - ?templateMotifSequenceMatchBeginPositionQ9L1K2156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124157, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124157) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124157, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124157) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_02124158) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionQ9L1K2175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1K2177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1K2MF_02124170 .
?templateMotifSequenceMatchRegionQ9L1K2175 faldo:begin ?templateMotifSequenceMatchBeginQ9L1K2176 .
?templateMotifSequenceMatchBeginQ9L1K2176 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1K2171 ;
faldo:reference isoform:Q9L1K2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1K2177 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02124181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1K2MF_02124172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02124180 .
?targetMotifMatchRegionMatchBeginMF_02124180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02124173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02124181 edam:has_input signature:MF_02124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1K2MF_02124170, 1, (STRLEN(?templateMotifCigarQ9L1K2MF_02124170) - STRLEN(REPLACE(?templateMotifCigarQ9L1K2MF_02124170, CONCAT('^(?:-*[^-]){', STR(((480 - ?templateMotifSequenceMatchBeginPositionQ9L1K2171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124172, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1K2MF_02124172, 1, (STRLEN(?targetMotifMatchCigarQ9L1K2MF_02124172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1K2MF_02124172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_02124173) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02124a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1763 .
BIND(?this AS ?case8) .
}
}
"xsd:string |
