| http://purl.uniprot.org/unirules/MF_02214#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:764234 up:source unirule:MF_02214 .
_:764235 up:source unirule:MF_02214 .
_:764236 up:source unirule:MF_02214 .
_:764237 up:source unirule:MF_02214 .
_:764238 up:source unirule:MF_02214 .
_:764239 up:source unirule:MF_02214 .
_:764240 up:source unirule:MF_02214 .
_:764241 up:source unirule:MF_02214 .
_:764242 up:source unirule:MF_02214 .
_:764243 up:source unirule:MF_02214 .
_:764244 up:source unirule:MF_02214 .
_:764245 up:source unirule:MF_02214 .
_:764246 up:source unirule:MF_02214 .
_:764247 up:source unirule:MF_02214 .
_:764248 up:source unirule:MF_02214 .
_:764249 up:source unirule:MF_02214 .
_:764250 up:source unirule:MF_02214 .
_:764251 up:source unirule:MF_02214 .
_:764252 up:source unirule:MF_02214 .
_:764253 up:source unirule:MF_02214 .
_:764254 up:source unirule:MF_02214 .
_:764255 up:source unirule:MF_02214 .
_:764256 up:source unirule:MF_02214 .
_:764257 up:source unirule:MF_02214 .
_:764258 up:source unirule:MF_02214 .
_:764259 up:source unirule:MF_02214 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0005524 ,
GO:0009252 ,
GO:0140282 ,
keyword:133 ,
keyword:436 ,
keyword:479 ,
keyword:547 ,
keyword:573 ,
keyword:67 ,
keyword:961 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.5.13' ;
up:fullName 'Lipid II isoglutaminyl synthase (glutamine-hydrolyzing) subunit MurT' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'murT' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'The lipid II isoglutaminyl synthase complex catalyzes the formation of alpha-D-isoglutamine in the cell wall lipid II stem peptide. The MurT subunit catalyzes the ATP-dependent amidation of D-glutamate residue of lipid II, converting it to an isoglutamine residue.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Cell wall biogenesis; peptidoglycan biosynthesis.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Forms a heterodimer with GatD.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MurCDEF family. MurT subfamily.' .
?case12 up:classifiedWith GO:0008270 ,
keyword:862 .
?pfs13 up:annotation ?annotation14 ,
?annotation20 ,
?annotation26 ,
?annotation32 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:29105 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:29105 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:29105 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:29105 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Active_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
_:764260 a rdf:Statement ;
up:attribution _:764234 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:764261 a rdf:Statement ;
up:attribution _:764235 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:764262 a rdf:Statement ;
up:attribution _:764236 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:764263 a rdf:Statement ;
up:attribution _:764237 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:764264 a rdf:Statement ;
up:attribution _:764238 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:764265 a rdf:Statement ;
up:attribution _:764239 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:764266 a rdf:Statement ;
up:attribution _:764240 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:764267 a rdf:Statement ;
up:attribution _:764241 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:764268 a rdf:Statement ;
up:attribution _:764242 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:764269 a rdf:Statement ;
up:attribution _:764243 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:764270 a rdf:Statement ;
up:attribution _:764244 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:133 .
_:764271 a rdf:Statement ;
up:attribution _:764245 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:961 .
_:764272 a rdf:Statement ;
up:attribution _:764246 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:764273 a rdf:Statement ;
up:attribution _:764247 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:764274 a rdf:Statement ;
up:attribution _:764248 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:764275 a rdf:Statement ;
up:attribution _:764249 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:573 .
_:764276 a rdf:Statement ;
up:attribution _:764250 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0140282 .
_:764277 a rdf:Statement ;
up:attribution _:764251 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:764278 a rdf:Statement ;
up:attribution _:764252 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009252 .
_:764279 a rdf:Statement ;
up:attribution _:764253 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:764280 a rdf:Statement ;
up:attribution _:764254 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:764281 a rdf:Statement ;
up:source unirule:MF_02214 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:764282 a rdf:Statement ;
up:attribution _:764255 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:764283 a rdf:Statement ;
up:source unirule:MF_02214 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:764284 a rdf:Statement ;
up:attribution _:764256 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:764285 a rdf:Statement ;
up:source unirule:MF_02214 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:764286 a rdf:Statement ;
up:attribution _:764257 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:764287 a rdf:Statement ;
up:source unirule:MF_02214 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:764288 a rdf:Statement ;
up:attribution _:764258 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:764289 a rdf:Statement ;
up:source unirule:MF_02214 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:764290 a rdf:Statement ;
up:attribution _:764259 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02214
#Rule MF_02214 Created by:? on:2019-03-07 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon44 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02214 .
?thisOrganism rdfs:subClassOf+ ?supertaxon44 .
BIND(URI(CONCAT(STR(?this), '#MF_02214a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02214a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02214a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02214a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02214a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02214a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02214a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_02214a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionA0A0H3JUU750 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H3JUU752 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H3JUU7MF_0221445 .
?templateMotifSequenceMatchRegionA0A0H3JUU750 faldo:begin ?templateMotifSequenceMatchBeginA0A0H3JUU751 .
?templateMotifSequenceMatchBeginA0A0H3JUU751 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H3JUU746 ;
faldo:reference isoform:A0A0H3JUU7-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H3JUU752 edam:has_input signature:MF_02214 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0221456 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H3JUU7MF_0221447 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0221455 .
?targetMotifMatchRegionMatchBeginMF_0221455 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221448 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0221456 edam:has_input signature:MF_02214 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUU7MF_0221445, 1, (STRLEN(?templateMotifCigarA0A0H3JUU7MF_0221445) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUU7MF_0221445, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUU746) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUU7MF_0221447) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUU7MF_0221447) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0221448) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUU7MF_0221445, 1, (STRLEN(?templateMotifCigarA0A0H3JUU7MF_0221445) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUU7MF_0221445, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUU746) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUU7MF_0221447) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUU7MF_0221447) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0221448) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUU7MF_0221445, 1, (STRLEN(?templateMotifCigarA0A0H3JUU7MF_0221445) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUU7MF_0221445, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUU746) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUU7MF_0221447) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUU7MF_0221447) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0221448) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUU7MF_0221445, 1, (STRLEN(?templateMotifCigarA0A0H3JUU7MF_0221445) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUU7MF_0221445, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUU746) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUU7MF_0221447) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUU7MF_0221447) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUU7MF_0221447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0221448) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'C')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionA0A0H3JUU774 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H3JUU776 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H3JUU7MF_0221469 .
?templateMotifSequenceMatchRegionA0A0H3JUU774 faldo:begin ?templateMotifSequenceMatchBeginA0A0H3JUU775 .
?templateMotifSequenceMatchBeginA0A0H3JUU775 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H3JUU770 ;
faldo:reference isoform:A0A0H3JUU7-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H3JUU776 edam:has_input signature:MF_02214 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0221480 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H3JUU7MF_0221471 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0221479 .
?targetMotifMatchRegionMatchBeginMF_0221479 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221472 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0221480 edam:has_input signature:MF_02214 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUU7MF_0221469, 1, (STRLEN(?templateMotifCigarA0A0H3JUU7MF_0221469) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUU7MF_0221469, CONCAT('^(?:-*[^-]){', STR(((349 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUU770) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUU7MF_0221471, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUU7MF_0221471) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUU7MF_0221471, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUU7MF_0221471, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUU7MF_0221471) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUU7MF_0221471, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0221472) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02214a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag84) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag84, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
