| http://purl.uniprot.org/unirules/MF_02217#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:765117 up:source unirule:MF_02217 .
_:765118 up:source unirule:MF_02217 .
_:765119 up:source unirule:MF_02217 .
_:765120 up:source unirule:MF_02217 .
_:765121 up:source unirule:MF_02217 .
_:765122 up:source unirule:MF_02217 .
_:765123 up:source unirule:MF_02217 .
_:765124 up:source unirule:MF_02217 .
_:765125 up:source unirule:MF_02217 .
_:765126 up:source unirule:MF_02217 .
_:765127 up:source unirule:MF_02217 .
_:765128 up:source unirule:MF_02217 .
_:765129 up:source unirule:MF_02217 .
_:765130 up:source unirule:MF_02217 .
_:765131 up:source unirule:MF_02217 .
_:765132 up:source unirule:MF_02217 .
_:765133 up:source unirule:MF_02217 .
_:765134 up:source unirule:MF_02217 .
_:765135 up:source unirule:MF_02217 .
_:765136 up:source unirule:MF_02217 .
_:765137 up:source unirule:MF_02217 .
_:765138 up:source unirule:MF_02217 .
_:765139 up:source unirule:MF_02217 .
_:765140 up:source unirule:MF_02217 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0016300 ,
GO:0030488 ,
keyword:489 ,
keyword:808 ,
keyword:819 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.-' ;
up:fullName 'tRNA 5-hydroxyuridine methyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ho5U methyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'trmR' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the methylation of 5-hydroxyuridine (ho5U) to form 5-methoxyuridine (mo5U) at position 34 in tRNAs.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-dependent O-methyltransferase family.' .
?case8 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs9 up:annotation ?annotation10 ,
?annotation16 ,
?annotation22 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:18420 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:18420 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:18420 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:59789 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:59789 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:59789 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:59789 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:59789 .
_:765141 a rdf:Statement ;
up:attribution _:765117 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:765142 a rdf:Statement ;
up:attribution _:765118 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:765143 a rdf:Statement ;
up:attribution _:765119 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:765144 a rdf:Statement ;
up:attribution _:765120 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:765145 a rdf:Statement ;
up:attribution _:765121 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:765146 a rdf:Statement ;
up:attribution _:765122 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:765147 a rdf:Statement ;
up:attribution _:765123 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:765148 a rdf:Statement ;
up:attribution _:765124 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:765149 a rdf:Statement ;
up:attribution _:765125 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:765150 a rdf:Statement ;
up:attribution _:765126 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:765151 a rdf:Statement ;
up:attribution _:765127 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:765152 a rdf:Statement ;
up:attribution _:765128 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016300 .
_:765153 a rdf:Statement ;
up:attribution _:765129 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030488 .
_:765154 a rdf:Statement ;
up:attribution _:765130 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:765155 a rdf:Statement ;
up:attribution _:765131 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:765156 a rdf:Statement ;
up:attribution _:765132 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:765157 a rdf:Statement ;
up:source unirule:MF_02217 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:765158 a rdf:Statement ;
up:attribution _:765133 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:765159 a rdf:Statement ;
up:source unirule:MF_02217 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:765160 a rdf:Statement ;
up:attribution _:765134 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:765161 a rdf:Statement ;
up:source unirule:MF_02217 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:765162 a rdf:Statement ;
up:attribution _:765135 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:765163 a rdf:Statement ;
up:source unirule:MF_02217 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:765164 a rdf:Statement ;
up:attribution _:765136 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:765165 a rdf:Statement ;
up:source unirule:MF_02217 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:765166 a rdf:Statement ;
up:attribution _:765137 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:765167 a rdf:Statement ;
up:source unirule:MF_02217 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:765168 a rdf:Statement ;
up:attribution _:765138 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:765169 a rdf:Statement ;
up:source unirule:MF_02217 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:765170 a rdf:Statement ;
up:attribution _:765139 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:765171 a rdf:Statement ;
up:source unirule:MF_02217 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:765172 a rdf:Statement ;
up:attribution _:765140 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02217
#Rule MF_02217 Created by:? on:2019-06-11 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02217 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02217a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02217a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02217a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02217a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02217a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02217a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionO3203668 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3203670 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO32036MF_0221763 .
?templateMotifSequenceMatchRegionO3203668 faldo:begin ?templateMotifSequenceMatchBeginO3203669 .
?templateMotifSequenceMatchBeginO3203669 faldo:position ?templateMotifSequenceMatchBeginPositionO3203664 ;
faldo:reference isoform:O32036-1 .
?templateMotifSequenceProfileAlignmentOperationO3203670 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0221774 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO32036MF_0221765 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0221773 .
?targetMotifMatchRegionMatchBeginMF_0221773 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221766 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0221774 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO32036MF_0221763, 1, (STRLEN(?templateMotifCigarO32036MF_0221763) - STRLEN(REPLACE(?templateMotifCigarO32036MF_0221763, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionO3203664) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO32036MF_0221765, 1, (STRLEN(?targetMotifMatchCigarO32036MF_0221765) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_0221765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO32036MF_0221765, 1, (STRLEN(?targetMotifMatchCigarO32036MF_0221765) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_0221765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0221766) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO32036MF_0221763, 1, (STRLEN(?templateMotifCigarO32036MF_0221763) - STRLEN(REPLACE(?templateMotifCigarO32036MF_0221763, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionO3203664) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO32036MF_0221765, 1, (STRLEN(?targetMotifMatchCigarO32036MF_0221765) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_0221765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO32036MF_0221765, 1, (STRLEN(?targetMotifMatchCigarO32036MF_0221765) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_0221765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0221766) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO32036MF_0221763, 1, (STRLEN(?templateMotifCigarO32036MF_0221763) - STRLEN(REPLACE(?templateMotifCigarO32036MF_0221763, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionO3203664) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO32036MF_0221765, 1, (STRLEN(?targetMotifMatchCigarO32036MF_0221765) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_0221765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO32036MF_0221765, 1, (STRLEN(?targetMotifMatchCigarO32036MF_0221765) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_0221765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0221766) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'N')) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionO3203689 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3203691 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO32036MF_0221784 .
?templateMotifSequenceMatchRegionO3203689 faldo:begin ?templateMotifSequenceMatchBeginO3203690 .
?templateMotifSequenceMatchBeginO3203690 faldo:position ?templateMotifSequenceMatchBeginPositionO3203685 ;
faldo:reference isoform:O32036-1 .
?templateMotifSequenceProfileAlignmentOperationO3203691 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0221795 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO32036MF_0221786 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0221794 .
?targetMotifMatchRegionMatchBeginMF_0221794 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221787 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0221795 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO32036MF_0221784, 1, (STRLEN(?templateMotifCigarO32036MF_0221784) - STRLEN(REPLACE(?templateMotifCigarO32036MF_0221784, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionO3203685) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO32036MF_0221786, 1, (STRLEN(?targetMotifMatchCigarO32036MF_0221786) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_0221786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO32036MF_0221786, 1, (STRLEN(?targetMotifMatchCigarO32036MF_0221786) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_0221786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0221787) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO32036MF_0221784, 1, (STRLEN(?templateMotifCigarO32036MF_0221784) - STRLEN(REPLACE(?templateMotifCigarO32036MF_0221784, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionO3203685) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO32036MF_0221786, 1, (STRLEN(?targetMotifMatchCigarO32036MF_0221786) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_0221786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO32036MF_0221786, 1, (STRLEN(?targetMotifMatchCigarO32036MF_0221786) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_0221786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0221787) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs2t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('[DE]A', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02217a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionO32036106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO32036108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO32036MF_02217101 .
?templateMotifSequenceMatchRegionO32036106 faldo:begin ?templateMotifSequenceMatchBeginO32036107 .
?templateMotifSequenceMatchBeginO32036107 faldo:position ?templateMotifSequenceMatchBeginPositionO32036102 ;
faldo:reference isoform:O32036-1 .
?templateMotifSequenceProfileAlignmentOperationO32036108 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02217112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO32036MF_02217103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02217111 .
?targetMotifMatchRegionMatchBeginMF_02217111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02217104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02217112 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO32036MF_02217101, 1, (STRLEN(?templateMotifCigarO32036MF_02217101) - STRLEN(REPLACE(?templateMotifCigarO32036MF_02217101, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionO32036102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO32036MF_02217103, 1, (STRLEN(?targetMotifMatchCigarO32036MF_02217103) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_02217103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO32036MF_02217103, 1, (STRLEN(?targetMotifMatchCigarO32036MF_02217103) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_02217103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_02217104) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('[MVIL]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02217a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionO32036121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO32036123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO32036MF_02217116 .
?templateMotifSequenceMatchRegionO32036121 faldo:begin ?templateMotifSequenceMatchBeginO32036122 .
?templateMotifSequenceMatchBeginO32036122 faldo:position ?templateMotifSequenceMatchBeginPositionO32036117 ;
faldo:reference isoform:O32036-1 .
?templateMotifSequenceProfileAlignmentOperationO32036123 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02217127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO32036MF_02217118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02217126 .
?targetMotifMatchRegionMatchBeginMF_02217126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02217119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02217127 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO32036MF_02217116, 1, (STRLEN(?templateMotifCigarO32036MF_02217116) - STRLEN(REPLACE(?templateMotifCigarO32036MF_02217116, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionO32036117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO32036MF_02217118, 1, (STRLEN(?targetMotifMatchCigarO32036MF_02217118) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_02217118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO32036MF_02217118, 1, (STRLEN(?targetMotifMatchCigarO32036MF_02217118) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_02217118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_02217119) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_02217a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionO32036136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO32036138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO32036MF_02217131 .
?templateMotifSequenceMatchRegionO32036136 faldo:begin ?templateMotifSequenceMatchBeginO32036137 .
?templateMotifSequenceMatchBeginO32036137 faldo:position ?templateMotifSequenceMatchBeginPositionO32036132 ;
faldo:reference isoform:O32036-1 .
?templateMotifSequenceProfileAlignmentOperationO32036138 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02217142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO32036MF_02217133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02217141 .
?targetMotifMatchRegionMatchBeginMF_02217141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02217134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02217142 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO32036MF_02217131, 1, (STRLEN(?templateMotifCigarO32036MF_02217131) - STRLEN(REPLACE(?templateMotifCigarO32036MF_02217131, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionO32036132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO32036MF_02217133, 1, (STRLEN(?targetMotifMatchCigarO32036MF_02217133) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_02217133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO32036MF_02217133, 1, (STRLEN(?targetMotifMatchCigarO32036MF_02217133) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_02217133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_02217134) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02217a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionO32036151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO32036153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO32036MF_02217146 .
?templateMotifSequenceMatchRegionO32036151 faldo:begin ?templateMotifSequenceMatchBeginO32036152 .
?templateMotifSequenceMatchBeginO32036152 faldo:position ?templateMotifSequenceMatchBeginPositionO32036147 ;
faldo:reference isoform:O32036-1 .
?templateMotifSequenceProfileAlignmentOperationO32036153 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02217157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO32036MF_02217148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02217156 .
?targetMotifMatchRegionMatchBeginMF_02217156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02217149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02217157 edam:has_input signature:MF_02217 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO32036MF_02217146, 1, (STRLEN(?templateMotifCigarO32036MF_02217146) - STRLEN(REPLACE(?templateMotifCigarO32036MF_02217146, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionO32036147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO32036MF_02217148, 1, (STRLEN(?targetMotifMatchCigarO32036MF_02217148) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_02217148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO32036MF_02217148, 1, (STRLEN(?targetMotifMatchCigarO32036MF_02217148) - STRLEN(REPLACE(?targetMotifMatchCigarO32036MF_02217148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_02217149) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02217a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag161) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag161, ?UNBOUND_VARIABLE) AS ?case8) .
}
"xsd:string |
