| http://purl.uniprot.org/unirules/MF_02228#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:769955 up:source unirule:MF_02228 .
_:769956 up:source unirule:MF_02228 .
_:769957 up:source unirule:MF_02228 .
_:769958 up:source unirule:MF_02228 .
_:769959 up:source unirule:MF_02228 .
_:769960 up:source unirule:MF_02228 .
_:769961 up:source unirule:MF_02228 .
_:769962 up:source unirule:MF_02228 .
_:769963 up:source unirule:MF_02228 .
_:769964 up:source unirule:MF_02228 .
_:769965 up:source unirule:MF_02228 .
_:769966 up:source unirule:MF_02228 .
_:769967 up:source unirule:MF_02228 .
_:769968 up:source unirule:MF_02228 .
_:769969 up:source unirule:MF_02228 .
_:769970 up:source unirule:MF_02228 .
_:769971 up:source unirule:MF_02228 .
_:769972 up:source unirule:MF_02228 .
_:769973 up:source unirule:MF_02228 .
_:769974 up:source unirule:MF_02228 .
_:769975 up:source unirule:MF_02228 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0016616 ,
keyword:520 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.308' ;
up:fullName 'Sulfopropanediol 3-dehydrogenase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '2,3-dihydroxypropane-1-sulfonate 3-dehydrogenase (sulfolactate forming)' ;
up:shortName 'DHPS 3-dehydrogenase (sulfolactate forming)' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'hpsN' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the NAD-dependent oxidation of (R)-2,3-dihydroxypropane-1-sulfonate to (R)-3-sulfolactate.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the histidinol dehydrogenase family. HpsN subfamily.' .
?case7 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:29105 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29105 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29105 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29105 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:57540 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:57540 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:57540 .
_:769976 a rdf:Statement ;
up:attribution _:769955 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:769977 a rdf:Statement ;
up:attribution _:769956 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:769978 a rdf:Statement ;
up:attribution _:769957 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:769979 a rdf:Statement ;
up:attribution _:769958 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:769980 a rdf:Statement ;
up:attribution _:769959 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:769981 a rdf:Statement ;
up:attribution _:769960 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:769982 a rdf:Statement ;
up:attribution _:769961 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:769983 a rdf:Statement ;
up:attribution _:769962 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:769984 a rdf:Statement ;
up:attribution _:769963 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016616 .
_:769985 a rdf:Statement ;
up:attribution _:769964 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:769986 a rdf:Statement ;
up:attribution _:769965 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:769987 a rdf:Statement ;
up:attribution _:769966 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:769988 a rdf:Statement ;
up:source unirule:MF_02228 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:769989 a rdf:Statement ;
up:attribution _:769967 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:769990 a rdf:Statement ;
up:source unirule:MF_02228 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:769991 a rdf:Statement ;
up:attribution _:769968 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:769992 a rdf:Statement ;
up:source unirule:MF_02228 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:769993 a rdf:Statement ;
up:attribution _:769969 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:769994 a rdf:Statement ;
up:source unirule:MF_02228 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:769995 a rdf:Statement ;
up:attribution _:769970 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:769996 a rdf:Statement ;
up:source unirule:MF_02228 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:769997 a rdf:Statement ;
up:attribution _:769971 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:769998 a rdf:Statement ;
up:source unirule:MF_02228 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:769999 a rdf:Statement ;
up:attribution _:769972 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:770000 a rdf:Statement ;
up:source unirule:MF_02228 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:770001 a rdf:Statement ;
up:attribution _:769973 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:770002 a rdf:Statement ;
up:source unirule:MF_02228 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:770003 a rdf:Statement ;
up:attribution _:769974 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:770004 a rdf:Statement ;
up:source unirule:MF_02228 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:770005 a rdf:Statement ;
up:attribution _:769975 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02228
#Rule MF_02228 Created by:? on:2019-09-19 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02228 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_02228a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02228a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02228a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02228a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02228a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionQ46N5371 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46N5373 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46N53MF_0222866 .
?templateMotifSequenceMatchRegionQ46N5371 faldo:begin ?templateMotifSequenceMatchBeginQ46N5372 .
?templateMotifSequenceMatchBeginQ46N5372 faldo:position ?templateMotifSequenceMatchBeginPositionQ46N5367 ;
faldo:reference isoform:Q46N53-1 .
?templateMotifSequenceProfileAlignmentOperationQ46N5373 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0222877 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46N53MF_0222868 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0222876 .
?targetMotifMatchRegionMatchBeginMF_0222876 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0222869 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0222877 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46N53MF_0222866, 1, (STRLEN(?templateMotifCigarQ46N53MF_0222866) - STRLEN(REPLACE(?templateMotifCigarQ46N53MF_0222866, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionQ46N5367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46N53MF_0222868, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_0222868) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_0222868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46N53MF_0222868, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_0222868) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_0222868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0222869) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[EQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46N53MF_0222866, 1, (STRLEN(?templateMotifCigarQ46N53MF_0222866) - STRLEN(REPLACE(?templateMotifCigarQ46N53MF_0222866, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionQ46N5367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46N53MF_0222868, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_0222868) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_0222868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46N53MF_0222868, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_0222868) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_0222868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0222869) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46N53MF_0222866, 1, (STRLEN(?templateMotifCigarQ46N53MF_0222866) - STRLEN(REPLACE(?templateMotifCigarQ46N53MF_0222866, CONCAT('^(?:-*[^-]){', STR(((352 - ?templateMotifSequenceMatchBeginPositionQ46N5367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46N53MF_0222868, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_0222868) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_0222868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46N53MF_0222868, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_0222868) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_0222868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0222869) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46N53MF_0222866, 1, (STRLEN(?templateMotifCigarQ46N53MF_0222866) - STRLEN(REPLACE(?templateMotifCigarQ46N53MF_0222866, CONCAT('^(?:-*[^-]){', STR(((411 - ?templateMotifSequenceMatchBeginPositionQ46N5367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46N53MF_0222868, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_0222868) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_0222868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46N53MF_0222868, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_0222868) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_0222868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0222869) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'H')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionQ46N5395 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46N5397 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46N53MF_0222890 .
?templateMotifSequenceMatchRegionQ46N5395 faldo:begin ?templateMotifSequenceMatchBeginQ46N5396 .
?templateMotifSequenceMatchBeginQ46N5396 faldo:position ?templateMotifSequenceMatchBeginPositionQ46N5391 ;
faldo:reference isoform:Q46N53-1 .
?templateMotifSequenceProfileAlignmentOperationQ46N5397 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02228101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46N53MF_0222892 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02228100 .
?targetMotifMatchRegionMatchBeginMF_02228100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0222893 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02228101 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46N53MF_0222890, 1, (STRLEN(?templateMotifCigarQ46N53MF_0222890) - STRLEN(REPLACE(?templateMotifCigarQ46N53MF_0222890, CONCAT('^(?:-*[^-]){', STR(((318 - ?templateMotifSequenceMatchBeginPositionQ46N5391) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46N53MF_0222892, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_0222892) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_0222892, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46N53MF_0222892, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_0222892) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_0222892, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0222893) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02228a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionQ46N53110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46N53112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46N53MF_02228105 .
?templateMotifSequenceMatchRegionQ46N53110 faldo:begin ?templateMotifSequenceMatchBeginQ46N53111 .
?templateMotifSequenceMatchBeginQ46N53111 faldo:position ?templateMotifSequenceMatchBeginPositionQ46N53106 ;
faldo:reference isoform:Q46N53-1 .
?templateMotifSequenceProfileAlignmentOperationQ46N53112 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02228116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46N53MF_02228107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02228115 .
?targetMotifMatchRegionMatchBeginMF_02228115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02228108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02228116 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46N53MF_02228105, 1, (STRLEN(?templateMotifCigarQ46N53MF_02228105) - STRLEN(REPLACE(?templateMotifCigarQ46N53MF_02228105, CONCAT('^(?:-*[^-]){', STR(((319 - ?templateMotifSequenceMatchBeginPositionQ46N53106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46N53MF_02228107, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_02228107) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_02228107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46N53MF_02228107, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_02228107) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_02228107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_02228108) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs2t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02228a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionQ46N53125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46N53127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46N53MF_02228120 .
?templateMotifSequenceMatchRegionQ46N53125 faldo:begin ?templateMotifSequenceMatchBeginQ46N53126 .
?templateMotifSequenceMatchBeginQ46N53126 faldo:position ?templateMotifSequenceMatchBeginPositionQ46N53121 ;
faldo:reference isoform:Q46N53-1 .
?templateMotifSequenceProfileAlignmentOperationQ46N53127 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02228131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46N53MF_02228122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02228130 .
?targetMotifMatchRegionMatchBeginMF_02228130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02228123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02228131 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46N53MF_02228120, 1, (STRLEN(?templateMotifCigarQ46N53MF_02228120) - STRLEN(REPLACE(?templateMotifCigarQ46N53MF_02228120, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionQ46N53121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46N53MF_02228122, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_02228122) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_02228122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46N53MF_02228122, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_02228122) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_02228122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_02228123) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02228a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionQ46N53140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46N53142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46N53MF_02228135 .
?templateMotifSequenceMatchRegionQ46N53140 faldo:begin ?templateMotifSequenceMatchBeginQ46N53141 .
?templateMotifSequenceMatchBeginQ46N53141 faldo:position ?templateMotifSequenceMatchBeginPositionQ46N53136 ;
faldo:reference isoform:Q46N53-1 .
?templateMotifSequenceProfileAlignmentOperationQ46N53142 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02228146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46N53MF_02228137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02228145 .
?targetMotifMatchRegionMatchBeginMF_02228145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02228138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02228146 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46N53MF_02228135, 1, (STRLEN(?templateMotifCigarQ46N53MF_02228135) - STRLEN(REPLACE(?templateMotifCigarQ46N53MF_02228135, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionQ46N53136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46N53MF_02228137, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_02228137) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_02228137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46N53MF_02228137, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_02228137) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_02228137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_02228138) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs2t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02228a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionQ46N53155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46N53157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46N53MF_02228150 .
?templateMotifSequenceMatchRegionQ46N53155 faldo:begin ?templateMotifSequenceMatchBeginQ46N53156 .
?templateMotifSequenceMatchBeginQ46N53156 faldo:position ?templateMotifSequenceMatchBeginPositionQ46N53151 ;
faldo:reference isoform:Q46N53-1 .
?templateMotifSequenceProfileAlignmentOperationQ46N53157 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02228161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46N53MF_02228152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02228160 .
?targetMotifMatchRegionMatchBeginMF_02228160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02228153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02228161 edam:has_input signature:MF_02228 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46N53MF_02228150, 1, (STRLEN(?templateMotifCigarQ46N53MF_02228150) - STRLEN(REPLACE(?templateMotifCigarQ46N53MF_02228150, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionQ46N53151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46N53MF_02228152, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_02228152) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_02228152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46N53MF_02228152, 1, (STRLEN(?targetMotifMatchCigarQ46N53MF_02228152) - STRLEN(REPLACE(?targetMotifMatchCigarQ46N53MF_02228152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_02228153) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs2t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02228a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag165) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag165, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
