| http://purl.uniprot.org/unirules/MF_02246#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:777242 up:source unirule:MF_02246 .
_:777243 up:source unirule:MF_02246 .
_:777244 up:source unirule:MF_02246 .
_:777245 up:source unirule:MF_02246 .
_:777246 up:source unirule:MF_02246 .
_:777247 up:source unirule:MF_02246 .
_:777248 up:source unirule:MF_02246 .
_:777249 up:source unirule:MF_02246 .
_:777250 up:source unirule:MF_02246 .
_:777251 up:source unirule:MF_02246 .
_:777252 up:source unirule:MF_02246 .
_:777253 up:source unirule:MF_02246 .
_:777254 up:source unirule:MF_02246 .
_:777255 up:source unirule:MF_02246 .
_:777256 up:source unirule:MF_02246 .
_:777257 up:source unirule:MF_02246 .
_:777258 up:source unirule:MF_02246 .
_:777259 up:source unirule:MF_02246 .
_:777260 up:source unirule:MF_02246 .
_:777261 up:source unirule:MF_02246 .
_:777262 up:source unirule:MF_02246 .
_:777263 up:source unirule:MF_02246 .
_:777264 up:source unirule:MF_02246 .
_:777265 up:source unirule:MF_02246 .
_:777266 up:source unirule:MF_02246 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0005524 ,
GO:0008906 ,
GO:0032263 ,
GO:0032264 ,
keyword:418 ,
keyword:460 ,
keyword:547 ,
keyword:660 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.73' ;
up:fullName 'Guanosine-inosine kinase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gsk' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the phosphorylation of guanosine and inosine to GMP and IMP, respectively.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; IMP biosynthesis via salvage pathway; IMP from inosine: step 1/1.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; GMP biosynthesis via salvage pathway.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the carbohydrate kinase PfkB family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:58115 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:58115 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:30616 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:58115 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:30616 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:30616 .
_:777267 a rdf:Statement ;
up:attribution _:777242 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:777268 a rdf:Statement ;
up:attribution _:777243 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:777269 a rdf:Statement ;
up:attribution _:777244 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:777270 a rdf:Statement ;
up:attribution _:777245 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:777271 a rdf:Statement ;
up:attribution _:777246 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:777272 a rdf:Statement ;
up:attribution _:777247 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:777273 a rdf:Statement ;
up:attribution _:777248 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:777274 a rdf:Statement ;
up:attribution _:777249 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:777275 a rdf:Statement ;
up:attribution _:777250 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:777276 a rdf:Statement ;
up:attribution _:777251 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:777277 a rdf:Statement ;
up:attribution _:777252 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:777278 a rdf:Statement ;
up:attribution _:777253 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:777279 a rdf:Statement ;
up:attribution _:777254 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:777280 a rdf:Statement ;
up:attribution _:777255 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:660 .
_:777281 a rdf:Statement ;
up:attribution _:777256 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:777282 a rdf:Statement ;
up:attribution _:777257 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:777283 a rdf:Statement ;
up:attribution _:777258 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008906 .
_:777284 a rdf:Statement ;
up:attribution _:777259 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0032263 .
_:777285 a rdf:Statement ;
up:attribution _:777260 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0032264 .
_:777286 a rdf:Statement ;
up:source unirule:MF_02246 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:777287 a rdf:Statement ;
up:attribution _:777261 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:777288 a rdf:Statement ;
up:source unirule:MF_02246 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:777289 a rdf:Statement ;
up:attribution _:777262 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:777290 a rdf:Statement ;
up:source unirule:MF_02246 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:777291 a rdf:Statement ;
up:attribution _:777263 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:777292 a rdf:Statement ;
up:source unirule:MF_02246 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:777293 a rdf:Statement ;
up:attribution _:777264 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:777294 a rdf:Statement ;
up:source unirule:MF_02246 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:777295 a rdf:Statement ;
up:attribution _:777265 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:777296 a rdf:Statement ;
up:source unirule:MF_02246 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:777297 a rdf:Statement ;
up:attribution _:777266 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02246
#Rule MF_02246 Created by:? on:2021-02-16 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02246 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_02246a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionP0AEW658 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW660 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW6MF_0224653 .
?templateMotifSequenceMatchRegionP0AEW658 faldo:begin ?templateMotifSequenceMatchBeginP0AEW659 .
?templateMotifSequenceMatchBeginP0AEW659 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW654 ;
faldo:reference isoform:P0AEW6-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW660 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0224664 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW6MF_0224655 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0224663 .
?targetMotifMatchRegionMatchBeginMF_0224663 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0224656 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0224664 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW6MF_0224653, 1, (STRLEN(?templateMotifCigarP0AEW6MF_0224653) - STRLEN(REPLACE(?templateMotifCigarP0AEW6MF_0224653, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP0AEW654) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224655, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224655) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224655, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224655, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224655) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224655, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0224656) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW6MF_0224653, 1, (STRLEN(?templateMotifCigarP0AEW6MF_0224653) - STRLEN(REPLACE(?templateMotifCigarP0AEW6MF_0224653, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0AEW654) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224655, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224655) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224655, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224655, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224655) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224655, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0224656) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('D[QE]T[LI]VD', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionP0AEW675 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW677 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW6MF_0224670 .
?templateMotifSequenceMatchRegionP0AEW675 faldo:begin ?templateMotifSequenceMatchBeginP0AEW676 .
?templateMotifSequenceMatchBeginP0AEW676 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW671 ;
faldo:reference isoform:P0AEW6-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW677 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0224681 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW6MF_0224672 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0224680 .
?targetMotifMatchRegionMatchBeginMF_0224680 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0224673 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0224681 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW6MF_0224670, 1, (STRLEN(?templateMotifCigarP0AEW6MF_0224670) - STRLEN(REPLACE(?templateMotifCigarP0AEW6MF_0224670, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP0AEW671) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224672, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224672) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224672, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224672, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224672) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224672, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0224673) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW6MF_0224670, 1, (STRLEN(?templateMotifCigarP0AEW6MF_0224670) - STRLEN(REPLACE(?templateMotifCigarP0AEW6MF_0224670, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP0AEW671) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224672, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224672) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224672, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224672, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224672) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224672, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0224673) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('G[TA][IV][GA]N', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionP0AEW692 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW694 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW6MF_0224687 .
?templateMotifSequenceMatchRegionP0AEW692 faldo:begin ?templateMotifSequenceMatchBeginP0AEW693 .
?templateMotifSequenceMatchBeginP0AEW693 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW688 ;
faldo:reference isoform:P0AEW6-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW694 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0224698 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW6MF_0224689 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0224697 .
?targetMotifMatchRegionMatchBeginMF_0224697 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0224690 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0224698 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW6MF_0224687, 1, (STRLEN(?templateMotifCigarP0AEW6MF_0224687) - STRLEN(REPLACE(?templateMotifCigarP0AEW6MF_0224687, CONCAT('^(?:-*[^-]){', STR(((284 - ?templateMotifSequenceMatchBeginPositionP0AEW688) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224689, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224689) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224689, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224689, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224689) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224689, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0224690) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW6MF_0224687, 1, (STRLEN(?templateMotifCigarP0AEW6MF_0224687) - STRLEN(REPLACE(?templateMotifCigarP0AEW6MF_0224687, CONCAT('^(?:-*[^-]){', STR(((289 - ?templateMotifSequenceMatchBeginPositionP0AEW688) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224689, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224689) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224689, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW6MF_0224689, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_0224689) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_0224689, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0224690) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionP0AEW6109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW6111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW6MF_02246104 .
?templateMotifSequenceMatchRegionP0AEW6109 faldo:begin ?templateMotifSequenceMatchBeginP0AEW6110 .
?templateMotifSequenceMatchBeginP0AEW6110 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW6105 ;
faldo:reference isoform:P0AEW6-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW6111 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02246115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW6MF_02246106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02246114 .
?targetMotifMatchRegionMatchBeginMF_02246114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02246107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02246115 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW6MF_02246104, 1, (STRLEN(?templateMotifCigarP0AEW6MF_02246104) - STRLEN(REPLACE(?templateMotifCigarP0AEW6MF_02246104, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP0AEW6105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW6MF_02246106, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_02246106) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_02246106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW6MF_02246106, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_02246106) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_02246106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_02246107) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionP0AEW6124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW6126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW6MF_02246119 .
?templateMotifSequenceMatchRegionP0AEW6124 faldo:begin ?templateMotifSequenceMatchBeginP0AEW6125 .
?templateMotifSequenceMatchBeginP0AEW6125 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW6120 ;
faldo:reference isoform:P0AEW6-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW6126 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02246130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW6MF_02246121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02246129 .
?targetMotifMatchRegionMatchBeginMF_02246129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02246122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02246130 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW6MF_02246119, 1, (STRLEN(?templateMotifCigarP0AEW6MF_02246119) - STRLEN(REPLACE(?templateMotifCigarP0AEW6MF_02246119, CONCAT('^(?:-*[^-]){', STR(((357 - ?templateMotifSequenceMatchBeginPositionP0AEW6120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW6MF_02246121, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_02246121) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_02246121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW6MF_02246121, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_02246121) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_02246121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_02246122) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP0AEW6139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW6141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW6MF_02246134 .
?templateMotifSequenceMatchRegionP0AEW6139 faldo:begin ?templateMotifSequenceMatchBeginP0AEW6140 .
?templateMotifSequenceMatchBeginP0AEW6140 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW6135 ;
faldo:reference isoform:P0AEW6-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW6141 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02246145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW6MF_02246136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02246144 .
?targetMotifMatchRegionMatchBeginMF_02246144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02246137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02246145 edam:has_input signature:MF_02246 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW6MF_02246134, 1, (STRLEN(?templateMotifCigarP0AEW6MF_02246134) - STRLEN(REPLACE(?templateMotifCigarP0AEW6MF_02246134, CONCAT('^(?:-*[^-]){', STR(((402 - ?templateMotifSequenceMatchBeginPositionP0AEW6135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW6MF_02246136, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_02246136) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_02246136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW6MF_02246136, 1, (STRLEN(?targetMotifMatchCigarP0AEW6MF_02246136) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW6MF_02246136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_02246137) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02246a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
}
"xsd:string |
