| http://purl.uniprot.org/unirules/MF_03002#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:780818 up:source unirule:MF_03002 .
_:780819 up:source unirule:MF_03002 .
_:780820 up:source unirule:MF_03002 .
_:780821 up:source unirule:MF_03002 .
_:780822 up:source unirule:MF_03002 .
_:780823 up:source unirule:MF_03002 .
_:780824 up:source unirule:MF_03002 .
_:780825 up:source unirule:MF_03002 .
_:780826 up:source unirule:MF_03002 .
_:780827 up:source unirule:MF_03002 .
_:780828 up:source unirule:MF_03002 .
_:780829 up:source unirule:MF_03002 .
_:780830 up:source unirule:MF_03002 .
_:780831 up:source unirule:MF_03002 .
_:780832 up:source unirule:MF_03002 .
_:780833 up:source unirule:MF_03002 .
_:780834 up:source unirule:MF_03002 .
_:780835 up:source unirule:MF_03002 .
_:780836 up:source unirule:MF_03002 .
_:780837 up:source unirule:MF_03002 .
_:780838 up:source unirule:MF_03002 .
_:780839 up:source unirule:MF_03002 .
_:780840 up:source unirule:MF_03002 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0001732 ,
GO:0002183 ,
GO:0003743 ,
GO:0005737 ,
GO:0005852 ,
GO:0016282 ,
GO:0033290 ,
keyword:396 ,
keyword:648 ,
keyword:963 .
?annotation0 a up:Subcellular_Location_Annotation .
?annotation0li1 up:cellularComponent .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the eIF-3 subunit C family.' .
?case4 up:classifiedWith keyword:597 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine' .
?pfsb63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb69 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
_:780841 a rdf:Statement ;
up:attribution _:780818 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:780842 a rdf:Statement ;
up:attribution _:780819 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:780843 a rdf:Statement ;
up:attribution _:780820 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:780844 a rdf:Statement ;
up:attribution _:780821 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:396 .
_:780845 a rdf:Statement ;
up:attribution _:780822 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:780846 a rdf:Statement ;
up:attribution _:780823 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003743 .
_:780847 a rdf:Statement ;
up:attribution _:780824 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001732 .
_:780848 a rdf:Statement ;
up:attribution _:780825 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002183 .
_:780849 a rdf:Statement ;
up:attribution _:780826 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:780850 a rdf:Statement ;
up:attribution _:780827 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005852 .
_:780851 a rdf:Statement ;
up:attribution _:780828 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016282 .
_:780852 a rdf:Statement ;
up:attribution _:780829 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033290 .
_:780853 a rdf:Statement ;
up:attribution _:780830 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:780854 a rdf:Statement ;
up:source unirule:MF_03002 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:780855 a rdf:Statement ;
up:attribution _:780831 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:780856 a rdf:Statement ;
up:source unirule:MF_03002 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:780857 a rdf:Statement ;
up:attribution _:780832 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:780858 a rdf:Statement ;
up:source unirule:MF_03002 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:780859 a rdf:Statement ;
up:attribution _:780833 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:780860 a rdf:Statement ;
up:source unirule:MF_03002 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:780861 a rdf:Statement ;
up:attribution _:780834 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:780862 a rdf:Statement ;
up:source unirule:MF_03002 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:780863 a rdf:Statement ;
up:attribution _:780835 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:780864 a rdf:Statement ;
up:source unirule:MF_03002 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:780865 a rdf:Statement ;
up:attribution _:780836 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:780866 a rdf:Statement ;
up:source unirule:MF_03002 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:780867 a rdf:Statement ;
up:attribution _:780837 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:780868 a rdf:Statement ;
up:source unirule:MF_03002 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:780869 a rdf:Statement ;
up:attribution _:780838 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:780870 a rdf:Statement ;
up:source unirule:MF_03002 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:780871 a rdf:Statement ;
up:attribution _:780839 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:780872 a rdf:Statement ;
up:source unirule:MF_03002 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:780873 a rdf:Statement ;
up:attribution _:780840 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03002
#Rule MF_03002 Created by:? on:2009-01-29 Modified by:Edouard de Castro on:2019-11-20
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03002 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03002a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionQ9961378 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9961380 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ99613MF_0300273 .
?templateMotifSequenceMatchRegionQ9961378 faldo:begin ?templateMotifSequenceMatchBeginQ9961379 .
?templateMotifSequenceMatchBeginQ9961379 faldo:position ?templateMotifSequenceMatchBeginPositionQ9961374 ;
faldo:reference isoform:Q99613-1 .
?templateMotifSequenceProfileAlignmentOperationQ9961380 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ99613MF_0300275 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300283 .
?targetMotifMatchRegionMatchBeginMF_0300283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0300284 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99613MF_0300273, 1, (STRLEN(?templateMotifCigarQ99613MF_0300273) - STRLEN(REPLACE(?templateMotifCigarQ99613MF_0300273, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionQ9961374) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99613MF_0300275, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_0300275) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_0300275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99613MF_0300275, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_0300275) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_0300275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0300276) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ9961393 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9961395 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ99613MF_0300288 .
?templateMotifSequenceMatchRegionQ9961393 faldo:begin ?templateMotifSequenceMatchBeginQ9961394 .
?templateMotifSequenceMatchBeginQ9961394 faldo:position ?templateMotifSequenceMatchBeginPositionQ9961389 ;
faldo:reference isoform:Q99613-1 .
?templateMotifSequenceProfileAlignmentOperationQ9961395 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300299 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ99613MF_0300290 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300298 .
?targetMotifMatchRegionMatchBeginMF_0300298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300291 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0300299 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99613MF_0300288, 1, (STRLEN(?templateMotifCigarQ99613MF_0300288) - STRLEN(REPLACE(?templateMotifCigarQ99613MF_0300288, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionQ9961389) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99613MF_0300290, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_0300290) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_0300290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99613MF_0300290, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_0300290) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_0300290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0300291) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionQ99613108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99613110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ99613MF_03002103 .
?templateMotifSequenceMatchRegionQ99613108 faldo:begin ?templateMotifSequenceMatchBeginQ99613109 .
?templateMotifSequenceMatchBeginQ99613109 faldo:position ?templateMotifSequenceMatchBeginPositionQ99613104 ;
faldo:reference isoform:Q99613-1 .
?templateMotifSequenceProfileAlignmentOperationQ99613110 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03002114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ99613MF_03002105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03002113 .
?targetMotifMatchRegionMatchBeginMF_03002113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03002106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03002114 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99613MF_03002103, 1, (STRLEN(?templateMotifCigarQ99613MF_03002103) - STRLEN(REPLACE(?templateMotifCigarQ99613MF_03002103, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionQ99613104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99613MF_03002105, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002105) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99613MF_03002105, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002105) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_03002106) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionQ99613123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99613125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ99613MF_03002118 .
?templateMotifSequenceMatchRegionQ99613123 faldo:begin ?templateMotifSequenceMatchBeginQ99613124 .
?templateMotifSequenceMatchBeginQ99613124 faldo:position ?templateMotifSequenceMatchBeginPositionQ99613119 ;
faldo:reference isoform:Q99613-1 .
?templateMotifSequenceProfileAlignmentOperationQ99613125 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03002129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ99613MF_03002120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03002128 .
?targetMotifMatchRegionMatchBeginMF_03002128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03002121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03002129 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99613MF_03002118, 1, (STRLEN(?templateMotifCigarQ99613MF_03002118) - STRLEN(REPLACE(?templateMotifCigarQ99613MF_03002118, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionQ99613119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99613MF_03002120, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002120) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99613MF_03002120, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002120) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_03002121) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionQ99613138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99613140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ99613MF_03002133 .
?templateMotifSequenceMatchRegionQ99613138 faldo:begin ?templateMotifSequenceMatchBeginQ99613139 .
?templateMotifSequenceMatchBeginQ99613139 faldo:position ?templateMotifSequenceMatchBeginPositionQ99613134 ;
faldo:reference isoform:Q99613-1 .
?templateMotifSequenceProfileAlignmentOperationQ99613140 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03002144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ99613MF_03002135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03002143 .
?targetMotifMatchRegionMatchBeginMF_03002143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03002136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03002144 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99613MF_03002133, 1, (STRLEN(?templateMotifCigarQ99613MF_03002133) - STRLEN(REPLACE(?templateMotifCigarQ99613MF_03002133, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionQ99613134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99613MF_03002135, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002135) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99613MF_03002135, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002135) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_03002136) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionQ99613153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99613155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ99613MF_03002148 .
?templateMotifSequenceMatchRegionQ99613153 faldo:begin ?templateMotifSequenceMatchBeginQ99613154 .
?templateMotifSequenceMatchBeginQ99613154 faldo:position ?templateMotifSequenceMatchBeginPositionQ99613149 ;
faldo:reference isoform:Q99613-1 .
?templateMotifSequenceProfileAlignmentOperationQ99613155 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03002159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ99613MF_03002150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03002158 .
?targetMotifMatchRegionMatchBeginMF_03002158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03002151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03002159 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99613MF_03002148, 1, (STRLEN(?templateMotifCigarQ99613MF_03002148) - STRLEN(REPLACE(?templateMotifCigarQ99613MF_03002148, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionQ99613149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99613MF_03002150, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002150) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99613MF_03002150, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002150) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_03002151) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionQ99613168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99613170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ99613MF_03002163 .
?templateMotifSequenceMatchRegionQ99613168 faldo:begin ?templateMotifSequenceMatchBeginQ99613169 .
?templateMotifSequenceMatchBeginQ99613169 faldo:position ?templateMotifSequenceMatchBeginPositionQ99613164 ;
faldo:reference isoform:Q99613-1 .
?templateMotifSequenceProfileAlignmentOperationQ99613170 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03002174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ99613MF_03002165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03002173 .
?targetMotifMatchRegionMatchBeginMF_03002173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03002166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03002174 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99613MF_03002163, 1, (STRLEN(?templateMotifCigarQ99613MF_03002163) - STRLEN(REPLACE(?templateMotifCigarQ99613MF_03002163, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionQ99613164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99613MF_03002165, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002165) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99613MF_03002165, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002165) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_03002166) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionQ99613183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99613185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ99613MF_03002178 .
?templateMotifSequenceMatchRegionQ99613183 faldo:begin ?templateMotifSequenceMatchBeginQ99613184 .
?templateMotifSequenceMatchBeginQ99613184 faldo:position ?templateMotifSequenceMatchBeginPositionQ99613179 ;
faldo:reference isoform:Q99613-1 .
?templateMotifSequenceProfileAlignmentOperationQ99613185 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03002189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ99613MF_03002180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03002188 .
?targetMotifMatchRegionMatchBeginMF_03002188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03002181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03002189 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99613MF_03002178, 1, (STRLEN(?templateMotifCigarQ99613MF_03002178) - STRLEN(REPLACE(?templateMotifCigarQ99613MF_03002178, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionQ99613179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99613MF_03002180, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002180) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99613MF_03002180, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002180) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_03002181) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionQ99613198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99613200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ99613MF_03002193 .
?templateMotifSequenceMatchRegionQ99613198 faldo:begin ?templateMotifSequenceMatchBeginQ99613199 .
?templateMotifSequenceMatchBeginQ99613199 faldo:position ?templateMotifSequenceMatchBeginPositionQ99613194 ;
faldo:reference isoform:Q99613-1 .
?templateMotifSequenceProfileAlignmentOperationQ99613200 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03002204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ99613MF_03002195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03002203 .
?targetMotifMatchRegionMatchBeginMF_03002203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03002196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03002204 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99613MF_03002193, 1, (STRLEN(?templateMotifCigarQ99613MF_03002193) - STRLEN(REPLACE(?templateMotifCigarQ99613MF_03002193, CONCAT('^(?:-*[^-]){', STR(((524 - ?templateMotifSequenceMatchBeginPositionQ99613194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99613MF_03002195, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002195) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99613MF_03002195, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002195) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_03002196) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionQ99613213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99613215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ99613MF_03002208 .
?templateMotifSequenceMatchRegionQ99613213 faldo:begin ?templateMotifSequenceMatchBeginQ99613214 .
?templateMotifSequenceMatchBeginQ99613214 faldo:position ?templateMotifSequenceMatchBeginPositionQ99613209 ;
faldo:reference isoform:Q99613-1 .
?templateMotifSequenceProfileAlignmentOperationQ99613215 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03002219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ99613MF_03002210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03002218 .
?targetMotifMatchRegionMatchBeginMF_03002218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03002211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03002219 edam:has_input signature:MF_03002 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99613MF_03002208, 1, (STRLEN(?templateMotifCigarQ99613MF_03002208) - STRLEN(REPLACE(?templateMotifCigarQ99613MF_03002208, CONCAT('^(?:-*[^-]){', STR(((909 - ?templateMotifSequenceMatchBeginPositionQ99613209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99613MF_03002210, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002210) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99613MF_03002210, 1, (STRLEN(?targetMotifMatchCigarQ99613MF_03002210) - STRLEN(REPLACE(?targetMotifMatchCigarQ99613MF_03002210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_03002211) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t222) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03002a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case3) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7214 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon223 {taxon:40674 taxon:33090}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon223 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon224 {taxon:7214 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon224 .
})) .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon225 {taxon:4751 taxon:40674 taxon:33090}
?thisOrganism rdfs:subClassOf+ ?supertaxon225 .
})) .
BIND(?this AS ?case12) .
}
}
"xsd:string |
