| http://purl.uniprot.org/unirules/MF_03009#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:783988 up:source unirule:MF_03009 .
_:783989 up:source unirule:MF_03009 .
_:783990 up:source unirule:MF_03009 .
_:783991 up:source unirule:MF_03009 .
_:783992 up:source unirule:MF_03009 .
_:783993 up:source unirule:MF_03009 .
_:783994 up:source unirule:MF_03009 .
_:783995 up:source unirule:MF_03009 .
_:783996 up:source unirule:MF_03009 .
_:783997 up:source unirule:MF_03009 .
_:783998 up:source unirule:MF_03009 .
_:783999 up:source unirule:MF_03009 .
_:784000 up:source unirule:MF_03009 .
_:784001 up:source unirule:MF_03009 .
_:784002 up:source unirule:MF_03009 .
_:784003 up:source unirule:MF_03009 .
_:784004 up:source unirule:MF_03009 .
_:784005 up:source unirule:MF_03009 .
_:784006 up:source unirule:MF_03009 .
_:784007 up:source unirule:MF_03009 .
_:784008 up:source unirule:MF_03009 .
_:784009 up:source unirule:MF_03009 .
_:784010 up:source unirule:MF_03009 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0001732 ,
GO:0002183 ,
GO:0003743 ,
GO:0005737 ,
GO:0005852 ,
GO:0016282 ,
GO:0033290 ,
keyword:396 ,
keyword:648 ,
keyword:963 .
?annotation0 a up:Subcellular_Location_Annotation .
?annotation0li1 up:cellularComponent .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the eIF-3 subunit J family.' .
?case3 up:classifiedWith keyword:7 .
?case5 up:classifiedWith keyword:597 .
?pfs12 up:annotation ?annotation13 ,
?annotation18 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylalanine' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Sufficient for interaction with EIF3B' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Promotes stable association with the 40S ribosome' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine' .
?pfsb55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?sam59 up:classifiedWith keyword:175 .
?coiledCoil60 faldo:begin ?coiledCoilb61 ;
faldo:end ?coiledCoile62 .
?coiledCoilb61 faldo:position ?coiledCoilbp63 .
?coiledCoile62 faldo:position ?coiledCoilep64 .
?keyword65 up:range ?coiledCoil60 .
_:784011 a rdf:Statement ;
up:attribution _:783988 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:784012 a rdf:Statement ;
up:attribution _:783989 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:784013 a rdf:Statement ;
up:attribution _:783990 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:784014 a rdf:Statement ;
up:attribution _:783991 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:396 .
_:784015 a rdf:Statement ;
up:attribution _:783992 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:784016 a rdf:Statement ;
up:attribution _:783993 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003743 .
_:784017 a rdf:Statement ;
up:attribution _:783994 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001732 .
_:784018 a rdf:Statement ;
up:attribution _:783995 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002183 .
_:784019 a rdf:Statement ;
up:attribution _:783996 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:784020 a rdf:Statement ;
up:attribution _:783997 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005852 .
_:784021 a rdf:Statement ;
up:attribution _:783998 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016282 .
_:784022 a rdf:Statement ;
up:attribution _:783999 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033290 .
_:784023 a rdf:Statement ;
up:attribution _:784000 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:784024 a rdf:Statement ;
up:attribution _:784001 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:784025 a rdf:Statement ;
up:source unirule:MF_03009 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:784026 a rdf:Statement ;
up:attribution _:784002 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:784027 a rdf:Statement ;
up:source unirule:MF_03009 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:784028 a rdf:Statement ;
up:attribution _:784003 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:784029 a rdf:Statement ;
up:source unirule:MF_03009 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:784030 a rdf:Statement ;
up:attribution _:784004 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:784031 a rdf:Statement ;
up:source unirule:MF_03009 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:784032 a rdf:Statement ;
up:attribution _:784005 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:784033 a rdf:Statement ;
up:source unirule:MF_03009 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:784034 a rdf:Statement ;
up:attribution _:784006 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:784035 a rdf:Statement ;
up:source unirule:MF_03009 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:784036 a rdf:Statement ;
up:attribution _:784007 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:784037 a rdf:Statement ;
up:source unirule:MF_03009 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:784038 a rdf:Statement ;
up:attribution _:784008 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:784039 a rdf:Statement ;
up:source unirule:MF_03009 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:784040 a rdf:Statement ;
up:attribution _:784009 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:784041 a rdf:Statement ;
up:attribution _:784010 ;
rdf:subject ?sam59 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03009
#Rule MF_03009 Created by:? on:2009-01-30 Modified by:ipedruzz on:2021-08-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03009 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03009a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03009a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionO7582271 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO7582273 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75822MF_0300966 .
?templateMotifSequenceMatchRegionO7582271 faldo:begin ?templateMotifSequenceMatchBeginO7582272 .
?templateMotifSequenceMatchBeginO7582272 faldo:position ?templateMotifSequenceMatchBeginPositionO7582267 ;
faldo:reference isoform:O75822-1 .
?templateMotifSequenceProfileAlignmentOperationO7582273 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300977 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75822MF_0300968 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300976 .
?targetMotifMatchRegionMatchBeginMF_0300976 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300969 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0300977 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(1 AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'M')) .
BIND(1 AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'A')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionO7582285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO7582287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75822MF_0300980 .
?templateMotifSequenceMatchRegionO7582285 faldo:begin ?templateMotifSequenceMatchBeginO7582286 .
?templateMotifSequenceMatchBeginO7582286 faldo:position ?templateMotifSequenceMatchBeginPositionO7582281 ;
faldo:reference isoform:O75822-1 .
?templateMotifSequenceProfileAlignmentOperationO7582287 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300991 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75822MF_0300982 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300990 .
?targetMotifMatchRegionMatchBeginMF_0300990 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300983 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0300991 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75822MF_0300980, 1, (STRLEN(?templateMotifCigarO75822MF_0300980) - STRLEN(REPLACE(?templateMotifCigarO75822MF_0300980, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionO7582281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75822MF_0300982, 1, (STRLEN(?targetMotifMatchCigarO75822MF_0300982) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_0300982, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75822MF_0300982, 1, (STRLEN(?targetMotifMatchCigarO75822MF_0300982) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_0300982, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0300983) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75822MF_0300980, 1, (STRLEN(?templateMotifCigarO75822MF_0300980) - STRLEN(REPLACE(?templateMotifCigarO75822MF_0300980, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionO7582281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75822MF_0300982, 1, (STRLEN(?targetMotifMatchCigarO75822MF_0300982) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_0300982, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75822MF_0300982, 1, (STRLEN(?targetMotifMatchCigarO75822MF_0300982) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_0300982, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0300983) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs2t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((BOUND(?thisPositionOn27) && BOUND(?thisPositionOn28))) .
BIND(URI(CONCAT(STR(?this), '#MF_03009a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionO75822102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO75822104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75822MF_0300997 .
?templateMotifSequenceMatchRegionO75822102 faldo:begin ?templateMotifSequenceMatchBeginO75822103 .
?templateMotifSequenceMatchBeginO75822103 faldo:position ?templateMotifSequenceMatchBeginPositionO7582298 ;
faldo:reference isoform:O75822-1 .
?templateMotifSequenceProfileAlignmentOperationO75822104 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03009108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75822MF_0300999 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03009107 .
?targetMotifMatchRegionMatchBeginMF_03009107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03009100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03009108 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75822MF_0300997, 1, (STRLEN(?templateMotifCigarO75822MF_0300997) - STRLEN(REPLACE(?templateMotifCigarO75822MF_0300997, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionO7582298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75822MF_0300999, 1, (STRLEN(?targetMotifMatchCigarO75822MF_0300999) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_0300999, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75822MF_0300999, 1, (STRLEN(?targetMotifMatchCigarO75822MF_0300999) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_0300999, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_03009100) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75822MF_0300997, 1, (STRLEN(?templateMotifCigarO75822MF_0300997) - STRLEN(REPLACE(?templateMotifCigarO75822MF_0300997, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionO7582298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75822MF_0300999, 1, (STRLEN(?targetMotifMatchCigarO75822MF_0300999) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_0300999, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75822MF_0300999, 1, (STRLEN(?targetMotifMatchCigarO75822MF_0300999) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_0300999, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_03009100) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs2t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((BOUND(?thisPositionOn33) && BOUND(?thisPositionOn34))) .
BIND(URI(CONCAT(STR(?this), '#MF_03009a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionO75822119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO75822121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75822MF_03009114 .
?templateMotifSequenceMatchRegionO75822119 faldo:begin ?templateMotifSequenceMatchBeginO75822120 .
?templateMotifSequenceMatchBeginO75822120 faldo:position ?templateMotifSequenceMatchBeginPositionO75822115 ;
faldo:reference isoform:O75822-1 .
?templateMotifSequenceProfileAlignmentOperationO75822121 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03009125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75822MF_03009116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03009124 .
?targetMotifMatchRegionMatchBeginMF_03009124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03009117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03009125 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75822MF_03009114, 1, (STRLEN(?templateMotifCigarO75822MF_03009114) - STRLEN(REPLACE(?templateMotifCigarO75822MF_03009114, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionO75822115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75822MF_03009116, 1, (STRLEN(?targetMotifMatchCigarO75822MF_03009116) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_03009116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75822MF_03009116, 1, (STRLEN(?targetMotifMatchCigarO75822MF_03009116) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_03009116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_03009117) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs2t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03009a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionO75822134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO75822136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75822MF_03009129 .
?templateMotifSequenceMatchRegionO75822134 faldo:begin ?templateMotifSequenceMatchBeginO75822135 .
?templateMotifSequenceMatchBeginO75822135 faldo:position ?templateMotifSequenceMatchBeginPositionO75822130 ;
faldo:reference isoform:O75822-1 .
?templateMotifSequenceProfileAlignmentOperationO75822136 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03009140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75822MF_03009131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03009139 .
?targetMotifMatchRegionMatchBeginMF_03009139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03009132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03009140 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75822MF_03009129, 1, (STRLEN(?templateMotifCigarO75822MF_03009129) - STRLEN(REPLACE(?templateMotifCigarO75822MF_03009129, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionO75822130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75822MF_03009131, 1, (STRLEN(?targetMotifMatchCigarO75822MF_03009131) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_03009131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75822MF_03009131, 1, (STRLEN(?targetMotifMatchCigarO75822MF_03009131) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_03009131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_03009132) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs2t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03009a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionO75822149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO75822151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75822MF_03009144 .
?templateMotifSequenceMatchRegionO75822149 faldo:begin ?templateMotifSequenceMatchBeginO75822150 .
?templateMotifSequenceMatchBeginO75822150 faldo:position ?templateMotifSequenceMatchBeginPositionO75822145 ;
faldo:reference isoform:O75822-1 .
?templateMotifSequenceProfileAlignmentOperationO75822151 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03009155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75822MF_03009146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03009154 .
?targetMotifMatchRegionMatchBeginMF_03009154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03009147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03009155 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75822MF_03009144, 1, (STRLEN(?templateMotifCigarO75822MF_03009144) - STRLEN(REPLACE(?templateMotifCigarO75822MF_03009144, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionO75822145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75822MF_03009146, 1, (STRLEN(?targetMotifMatchCigarO75822MF_03009146) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_03009146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75822MF_03009146, 1, (STRLEN(?targetMotifMatchCigarO75822MF_03009146) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_03009146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_03009147) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs2t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03009a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionO75822164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO75822166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75822MF_03009159 .
?templateMotifSequenceMatchRegionO75822164 faldo:begin ?templateMotifSequenceMatchBeginO75822165 .
?templateMotifSequenceMatchBeginO75822165 faldo:position ?templateMotifSequenceMatchBeginPositionO75822160 ;
faldo:reference isoform:O75822-1 .
?templateMotifSequenceProfileAlignmentOperationO75822166 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03009170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75822MF_03009161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03009169 .
?targetMotifMatchRegionMatchBeginMF_03009169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03009162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03009170 edam:has_input signature:MF_03009 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75822MF_03009159, 1, (STRLEN(?templateMotifCigarO75822MF_03009159) - STRLEN(REPLACE(?templateMotifCigarO75822MF_03009159, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionO75822160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75822MF_03009161, 1, (STRLEN(?targetMotifMatchCigarO75822MF_03009161) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_03009161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75822MF_03009161, 1, (STRLEN(?targetMotifMatchCigarO75822MF_03009161) - STRLEN(REPLACE(?targetMotifMatchCigarO75822MF_03009161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_03009162) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs2t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03009a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag174) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag174, ?UNBOUND_VARIABLE) AS ?case3) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7214 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon175 {taxon:4751 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon175 .
})) .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon176 {taxon:7214 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon176 .
})) .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this up:annotation ?samcc177 ;
up:sequence ?thisSequence .
?samcc177 up:range ?samccr178 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr178 faldo:begin ?samccb179 ;
faldo:end ?samcce180 .
?samccb179 faldo:position ?samccbp181 ;
faldo:reference ?thisSequence .
?samcce180 faldo:position ?samccep182 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam59) .
}
BIND(URI(CONCAT(STR(?this), '#MF_03009a65')) AS ?keyword65) .
}
"xsd:string |
